BAC Information

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BAC

Clone NameB6Ng01-224A13
Chromosome3 (Build37)
Map Location 18,147,320 - 18,148,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224A13.bB6Ng01-224A13.g
ACCGA038613GA038614
length1,1791,204
definitionB6Ng01-224A13.b B6Ng01-224A13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattttaattgaattacatcttcccaaatgattctagttgttgt
caacatgacatagaagtatgcattattttatttagaatttgacaaagaat
ggtcttgttttaattctgacaaatttcacagatactactcagagaatact
caacattttatgtatctagtcctcctggataatatgcatgtaggatcgat
tgtttatctatagcacagtttagtctttctgaatctcctcttctactaga
tttttgtcttcaaatatcatatttctcttagcttttaaattgtgttttat
tttaaatggtgttctattctggagctaaggaaatgaccactgaggggaaa
tctgaaggatcacataaagaaatgtcaacagacctctgaagcctcacagc
tggtaggcatgtaggtctcttgtagtgacctacagagaaagtgagagtct
gtgcatatccaatagctaagctgggctgtgaagggtaaactgaagagacc
caggtctgtacatttgaacctaagtaaatggtggaagattggggaagctg
tgggtcagctgatgaacagaaagactatctagacatgataggcagaagga
aaactggtgtgatggctagttttatgtcaatttgatacaagctatggtga
tttgcaaagaagaacatttaatttagattgtacccactagattgttctgt
ggctaagaccctgatgtattttcttgattgatgattaatatggaaggtca
cagatctctgtagttggagtcactcctaggctggtggtgctgggtgggtg
atgttattagaaagcaggctgagcaacccagaaggagcaagccagtaagc
aggacccctacactggcagctcagaccagttgttgtctatagggtcctgc
tttgagttccctccttgacttttctggtgatggactactacttttctccc
aagaagattttttatccttgtgttttatcatagcaatagaaaccttaact
gaaaccactcagcaagtccaagaaccaagaagggaaagttgtcatgtttt
aattgattagagccaaacatcttccagtttcatcacttggcctcattagg
tcatttcatgaattgcaattatctagggtgtgaatacagttgaacaccca
tctttaggaattattactatgcttgaatt
gaattccaatggctcaggctctaagaccaataattgatcaatgggacctc
atgaaactgaaaaccttctgtaaggcagcaaaggacatagtcgatagaac
aaatcagcaacttacagattgggaaacaaacaaacaaacaaacaaacaaa
cttcactaataccacatctgatagagtgctaatatccaaaacaaataact
caagaaattaactaccaaaaacccaaacaacccaatttacaacagagaaa
tctcgaatgactgggaagcactttaagtaatgttcaaagtccttagtgat
caggaaaatacaaatcaaaattaccctgagattccacctaacaccaatca
gaacagctaagattaaaaactcaggtgacaacatccattggcaaggctat
ggaaaaagaggagcattcttccaatactggtgggattgcaaagtagtgga
accactctggaaatcaatctataggctcctcagaaaactggaactatatg
aaacccagctatgccattcttagtcatacacccaaaagatggcccaccat
gccacaagggcacgtgttccactgtgttcacagtggccttatttgtgata
acccgaagttggaaacaacccagatgtcccacaacagaagaatggattca
gaaatctgtttcatttacacagtggaatactattttccttaatgcttgcc
cttagacatgcattttgtctttcagggttttatcatctcctctcgctgag
gtatggtttcattttgttttcagagatatttgcattatgtctcatttatt
gaagctccaatggtagcccctcaattttccaggcatttcattcttgttta
tctcgtttcactatccttgctctctttctcttttttgagtccttcacttt
aactcagtagtaggagtgctgtctcttctactgccccacagggtttgcca
acttcactggtggccagtcaggcatttccctcccacagggttttatagca
cattcttgcacatttcatatagatacctgtgtgtcaaaaaaaatgtacta
atgcttgagatgagttgatgggatctagacatggaggccctttctttatc
tatctataatcctggaatgtccgaatattgatggatttcatacacacttt
tttagacgagtacgagtcggagacttaacataaacgtgcatcatgtctac
gatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18147320_18148495
seq2: B6Ng01-224A13.b_42_1220

seq1  GAATTCAATTTTAATTGAATTACATCTTCCCAAATGATTCTAGTTGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTAATTGAATTACATCTTCCCAAATGATTCTAGTTGTTGT  50

seq1  CAACATGACATAGAAGTATGCATTATTTTATTTAGAATTTGACAAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGACATAGAAGTATGCATTATTTTATTTAGAATTTGACAAAGAAT  100

seq1  GGTCTTGTTTTAATTCTGACAAATTTCACAGATACTACTCAGAGAATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTTTTAATTCTGACAAATTTCACAGATACTACTCAGAGAATACT  150

seq1  CAACATTTTATGTATCTAGTCCTCCTGGATAATATGCATGTAGGATCGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTATGTATCTAGTCCTCCTGGATAATATGCATGTAGGATCGAT  200

seq1  TGTTTATCTATAGCACAGTTTAGTCTTTCTGAATCTCCTCTTCTACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTATAGCACAGTTTAGTCTTTCTGAATCTCCTCTTCTACTAGA  250

seq1  TTTTTGTCTTCAAATATCATATTTCTCTTAGCTTTTAAATTGTGTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTTCAAATATCATATTTCTCTTAGCTTTTAAATTGTGTTTTAT  300

seq1  TTTAAATGGTGTTCTATTCTGGAGCTAAGGAAATGACCACTGAGGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGTGTTCTATTCTGGAGCTAAGGAAATGACCACTGAGGGGAAA  350

seq1  TCTGAAGGATCACATAAAGAAATGTCAACAGACCTCTGAAGCCTCACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGATCACATAAAGAAATGTCAACAGACCTCTGAAGCCTCACAGC  400

seq1  TGGTAGGCATGTAGGTCTCTTGTAGTGACCTACAGAGAAAGTGAGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCATGTAGGTCTCTTGTAGTGACCTACAGAGAAAGTGAGAGTCT  450

seq1  GTGCATATCCAATAGCTAAGCTGGGCTGTGAAGGGTAAACTGAAGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATCCAATAGCTAAGCTGGGCTGTGAAGGGTAAACTGAAGAGACC  500

seq1  CAGGTCTGTACATTTGAACCTAAGTAAATGGTGGAAGATTGGGGAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTACATTTGAACCTAAGTAAATGGTGGAAGATTGGGGAAGCTG  550

seq1  TGGGTCAGCTGATGAACAGAAAGACTATCTAGACATGATAGGCAGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGCTGATGAACAGAAAGACTATCTAGACATGATAGGCAGAAGGA  600

seq1  AAACTGGTGTGATGGCTAGTTTTATGTCAATTTGATACAAGCTATGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTGTGATGGCTAGTTTTATGTCAATTTGATACAAGCTATGGTGA  650

seq1  TTTGCAAAGAAGAACATTTAATTTAGATTGTACCCACTAGATTGTTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAGAAGAACATTTAATTTAGATTGTACCCACTAGATTGTTCTGT  700

seq1  GGCTAAGACCCTGATGTATTTTCTTGATTGATGATTAATATGGAAGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGACCCTGATGTATTTTCTTGATTGATGATTAATATGGAAGGTCA  750

seq1  CAGATCTCTGTAGTTGGAGTCACTCCTAGGCTGGTGGTGCTGGGTGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGTAGTTGGAGTCACTCCTAGGCTGGTGGTGCTGGGTGGGTG  800

seq1  ATGTTATTAGAAAGCAGGCTGAGCAACCCAGAAGGAGCAAGCCAGTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTAGAAAGCAGGCTGAGCAACCCAGAAGGAGCAAGCCAGTAAGC  850

seq1  AGGACCCCTACACTGGCAGCTCAGGACCAGTTGTTGTCTATAGGGTCCTG  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGACCCCTACACTGGCAGCTCA-GACCAGTTGTTGTCTATAGGGTCCTG  899

seq1  CTTTGAGTTCCCTCCTTGACTTTTCTGGTGATGGACTACTACTTTTCCTC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTGAGTTCCCTCCTTGACTTTTCTGGTGATGGACTACTACTTTT-CTC  948

seq1  CCAAGAAGA-TTTTTATCCTTGTGTTTTATCATAGCAATAGAAACCTTAA  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGATTTTTTATCCTTGTGTTTTATCATAGCAATAGAAACCTTAA  998

seq1  CTGAGA-CACTCAGCAAGTCCAAGA--CACAGAGGGAA--GTGTCATG-T  1043
      |||| | ||||||||||||||||||  ||   ||||||   ||||||| |
seq2  CTGAAACCACTCAGCAAGTCCAAGAACCAAGAAGGGAAAGTTGTCATGTT  1048

seq1  TTATATGATTAGAGCCAAACAATCTTCCAGTTTCATCAC-TGGCCTCATT  1092
      |||  ||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TTAATTGATTAGAGCCAAAC-ATCTTCCAGTTTCATCACTTGGCCTCATT  1097

seq1  AGTTCATTTCATGAATTTGCAATTATCTA-GGTGTGAATACAGTTGAGAC  1141
      || |||||||||||| ||||||||||||| ||||||||||||||||| ||
seq2  AGGTCATTTCATGAA-TTGCAATTATCTAGGGTGTGAATACAGTTGA-AC  1145

seq1  ACCCATCTTTAGGAATTATTTACATAT-CTTGAATT  1176
      |||||||||||||||||| |||| ||| ||||||||
seq2  ACCCATCTTTAGGAATTA-TTAC-TATGCTTGAATT  1179