BAC Information

Click to search

BAC

Clone NameB6Ng01-223J13
Chromosome3 (Build37)
Map Location 150,163,367 - 150,282,565
singlet/doubletdoublet
Overlap geneLOC100040463, LOC623554
Upstream geneLOC100040620, LOC100040633, LOC100040455
Downstream geneEltd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223J13.bB6Ng01-223J13.g
ACCGA038297GA038298
length1091,092
definitionB6Ng01-223J13.b B6Ng01-223J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,163,367 - 150,163,475)(150,281,458 - 150,282,565)
sequence
gaattcacaagggaagaaatagataagtgaaaagacaaaaagaggaaagg
agagcaggggagaggagagtagaggaaagtaaatgaggaggagaggagat
ggggaggaa

gaattccttagagtcaaaataaataaataaataaataaataaataaataa
ataaataaataaataaatgtataagtttagcaactggcttattgactata
tgaaattggagcattaacagtctttgcctgacaattttcatggtgtaaat
tattaaacattgcatgagatcgaggtacctaccttgtctctttgaaggag
actgtgagaaaaatgctgtcatttctatatcattattttccttagacaaa
gtttacatagatggcatcacaaaatgcaaaacaaaaaaaaatttaaatta
aaactgatcaattttgaagatttgttacatatatttctaagataatttgc
caaactagttataagtctaatttttaattgtctgtgttttaaacaaaaaa
atccctgagaatttacctacttgctatcaaggactcacatgctatctctg
gatcactactatgcccaggtctttttagaaatctcagctctgtcatgcta
tgacagctggcttcggtgtagatgtattgcactagagagtgatacagaaa
tttcctcaaataagtacactttgattgattgattggttggttgattgatt
gattgatttttttaaaaaggccaaaggatcttggctccaccatcatcacc
agtcaaccatctttgtgaatgagaaccattcaggattccttccagtagta
gtttctgaatgtatctgttatgtaaagaagctaaattgataacttattat
attgtgaccgggcaaaacttccttaggtaacagttacaacctttactttg
cctcatgtaaagctaactctcttgttaacatgtgaggtaaaaaagatacg
cacgttcacacaatacaagcttggtatcccaaatactgctaagaaatccc
agaactttatatcccaaaatatttattgtttcaatacttggtgaccaaat
atgctttgacaaaaggatataacatagtgcttcagcgttatgtcaaagca
cttgatatatagcactgctagtactctcttgctagatgctgtctcagttg
aaccactaactcaatcaacactagaaccaaagtcgtcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150163367_150163475
seq2: B6Ng01-223J13.b_45_153

seq1  GAATTCACAAGGGAAGAAATAGATAAGTGAAAAGACAAAAAGAGGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGGGAAGAAATAGATAAGTGAAAAGACAAAAAGAGGAAAGG  50

seq1  AGAGCAGGGGAGAGGAGAGTAGAGGAAAGTAAATGAGGAGGAGAGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGGGAGAGGAGAGTAGAGGAAAGTAAATGAGGAGGAGAGGAGAT  100

seq1  GGGGAGGAA  109
      |||||||||
seq2  GGGGAGGAA  109


seq1: chr3_150281458_150282565
seq2: B6Ng01-223J13.g_65_1156 (reverse)

seq1  AAAAAGAAGGACTTTTGTTCTAGTTGTTTGAATTGAGTTTAGTTGTTTCA  50
      |||||| | |||||| ||||||| ||||   |||||| |||| || ||||
seq2  AAAAAG-ACGACTTTGGTTCTAG-TGTT--GATTGAG-TTAG-TGGTTCA  44

seq1  ACTGAAGACAGGCAATCTTAGC-AGAGAGTTACTTAGCAGTGCTTTATAT  99
      |||| ||||||   ||| |||| |||||| ||| |||||||||| |||||
seq2  ACTG-AGACAG--CATC-TAGCAAGAGAG-TAC-TAGCAGTGCTATATAT  88

seq1  TCAAAGTGCTTTGACATAAACGCTGAAGCACTATGTTTATAATCCTTTTG  149
         |||||||||||||| ||||||||||||||||| |||| |||||||||
seq2  --CAAGTGCTTTGACAT-AACGCTGAAGCACTATG-TTAT-ATCCTTTTG  133

seq1  TCCAAGCATATTTGGTCACCAAGTATTGAAACAATAAATATTTTGGGATA  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCATATTTGGTCACCAAGTATTGAAACAATAAATATTTTGGGATA  183

seq1  TAAAGTTCTGGGATTTCTTAGCAGTATTTGGGATACCAAGCTTGTATTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCTGGGATTTCTTAGCAGTATTTGGGATACCAAGCTTGTATTGT  233

seq1  GTGAACGTGCGTATCTTTTTTACCTCACATGTTAACAAGAGAGTTAGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACGTGCGTATCTTTTTTACCTCACATGTTAACAAGAGAGTTAGCTT  283

seq1  TACATGAGGCAAAGTAAAGGTTGTAACTGTTACCTAAGGAAGTTTTGCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGGCAAAGTAAAGGTTGTAACTGTTACCTAAGGAAGTTTTGCCC  333

seq1  GGTCACAATATAATAAGTTATCAATTTAGCTTCTTTACATAACAGATACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAATATAATAAGTTATCAATTTAGCTTCTTTACATAACAGATACA  383

seq1  TTCAGAAACTACTACTGGAAGGAATCCTGAATGGTTCTCATTCACAAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACTACTACTGGAAGGAATCCTGAATGGTTCTCATTCACAAAGA  433

seq1  TGGTTGACTGGTGATGATGGTGGAGCCAAGATCCTTTGGCCTTTTTAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACTGGTGATGATGGTGGAGCCAAGATCCTTTGGCCTTTTTAAAA  483

seq1  AAATCAATCAATCAATCAACCAACCAATCAATCAATCAAAGTGTACTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATCAATCAATCAACCAACCAATCAATCAATCAAAGTGTACTTAT  533

seq1  TTGAGGAAATTTCTGTATCACTCTCTAGTGCAATACATCTACACCGAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAATTTCTGTATCACTCTCTAGTGCAATACATCTACACCGAAGC  583

seq1  CAGCTGTCATAGCATGACAGAGCTGAGATTTCTAAAAAGACCTGGGCATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCATAGCATGACAGAGCTGAGATTTCTAAAAAGACCTGGGCATA  633

seq1  GTAGTGATCCAGAGATAGCATGTGAGTCCTTGATAGCAAGTAGGTAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATCCAGAGATAGCATGTGAGTCCTTGATAGCAAGTAGGTAAATT  683

seq1  CTCAGGGATTTTTTTGTTTAAAACACAGACAATTAAAAATTAGACTTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATTTTTTTGTTTAAAACACAGACAATTAAAAATTAGACTTATA  733

seq1  ACTAGTTTGGCAAATTATCTTAGAAATATATGTAACAAATCTTCAAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTTGGCAAATTATCTTAGAAATATATGTAACAAATCTTCAAAATT  783

seq1  GATCAGTTTTAATTTAAATTTTTTTTTGTTTTGCATTTTGTGATGCCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTTTAATTTAAATTTTTTTTTGTTTTGCATTTTGTGATGCCATC  833

seq1  TATGTAAACTTTGTCTAAGGAAAATAATGATATAGAAATGACAGCATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAACTTTGTCTAAGGAAAATAATGATATAGAAATGACAGCATTTT  883

seq1  TCTCACAGTCTCCTTCAAAGAGACAAGGTAGGTACCTCGATCTCATGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTCTCCTTCAAAGAGACAAGGTAGGTACCTCGATCTCATGCAA  933

seq1  TGTTTAATAATTTACACCATGAAAATTGTCAGGCAAAGACTGTTAATGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATAATTTACACCATGAAAATTGTCAGGCAAAGACTGTTAATGCT  983

seq1  CCAATTTCATATAGTCAATAAGCCAGTTGCTAAACTTATACATTTATTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCATATAGTCAATAAGCCAGTTGCTAAACTTATACATTTATTTA  1033

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGACTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGACTCT  1083

seq1  AAGGAATTC  1108
      |||||||||
seq2  AAGGAATTC  1092


| Home | SequenceCutter | Blast | Download |