BAC Information

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BAC

Clone NameB6Ng01-224C01
Chromosome3 (Build37)
Map Location 92,832,874 - 92,988,994
singlet/doubletdoublet
Overlap geneEG229571, Crnn
Upstream genePglyrp3, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m
Downstream geneEG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224C01.bB6Ng01-224C01.g
ACCGA038677GA038678
length1,160895
definitionB6Ng01-224C01.b B6Ng01-224C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,832,874 - 92,834,040)(92,988,100 - 92,988,994)
sequence
gaattctacaaacccaccacactgagtggatgtggtagaactgtctctca
ggtctccctcaggttcactatttgggaaccaatggtccatagaactgtgg
ataatatccaaacaccaacaatacctcttctaccaagttacatcacatac
aaagagcacatgtagctgctgttggcaggctcatgggctgagtggttatc
tctcagtcttcaagaacaaaggaagtagcatcagactgccaggcattttg
tggacctgaaagacatgcatgggaagaacatacaacccctgtccttaggc
cttgggtaaagacagggcttgagtggatggaagcctaagcacacacttat
gagacaatatgctagatgctgttgaaactcccaagatgcctcagtggtgg
ggataacataaaatactctgttctcctttcagagacccatagttctttgc
cagggaacaaatgccttcctaactaacggcagcctgtctaggcagtctac
ctctgactttctaagctaggagctagattcccaatgctgacatctgatat
taggttaccttgggcaaattatttagcttctaggactcttggtttcttac
ccataaaattatgcttcattttctcactaataaaacaaaacaaaacaaaa
caaaaaaataattttctctgaaaataacaattgtgtgctaggctagggat
acaatttaagagcacagtagcaagtacagagatatctgctgatcttcgta
actgaaggttcaccaggacaaatactgagaaaggacatagcacgagttca
aagtctatggatctgtagaactacagggaggtgggtgagcctcctgaggt
cttgtgggcattcagctgggaaatggatgggaaagtgttcctacacctca
aagcactatataaatagcatttgcccatctatcctgtgtctgttgcctct
cccacataaaactaaagtcagattatagcaagataagcaggaaaacaagc
aatcactcagacttcatcatgcacaggtacttcttcaacagtctcatcca
aagtaatattgttgttactaatatcaggttaggatgtttggagctaccta
ctaagcccaaggccacatagctcacggatcagacaccaaaggtcaacgtt
cttctgctac
gaattcctactgcacaaaagcaaccaaaagacctattaaaagcaatgata
agtgtgtttatctaaatcctgagatataagaacagtactccaaatttaat
catttctacatactatcaataattaaacttttaatttaaaatataattta
taatactgaaatattatgcaattatgaaatagttacaattttgaaaaata
tgtattggatgtatgtgctaaaaactataaaacagagatggaagaaataa
aataagaacttgaataaatgagaagttatacatgtttgtgaagcaaagac
agtattgttttcattttctcctcagattattttatagatacaatggcagc
ataataaaaatctcaatggtattctttccactgagtcatggtatgaccct
gagtccacatggatctcagtctaagaaacctgctgagatttccaattctt
ctttcccaagaattggatcatgggtagtcatagaaatagaggtggtttat
taagaaagagaggggtattcctgagaagggaagtgggctggggtatgggt
aagaactgtttcatgacactctataggtcgtttacataacttctctttca
cattcagttctccttcacattcttagcctcatggggcttggcttccagta
tttctgctaaactggcttgtttcatctcataaatttgatgcctctttctc
tgcattctactctcttgccacagcatgtttttatttttcttttttatata
aataggcaatttgattctaaaatgtatgcaaagaaactgaactaacctaa
caaactgaaaacaatgtgggatatttggtagtggttacttgaggacttat
atgaagctgcataatcaaaaaaatgcagcccaggcagtggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92832874_92834040
seq2: B6Ng01-224C01.b_47_1206

seq1  GAATTCTACAAACCCACCACACTGAGTGGATGTGGTAGAACTGTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAACCCACCACACTGAGTGGATGTGGTAGAACTGTCTCTCA  50

seq1  GGTCTCCCTCAGGTTCACTATTTGGGAACCAATGGTCCATAGAACTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCTCAGGTTCACTATTTGGGAACCAATGGTCCATAGAACTGTGG  100

seq1  ATAATATCCAAACACCAACAATACCTCTTCTACCAAGTTACATCACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCCAAACACCAACAATACCTCTTCTACCAAGTTACATCACATAC  150

seq1  AAAGAGCACATGTAGCTGCTGTTGGCAGGCTCATGGGCTGAGTGGTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCACATGTAGCTGCTGTTGGCAGGCTCATGGGCTGAGTGGTTATC  200

seq1  TCTCAGTCTTCAAGAACAAAGGAAGTAGCATCAGACTGCCAGGCATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCTTCAAGAACAAAGGAAGTAGCATCAGACTGCCAGGCATTTTG  250

seq1  TGGACCTGAAAGACATGCATGGGAAGAACATACAACCCCTGTCCTTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGAAAGACATGCATGGGAAGAACATACAACCCCTGTCCTTAGGC  300

seq1  CTTGGGTAAAGACAGGGCTTGAGTGGATGGAAGCCTAAGCACACACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTAAAGACAGGGCTTGAGTGGATGGAAGCCTAAGCACACACTTAT  350

seq1  GAGACAATATGCTAGATGCTGTTGAAACTCCCAAGATGCCTCAGTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATATGCTAGATGCTGTTGAAACTCCCAAGATGCCTCAGTGGTGG  400

seq1  GGATAACATAAAATACTCTGTTCTCCTTTCAGAGACCCATAGTTCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACATAAAATACTCTGTTCTCCTTTCAGAGACCCATAGTTCTTTGC  450

seq1  CAGGGAACAAATGCCTTCCTAACTAACGGCAGCCTGTCTAGGCAGTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACAAATGCCTTCCTAACTAACGGCAGCCTGTCTAGGCAGTCTAC  500

seq1  CTCTGACTTTCTAAGCTAGGAGCTAGATTCCCAATGCTGACATCTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTTTCTAAGCTAGGAGCTAGATTCCCAATGCTGACATCTGATAT  550

seq1  TAGGTTACCTTGGGCAAATTATTTAGCTTCTAGGACTCTTGGTTTCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTACCTTGGGCAAATTATTTAGCTTCTAGGACTCTTGGTTTCTTAC  600

seq1  CCATAAAATTATGCTTCATTTTCTCACTAATAAAACAAAACAAAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATTATGCTTCATTTTCTCACTAATAAAACAAAACAAAACAAAA  650

seq1  CAAAAAAATAATTTTCTCTGAAAATAACAATTGTGTGCTAGGCTAGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATAATTTTCTCTGAAAATAACAATTGTGTGCTAGGCTAGGGAT  700

seq1  ACAATTTAAGAGCACAGTAGCAAGTACAGAGATATCTGCTGATCTTCGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAAGAGCACAGTAGCAAGTACAGAGATATCTGCTGATCTTCGTA  750

seq1  ACTGAAGGTTCACCAGGACAAATACTGAGAAAGGACATAGCACGAGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGTTCACCAGGACAAATACTGAGAAAGGACATAGCACGAGTTCA  800

seq1  AAGTCTATGGATCTGTAGAACTACAGGGAGGTGGGTGAGCCTCCTGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATGGATCTGTAGAACTACAGGGAGGTGGGTGAGCCTCCTGAGGT  850

seq1  CTTGTGGGCATTCAGCTGGAAAATGGATGGGAAAGTGTTCCTACACCTCA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTGTGGGCATTCAGCTGGGAAATGGATGGGAAAGTGTTCCTACACCTCA  900

seq1  AAGCACTATATAAATAGCATTTGCCCATCTATCCTGTGTCTGTTGCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTATATAAATAGCATTTGCCCATCTATCCTGTGTCTGTTGCCTCT  950

seq1  CCCACATAAAACTAAAGTCAGATTATAAGCAAGATAAGCAGGAAAACAAG  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCACATAAAACTAAAGTCAGATTAT-AGCAAGATAAGCAGGAAAACAAG  999

seq1  CAACCACTCAGACTTCATCATGCAACAGGTACTTCTTC-ACAGTCTCATC  1049
      ||| ||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CAATCACTCAGACTTCATCATGC-ACAGGTACTTCTTCAACAGTCTCATC  1048

seq1  CAAAGTAAATATTG-TGTTACT-ATATCAGGGTAGGGATGTTTGGAGGCT  1097
      |||||| ||||||| ||||||| |||||||| || ||||||||||| |||
seq2  CAAAGT-AATATTGTTGTTACTAATATCAGGTTA-GGATGTTTGGA-GCT  1095

seq1  AACTACTAAGCCCCAGGCCACATAAGCTCACGGATCAGACA-CAAAGGTC  1146
      | ||||||||||| ||||||||| ||||||||||||||||| ||||||||
seq2  ACCTACTAAGCCCAAGGCCACAT-AGCTCACGGATCAGACACCAAAGGTC  1144

seq1  AAACAGGTGCCCTTCTGCTAC  1167
      ||      |  ||||||||||
seq2  AA-----CGTTCTTCTGCTAC  1160

seq1: chr3_92988100_92988994
seq2: B6Ng01-224C01.g_66_960 (reverse)

seq1  CACCACCACTGCCT-GGCTGCATTTTCTTGATTAATGCAGCTTCATAATA  49
      |||||||||||||| ||||||||||| |||||| |||||||||||| |||
seq2  CACCACCACTGCCTGGGCTGCATTTTTTTGATT-ATGCAGCTTCAT-ATA  48

seq1  AGTCCTCAAGTTAACCACTACC-AATATCCCACATTGTTTTCAGTTTGTT  98
      |||||||||| ||||||||||| ||||||||||||||||||||||||| |
seq2  AGTCCTCAAG-TAACCACTACCAAATATCCCACATTGTTTTCAGTTTG-T  96

seq1  TAGGTTAGTTCAGTTTCTTTGCATACATTTTAGAATCAAATTGCCTATTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAGTTCAGTTTCTTTGCATACATTTTAGAATCAAATTGCCTATTT  146

seq1  ATAT-AAAAAGAAAAATAAAAACATGCTGTGGCAAGAGAGTAGAATGCAG  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAAGAAAAATAAAAACATGCTGTGGCAAGAGAGTAGAATGCAG  196

seq1  AGAAAGAGGCATCAAATTTATGAGATGAAACAAGCCAG-TTAGCAGAAAT  246
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAAGAGGCATCAAATTTATGAGATGAAACAAGCCAGTTTAGCAGAAAT  246

seq1  ACTGGAAGCCAAGCCCCATGAGGCTAAGAATGTGAAGGAGAACTGAATGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGCCAAGCCCCATGAGGCTAAGAATGTGAAGGAGAACTGAATGT  296

seq1  GAAAGAGAAGTTATGTAAACGACCTATAGAGTGTCATGAAACAGTTCTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAGTTATGTAAACGACCTATAGAGTGTCATGAAACAGTTCTTA  346

seq1  CCCATACCCCAGCCCACTTCCCTTCTCAGGAATACCCCTCTCTTTCTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCCCAGCCCACTTCCCTTCTCAGGAATACCCCTCTCTTTCTTAA  396

seq1  TAAACCACCTCTATTTCTATGACTACCCATGATCCAATTCTTGGGAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACCTCTATTTCTATGACTACCCATGATCCAATTCTTGGGAAAGA  446

seq1  AGAATTGGAAATCTCAGCAGGTTTCTTAGACTGAGATCCATGTGGACTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGAAATCTCAGCAGGTTTCTTAGACTGAGATCCATGTGGACTCA  496

seq1  GGGTCATACCATGACTCAGTGGAAAGAATACCATTGAGATTTTTATTATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATACCATGACTCAGTGGAAAGAATACCATTGAGATTTTTATTATG  546

seq1  CTGCCATTGTATCTATAAAATAATCTGAGGAGAAAATGAAAACAATACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTGTATCTATAAAATAATCTGAGGAGAAAATGAAAACAATACTG  596

seq1  TCTTTGCTTCACAAACATGTATAACTTCTCATTTATTCAAGTTCTTATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTCACAAACATGTATAACTTCTCATTTATTCAAGTTCTTATTT  646

seq1  TATTTCTTCCATCTCTGTTTTATAGTTTTTAGCACATACATCCAATACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCCATCTCTGTTTTATAGTTTTTAGCACATACATCCAATACAT  696

seq1  ATTTTTCAAAATTGTAACTATTTCATAATTGCATAATATTTCAGTATTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAAATTGTAACTATTTCATAATTGCATAATATTTCAGTATTAT  746

seq1  AAATTATATTTTAAATTAAAAGTTTAATTATTGATAGTATGTAGAAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTTTAAATTAAAAGTTTAATTATTGATAGTATGTAGAAATGA  796

seq1  TTAAATTTGGAGTACTGTTCTTATATCTCAGGATTTAGATAAACACACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGGAGTACTGTTCTTATATCTCAGGATTTAGATAAACACACTT  846

seq1  ATCATTGCTTTTAATAGGTCTTTTGGTTGCTTTTGTGCAGTAGGAATTC  895
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTTTTAATAGGTCTTTTGGTTGCTTTTGTGCAGTAGGAATTC  895