BAC Information

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BAC

Clone NameB6Ng01-223A18
Chromosome3 (Build37)
Map Location 147,448,991 - 147,532,464
singlet/doubletdoublet
Overlap genenone
Upstream genePrkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A18.bB6Ng01-223A18.g
ACCGA037898GA037899
length1,1421,158
definitionB6Ng01-223A18.b B6Ng01-223A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,531,315 - 147,532,464)(147,448,991 - 147,450,114)
sequence
gaattcccatatcattgatatcctactggcatttgatgttattataattt
tataagcatgaatgtcgttcatgttctaaaatacatttatgtctatctaa
aatccattcataaaatacataatgaagagatcagactttgttactattga
tcactaataactcattgggagtcagatcttggcatggaactgactggtgg
caagcgcccttcttttctgagtcagtggaccactgatattgtgaattttt
attgcctctctaccacatggtaattttcagacatttctaatcactttctc
cttgtacttattaagctttcattttatttctcagttatatttttcctaca
agacagtcagagaccactccatcttttgcctatgctaacgacactccatt
ccagagtggttttcacctggcctccctttatccctatgcaattcattttg
ctctctatattcccaatagccttcctatggctattattagttttcttatg
ttatggtaacacatgatttcagaattgtagtcttaaacaaacatgatcta
ctatcttatgattgtagaagtcagaattctaaattgagtcaaccaaactg
catcctctgtagactggaaggcatagtgctgtagactgggaggcatagta
catttctgagttcccaggtggcctacttctcctttggtgctctttgggtt
tgcattttcattccactggtgaatagttttctttttgacaagcatatctc
tcactttaatccctttaactgaggaatgggtaataaataaggtccactca
tggggtttctgtgaaaattcagttaatccacacaaagagtccttgcactt
aatgcaaactattcgtttcctcacacttaattaatagattggctacattg
aagattgcagcctgaggggaagggcggtaagatggatcaggctgtatgat
gtttgcttactgtcaagcctaatgacttgagttttactaatagtggagga
gctttgtcaggtaacacttaggaggggatggagtgcattgagattctggg
gctgtctgaactgtgtgttgaaaagccaaccacgtaagcttggaagaaat
ccaccattgaacttgcaatttcccttttatactttttcttct

gaattccaaaccactgcattaatacctttagatagcgatatgtagactgt
tggaaacattcaacaaatggaatgtttcttatggtgtcaccagagaaagg
tggtagttggacaggtaagacgagtaatggaggtttcctgagcattcacc
aatagaggtgcacagcaacatggctaacattttacgaacagtagcccttt
tcatcgtcccagaaacttaatgaactataaaccacatcatccttagctta
agggcgaggaagttgaggtttagatggtgatatgttggggctgagaagac
acagctacaaaaaacagttacggttttacactctaatcctgagtatgtcc
gacctgctccttcagtcttacaactatccacgcattaatttctatacatc
ctaatgtctgtttgctcatcttctcaagttggctacaaagaacagcactt
aggaatctagaacaaaaaaagctgccttttcatttggccttaactatggg
tagtaaaattttaattaccttttgtttagaaagtgctacaagacctgaac
tgtaatcagtgctggaagtgggcacaccaaggggttgttgatttccctag
tgaatttgggtatcatttatggaaatgtaattacagaggagtcctgttat
aacgatcaatttgggcaacccccatttgatcattacatccaaatgatcac
cacatacagcccataaaacagtgagcctctcaaaccagacaggctctaca
gtcaatatccatcttgcaaaaccagagttattaccactgagtacttcaga
acccagcacaggtcagtaacgttattggctctaattagccctttctaaag
gccttaaaggttttttttttttttaagctaaatcattaatggctttatat
ataaaggggctttcaaattcaactaagtcaaacaagtatttattatgcac
ccgctggtgtacctccaatgggctcagcttactgaaagagaaagcaagca
aatgaacttttctttggtgtggcttcacccatgaactttagaatttggtg
taactcatcgaaacagcttctggcctaaaaataagtggggtgcccactaa
aactccaacctcccaatgcttggttcatacttctaaggttaaggtaaaaa
ggaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147531315_147532464
seq2: B6Ng01-223A18.b_47_1188 (reverse)

seq1  AGAAGAAAAAGTATAAAAAGGAAA-TGCAAGTCCATTTGTGGATTTCTTC  49
      |||||||||||||||||| ||||| ||||||| || | ||||||||||||
seq2  AGAAGAAAAAGTATAAAAGGGAAATTGCAAGTTCAATGGTGGATTTCTTC  50

seq1  CAAGCCTTTCCGTG--TTGCTTTTCTACACCACAGTTTCAGACCAGCCCC  97
      |||||  || ||||  | ||||||| ||| ||||| |||||| |||||||
seq2  CAAGC--TTACGTGGTTGGCTTTTCAACA-CACAG-TTCAGA-CAGCCCC  95

seq1  AGATCTTCAATTGCCACCTTCCATCCCCTCCTAAGTGTTACCCTGACAAA  147
      |||   |||||   |||  ||||||||||||||||||||| |||||||||
seq2  AGAATCTCAAT--GCAC--TCCATCCCCTCCTAAGTGTTA-CCTGACAAA  140

seq1  GCTCCTCCACTATTAGTTAAAACTCAAGTCATTAGGCTTGACAGTAAGCA  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTCCTCCACTATTAG-TAAAACTCAAGTCATTAGGCTTGACAGTAAGCA  189

seq1  AACATCATACAGCCTGATCCATCTTACCGCCCTTCCCCTCAGGCTGCAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATACAGCCTGATCCATCTTACCGCCCTTCCCCTCAGGCTGCAAT  239

seq1  CTTCAATGTAGCCAATCTATTAATTAAGTGTGAGGAAACGAATAGTTTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTAGCCAATCTATTAATTAAGTGTGAGGAAACGAATAGTTTGC  289

seq1  ATTAAGTGCAAGGACTCTTTGTGTGGATTAACTGAATTTTCACAGAAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGCAAGGACTCTTTGTGTGGATTAACTGAATTTTCACAGAAACC  339

seq1  CCATGAGTGGACCTTATTTATTACCCATTCCTCAGTTAAAGGGATTAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTGGACCTTATTTATTACCCATTCCTCAGTTAAAGGGATTAAAG  389

seq1  TGAGAGATATGCTTGTCAAAAAGAAAACTATTCACCAGTGGAATGAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATATGCTTGTCAAAAAGAAAACTATTCACCAGTGGAATGAAAAT  439

seq1  GCAAACCCAAAGAGCACCAAAGGAGAAGTAGGCCACCTGGGAACTCAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCAAAGAGCACCAAAGGAGAAGTAGGCCACCTGGGAACTCAGAA  489

seq1  ATGTACTATGCCTCCCAGTCTACAGCACTATGCCTTCCAGTCTACAGAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTATGCCTCCCAGTCTACAGCACTATGCCTTCCAGTCTACAGAGG  539

seq1  ATGCAGTTTGGTTGACTCAATTTAGAATTCTGACTTCTACAATCATAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTTGGTTGACTCAATTTAGAATTCTGACTTCTACAATCATAAGA  589

seq1  TAGTAGATCATGTTTGTTTAAGACTACAATTCTGAAATCATGTGTTACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATCATGTTTGTTTAAGACTACAATTCTGAAATCATGTGTTACCA  639

seq1  TAACATAAGAAAACTAATAATAGCCATAGGAAGGCTATTGGGAATATAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAGAAAACTAATAATAGCCATAGGAAGGCTATTGGGAATATAGA  689

seq1  GAGCAAAATGAATTGCATAGGGATAAAGGGAGGCCAGGTGAAAACCACTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATGAATTGCATAGGGATAAAGGGAGGCCAGGTGAAAACCACTC  739

seq1  TGGAATGGAGTGTCGTTAGCATAGGCAAAAGATGGAGTGGTCTCTGACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGAGTGTCGTTAGCATAGGCAAAAGATGGAGTGGTCTCTGACTG  789

seq1  TCTTGTAGGAAAAATATAACTGAGAAATAAAATGAAAGCTTAATAAGTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAGGAAAAATATAACTGAGAAATAAAATGAAAGCTTAATAAGTAC  839

seq1  AAGGAGAAAGTGATTAGAAATGTCTGAAAATTACCATGTGGTAGAGAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAGTGATTAGAAATGTCTGAAAATTACCATGTGGTAGAGAGGC  889

seq1  AATAAAAATTCACAATATCAGTGGTCCACTGACTCAGAAAAGAAGGGCGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTCACAATATCAGTGGTCCACTGACTCAGAAAAGAAGGGCGC  939

seq1  TTGCCACCAGTCAGTTCCATGCCAAGATCTGACTCCCAATGAGTTATTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCAGTCAGTTCCATGCCAAGATCTGACTCCCAATGAGTTATTAG  989

seq1  TGATCAATAGTAACAAAGTCTGATCTCTTCATTATGTATTTTATGAATGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATAGTAACAAAGTCTGATCTCTTCATTATGTATTTTATGAATGG  1039

seq1  ATTTTAGATAGACATAAATGTATTTTAGAACATGAACGACATTCATGCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGATAGACATAAATGTATTTTAGAACATGAACGACATTCATGCTT  1089

seq1  ATAAAATTATAATAACATCAAATGCCAGTAGGATATCAATGATATGGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATAATAACATCAAATGCCAGTAGGATATCAATGATATGGGAA  1139

seq1  TTC  1150
      |||
seq2  TTC  1142


seq1: chr3_147448991_147450114
seq2: B6Ng01-223A18.g_67_1224

seq1  GAATTCCAAACCACTGCATTAATACCTTTAGATAGCGATATGTAGACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCACTGCATTAATACCTTTAGATAGCGATATGTAGACTGT  50

seq1  TGGAAACATTCAACAAATGGAATGTTTCTTATGGTGTCACCAGAGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATTCAACAAATGGAATGTTTCTTATGGTGTCACCAGAGAAAGG  100

seq1  TGGTAGTTGGACAGGTAAGACGAGTAATGGAGGTTTCCTGAGCATTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGGACAGGTAAGACGAGTAATGGAGGTTTCCTGAGCATTCACC  150

seq1  AATAGAGGTGCACAGCAACATGGCTAACATTTTACGAACAGTAGCCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGTGCACAGCAACATGGCTAACATTTTACGAACAGTAGCCCTTT  200

seq1  TCATCGTCCCAGAAACTTAATGAACTATAAACCACATCATCCTTAGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTCCCAGAAACTTAATGAACTATAAACCACATCATCCTTAGCTTA  250

seq1  AGGGCGAGGAAGTTGAGGTTTAGATGGTGATATGTTGGGGCTGAGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGAGGAAGTTGAGGTTTAGATGGTGATATGTTGGGGCTGAGAAGAC  300

seq1  ACAGCTACAAAAAACAGTTACGGTTTTACACTCTAATCCTGAGTATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAAAAAACAGTTACGGTTTTACACTCTAATCCTGAGTATGTCC  350

seq1  GACCTGCTCCTTCAGTCTTACAACTATCCACGCATTAATTTCTATACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTCCTTCAGTCTTACAACTATCCACGCATTAATTTCTATACATC  400

seq1  CTAATGTCTGTTTGCTCATCTTCTCAAGTTGGCTACAAAGAACAGCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTCTGTTTGCTCATCTTCTCAAGTTGGCTACAAAGAACAGCACTT  450

seq1  AGGAATCTAGAACAAAAAAAGCTGCCTTTTCATTTGGCCTTAACTATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTAGAACAAAAAAAGCTGCCTTTTCATTTGGCCTTAACTATGGG  500

seq1  TAGTAAAATTTTAATTACCTTTTGTTTAGAAAGTGCTACAAGACCTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATTTTAATTACCTTTTGTTTAGAAAGTGCTACAAGACCTGAAC  550

seq1  TGTAATCAGTGCTGGAAGTGGGCACACCAAGGGGTTGTTGATTTCCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCAGTGCTGGAAGTGGGCACACCAAGGGGTTGTTGATTTCCCTAG  600

seq1  TGAATTTGGGTATCATTTATGGAAATGTAATTACAGAGGAGTCCTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGGGTATCATTTATGGAAATGTAATTACAGAGGAGTCCTGTTAT  650

seq1  AACGATCAATTTGGGCAACCCCCATTTGATCATTACATCCAAATGATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCAATTTGGGCAACCCCCATTTGATCATTACATCCAAATGATCAC  700

seq1  CACATACAGCCCATAAAACAGTGAGCCTCTCAAACCAGACAGGCTCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGCCCATAAAACAGTGAGCCTCTCAAACCAGACAGGCTCTACA  750

seq1  GTCAAATATCCATCTTGCAAAACCAGAGTTATTACCACTGAGTACTTCAG  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTC-AATATCCATCTTGCAAAACCAGAGTTATTACCACTGAGTACTTCAG  799

seq1  AA-CCAGCACAGGTCAGTAACGTTATTGGCTCTAATTAGCCC-TTCTAAA  848
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACCCAGCACAGGTCAGTAACGTTATTGGCTCTAATTAGCCCTTTCTAAA  849

seq1  GGCCCTAAGG---TTTTTTTTTTTTAAGCTAAATCA-TAATGGC-TTATA  893
      |||| ||| |   ||||||||||||||||||||||| ||||||| |||||
seq2  GGCCTTAAAGGTTTTTTTTTTTTTTAAGCTAAATCATTAATGGCTTTATA  899

seq1  TATAAAGGG--CTTCAAATTCAACTAAGTC-AACAAGTATTTATTATGCA  940
      |||||||||   |||||||||||||||||| |||||||||||||||||||
seq2  TATAAAGGGGCTTTCAAATTCAACTAAGTCAAACAAGTATTTATTATGCA  949

seq1  CCCGCT-GTGTACTCCAAATGGGCTCAGC-TACTG-AAGAGAAAGCAAAG  987
      |||||| ||||||  | |||||||||||| ||||| |||||||||| |||
seq2  CCCGCTGGTGTACCTCCAATGGGCTCAGCTTACTGAAAGAGAAAGC-AAG  998

seq1  CAAATAGACATTTCTTT-GTGTGGC-TCA-CCATGAACTTAAGAAATT-G  1033
      |||||  || ||||||| ||||||| ||| |||||||||| |||| || |
seq2  CAAATGAACTTTTCTTTGGTGTGGCTTCACCCATGAACTTTAGAATTTGG  1048

seq1  TGTAACTCATC-AAACAGC-TCT-GCCT-AAAATTAGT-GGGTG-CCAC-  1076
      ||||||||||| ||||||| ||| |||| ||||| ||| ||||| |||| 
seq2  TGTAACTCATCGAAACAGCTTCTGGCCTAAAAATAAGTGGGGTGCCCACT  1098

seq1  AAAAC-CCCACCTCCCAATGC-TGGTTCA----TCTCAG----AGGTAAA  1116
      ||||| || |||||||||||| |||||||    ||| ||    |||||||
seq2  AAAACTCCAACCTCCCAATGCTTGGTTCATACTTCTAAGGTTAAGGTAAA  1148

seq1  A--GAAAAAA  1124
      |  ||||| |
seq2  AAGGAAAACA  1158


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