BAC Information

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BAC

Clone NameB6Ng01-223E17
Chromosome3 (Build37)
Map Location 5,454,606 - 5,455,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620283, Zfhx4
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223E17.bB6Ng01-223E17.g
ACCGA038079GA038080
length1,160900
definitionB6Ng01-223E17.b B6Ng01-223E17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatattaaatgaaagctaactaagccaatatacttccaaaagttc
acctgtagatgtctgatacatgtaaagcaatttctactcacaactctagt
aacaatctatattattaatatttctatttctgtcaatgtattactggcat
tactatatactggctatttaatatgattgacacttccatggctgaaactg
gaattccctatcagaccatgtacccagaggtcagtaaataaatagataaa
taaatacatattagttaattaattacttaattaaaaaataataaagtaaa
atttaagcacaccctcactgtgatactgaatgagggagactttgcacgtc
tttggaaatcataggtttggaatcaggagcctgttcttcctcttgtcagc
catatcaactgagtagcccacaagactcatatatgaaattcagataacca
atatatcacagattcatgaacagtaaattacatgtatgtcatctaatata
gagaaacattgattttattgaaaaatatccatttgaagaagcttatttta
caatatatacatataacctcgacaagaaatttcttaatactcattccttt
ctccagatcactaagttatcatttcttggaactgaccttcattgtaaact
gttgcctcagaggccttgaacttcttaggactagttggggacatatgcct
ttgggttttaggtttctgagtcctatttcacagtaaccaatccaatcagt
tatttcttaaaagccaccactgttactgtgttggagatgaagagatactt
gagggtgtgacatccagtgtgagtctgccttgatgacatgagcataacta
tatcaagggccctagtctcagacccaaagcaaaaaggcagtgtgtgccta
ctgtgtgtgcaaaaattcacaataggtttcttcccacatggatgattata
gtctgaagactgacaccctgtgcttctactaagagttgctaagcctgtct
ccttgatccatctgtatgccataaactctgagtcattgtttatctgtaat
aaccaggcctcttccaataacctcatttcttcttactcaactgtattgta
acaaaataggtttgaagcttctggaaggtacaatggttttctcccagcag
aaaggcctaa

gaattcttgacagaagaatctctaatggccaaggtgaacctaaagaaatg
ttcaacattcttggtgaagaaaatgcaaatcaaaatgactgtgagatctc
atcttacacctatcagaatgaccaagatcaaaaactcaaggcatagcagc
ttgtgctggcccaattgtggagtagggggatactcctccagtgctggtag
gggtacaaactttggaaatcgatttggtgttttttcagatatttgagagt
agatcaagtcccagatatatcacttttgggcatatccccaaaagatgctc
taccataccacaaggacattggctcaactatgttcatatcagttttatta
gtaatagccagaatctggaaacagtctacatggccctcaaaagaaaagaa
tgaatataggaaatgtggtgcatctacccaatggagtattacttagctat
taaaaacaatgacatcatgaaatttttaggcaaatggatagaactaaaaa
agatcatcctgagtaagataacccagtcccagaaaggcaaacatggtgtg
tactcatttataagtgtatattagccaaaaagtacatagtccacagactc
agagaagctaagtaacaaggagggcccaagggagaactcttgagtctcat
taagaaggggaaatagaatagacattggaggttgatggagggaggggact
gggtaggagaggacttggcaattagaacaggctcaatctggttggggtag
gactgatggagacagtactgggaaaaacaaactgtaattgggatcaggga
tcatctctgggatgagctagaaactatggacaatgggaaatttcccagga
atccttgaatggtgaaccatcatgaacgtggcctagccattggtggtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5454606_5455753
seq2: B6Ng01-223E17.b_42_1201

seq1  GAATTCATATTAAATGAAAGCTAACTAAGCCAATATACTTCCAAAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTAAATGAAAGCTAACTAAGCCAATATACTTCCAAAAGTTC  50

seq1  ACCTGTAGATGTCTGATACATGTAAAGCAATTTCTACTCACAACTCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGATGTCTGATACATGTAAAGCAATTTCTACTCACAACTCTAGT  100

seq1  AACAATCTATATTATTAATATTTCTATTTCTGTCAATGTATTACTGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTATATTATTAATATTTCTATTTCTGTCAATGTATTACTGGCAT  150

seq1  TACTATATACTGGCTATTTAATATGATTGACACTTCCATGGCTGAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATACTGGCTATTTAATATGATTGACACTTCCATGGCTGAAACTG  200

seq1  GAATTCCCTATCAGACCATGTACCCAGAGGTCAGTAAATAAATAGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATCAGACCATGTACCCAGAGGTCAGTAAATAAATAGATAAA  250

seq1  TAAATACATATTAGTTAATTAATTACTTAATTAAAAAATAATAAAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATATTAGTTAATTAATTACTTAATTAAAAAATAATAAAGTAAA  300

seq1  ATTTAAGCACACCCTCACTGTGATACTGAATGAGGGAGACTTTGCACGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCACACCCTCACTGTGATACTGAATGAGGGAGACTTTGCACGTC  350

seq1  TTTGGAAATCATAGGTTTGGAATCAGGAGCCTGTTCTTCCTCTTGTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAATCATAGGTTTGGAATCAGGAGCCTGTTCTTCCTCTTGTCAGC  400

seq1  CATATCAACTGAGTAGCCCACAAGACTCATATATGAAATTCAGATAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAACTGAGTAGCCCACAAGACTCATATATGAAATTCAGATAACCA  450

seq1  ATATATCACAGATTCATGAACAGTAAATTACATGTATGTCATCTAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCACAGATTCATGAACAGTAAATTACATGTATGTCATCTAATATA  500

seq1  GAGAAACATTGATTTTATTGAAAAATATCCATTTGAAGAAGCTTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACATTGATTTTATTGAAAAATATCCATTTGAAGAAGCTTATTTTA  550

seq1  CAATATATACATATAACCTCGACAAGAAATTTCTTAATACTCATTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATACATATAACCTCGACAAGAAATTTCTTAATACTCATTCCTTT  600

seq1  CTCCAGATCACTAAGTTATCATTTCTTGGAACTGACCTTCATTGTAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATCACTAAGTTATCATTTCTTGGAACTGACCTTCATTGTAAACT  650

seq1  GTTGCCTCAGAGGCCTTGAACTTCTTAGGACTAGTTGGGGACATATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTCAGAGGCCTTGAACTTCTTAGGACTAGTTGGGGACATATGCCT  700

seq1  TTGGGTTTTAGGTTTCTGAGTCCTATTTCACAGTAACCAATCCAATCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTAGGTTTCTGAGTCCTATTTCACAGTAACCAATCCAATCAGT  750

seq1  TATTTCTTAAAAGCCACCACTGTTACTGTGTTGGAGATGAAGAGATACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAAAAGCCACCACTGTTACTGTGTTGGAGATGAAGAGATACTT  800

seq1  GAGGGTGTGACATCCAGTGTGAGTCTGCCTTGATGACATGAGCATAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTGACATCCAGTGTGAGTCTGCCTTGATGACATGAGCATAACTA  850

seq1  TATCAAGGGCCCTAGTCTCAGACCCAAAGCAAAAAGGCAGTGTGTGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGGGCCCTAGTCTCAGACCCAAAGCAAAAAGGCAGTGTGTGCCTA  900

seq1  CTGTGTGTGCAAAAATTCACAATAGGTTTCTTCCCACATGGATGATTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGCAAAAATTCACAATAGGTTTCTTCCCACATGGATGATTATA  950

seq1  GTCTGAAGACTGACACCCTGTGCTTCTACTAAGAGTTGCTAAGCCTGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACTGACACCCTGTGCTTCTACTAAGAGTTGCTAAGCCTGTCT  1000

seq1  CCTTGATCCATCTGTATGCCATAAACTCTGAGTCATTGTTTATCTGTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCCATCTGTATGCCATAAACTCTGAGTCATTGTTTATCTGTAAT  1050

seq1  AACCA-GCCTTCTCCAATAACCTCATTTCT--CTACTCAACTGTA-TGTA  1096
      ||||| ||||  ||||||||||||||||||   |||||||||||| ||||
seq2  AACCAGGCCTCTTCCAATAACCTCATTTCTTCTTACTCAACTGTATTGTA  1100

seq1  AC-AAATAGGTT--GAGCTTCTG--AGGTACAATGG-TTTCT-CCAGCAG  1139
      || |||||||||   ||||||||  ||||||||||| ||||| |||||||
seq2  ACAAAATAGGTTTGAAGCTTCTGGAAGGTACAATGGTTTTCTCCCAGCAG  1150

seq1  AAA-GCCTAA  1148
      ||| ||||||
seq2  AAAGGCCTAA  1160


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