BAC Information

Click to search

BAC

Clone NameB6Ng01-224I11
Chromosome3 (Build37)
Map Location 113,856,526 - 113,996,448
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneEG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I11.bB6Ng01-224I11.g
ACCGA038963GA038964
length1,1431,197
definitionB6Ng01-224I11.b B6Ng01-224I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,995,302 - 113,996,448)(113,856,526 - 113,857,716)
sequence
gaattcacttcagtacattagttagtcataagcatcattagcagacactg
gctcatgttgtcttaatagtatacaggccttactaagttaataagatcag
atcagagggtagtgagtgcaaacagaaagcatctctctgttgatgatcct
tcacattaaatgtcacgaaaacaaagaatcatcacctggtacaaacgtta
atattcataatatgaagacaatttttcattttatatgtatgagtatcttg
ccttcatataagtttgtacactatgtgtacagtgcctgtggaggtctaaa
gagaacaccagatcacctggagctggagttacagactgttatagccaaca
tgttggtgctgggaatcgaatctatgtgccaaaaaaggatagtcagtgtt
tttaaccattgagctatcactctaagccacagaactattttgattttaaa
tctactttcgtaaagtcagaatatgtatttcccagacaaaacaagttcta
actttaggtcaaggttatttaggagaaaatatttggcaacagctgatgta
cctataaaacagaattaagcttttcttgtatcttgttaatgatgttatct
atgcaatgtccagtatttagtaatgttaatcacagaatacattgtaaaag
aataaaggcacattaaatatacaatgtgtggtaaagatgctcagctacta
ttgcattttgctctaatgatttagtatgtttaaagaaataatacctttag
gctaaacttattttcactgctaaataacaggatttttaattacagtcatc
atagtgtctccttgaaaatctcattgtgtttgttcaaagaattgtggtat
taaattttgtcctacaattaagttttaaaatactaatcaaaatatgataa
ggaatgaccagtgtggttttggaatgaggctcaatttcattatagttgat
gcagaaattattcaagtagagaatgagagaaacagtaggaaataaacatc
ctttacagtcttcaaggaaactatttggcaattgaattaaagatttggaa
aactgacctcaacaaacatggtagtccaggattcaggacagaattctgtt
acttcggcaaagtctagtgcaactacctccatagatggaaaaa

gaattcaatggcattgtgttctcactttttcagggtgcacctgggctgaa
aggaggagaaggtccccagggcccacagggtccagttgtaagtatgaaga
taatagatagccatgttgtccacatttgcacattacagctcctctgtcat
cactctcattctgtgatcccacatggtgtggggaagagaaaataaacagg
tgtccatcaaagcagtcagtgcctgttttctgctaactgcaggcactgat
gagtgctgaagtagaaggatgaaggagtttggagggatttgctctggcag
gagataaggaactatcttacctctttacaacataaatcagaactgtaagc
aaaagaaagtcatcaacagaaaaaaaaactggaaaagttatggtttgaat
ttgtcttcttattcagtctctcatttaataattaattataaaataacctt
caatttcatatacattatattcagtatgatttatgtactccacgagactt
gaatttttcagtgataaagaataccaagtaaaaatgaaaagatgtcattt
catgggctaatagtgactttgcacagctctgtcacattatgaaataatag
gctgtgaacaagtgccagtttagtttcccttgtattcctgaacgtgtgtg
taaactgcagagaaacagtgcagagctcatgtttttaaggccacctttgt
tctccacaatgctctgaagcatcaccatagcgcacaagacgccatattta
gaagcctgttttcattttatcttctttctcctacttaagccgtgttaatc
atcttcacagtactttatcttcatttctaccatcattttctttgcttatc
cttttattctcttcctgacaatgtttcaacttttctcctcgactcaattc
attttgctacctatcctccaacagttcatttcccaatagtagtagatatg
gagtttcatattacttcgttactatgccattatcttattgaaaccaccac
ttgggggggtctgtatttgtcttcagaataaaacctaatgatcaataggc
ggacaatcctctcataggtgttgatctagtacattgacatacctatatca
atattacttatatattgacaccttcatgcttttccaaatcacgtaactct
tgagattatacaaactgtaaggtcacgtaactaattacttacagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113995302_113996448
seq2: B6Ng01-224I11.b_50_1192 (reverse)

seq1  TTTTTCCATCTATG--AGTAGTTGCACTAGAATGTTGCCGAAGT-ACAGA  47
      ||||||||||||||   |||||||||||||| | |||||||||| |||||
seq2  TTTTTCCATCTATGGAGGTAGTTGCACTAGACT-TTGCCGAAGTAACAGA  49

seq1  A-TCTGTCCTGGATTCCTGGACTA-CATGTTTTGTGA-GTCAGTTTTTCC  94
      | |||||||| || |||||||||| |||||||  ||| ||||| ||||||
seq2  ATTCTGTCCT-GAATCCTGGACTACCATGTTTGTTGAGGTCAG-TTTTCC  97

seq1  AAATTCTTTAATTCAATTTGCCAAATAGTTTTCTTTGAAGACTGTTAAGG  144
      ||| |||||||||||| ||||||||||| |||| ||||||||||| ||||
seq2  AAA-TCTTTAATTCAA-TTGCCAAATAG-TTTCCTTGAAGACTGTAAAGG  144

seq1  ATGTTTATTTCCTACTGTTTCTCTCATTTCTCTACTTTGAATAATTTCTG  194
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  ATGTTTATTTCCTACTGTTTCTCTCA-TTCTCTAC-TTGAATAATTTCTG  192

seq1  CATCAACTATAATGAAATTGAGCCTCATTCCAAAACCACACTGGTCATTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTATAATGAAATTGAGCCTCATTCCAAAACCACACTGGTCATTC  242

seq1  CTTATCATATTTTTGATTAGTATTTTTAAAACTTAATTGTAGGACAAAAT  294
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CTTATCATA-TTTTGATTAGTA-TTTTAAAACTTAATTGTAGGACAAAAT  290

seq1  TTAATACCACAATTCTTTGAACAAACACAATGAGATTTTCAAGGAGACAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCACAATTCTTTGAACAAACACAATGAGATTTTCAAGGAGACAC  340

seq1  TATGATGACTGTAATTAAAAATCCTGTTATTTAGCAGTGAAAATAAGTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGACTGTAATTAAAAATCCTGTTATTTAGCAGTGAAAATAAGTTT  390

seq1  AGCCTAAAGGTATTATTTCTTTAAACATACTAAATCATTAGAGCAAAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAGGTATTATTTCTTTAAACATACTAAATCATTAGAGCAAAATG  440

seq1  CAATAGTAGCTGAGCATCTTTACCACACATTGTATATTTAATGTGCCTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTAGCTGAGCATCTTTACCACACATTGTATATTTAATGTGCCTTT  490

seq1  ATTCTTTTACAATGTATTCTGTGATTAACATTACTAAATACTGGACATTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTACAATGTATTCTGTGATTAACATTACTAAATACTGGACATTG  540

seq1  CATAGATAACATCATTAACAAGATACAAGAAAAGCTTAATTCTGTTTTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATAACATCATTAACAAGATACAAGAAAAGCTTAATTCTGTTTTAT  590

seq1  AGGTACATCAGCTGTTGCCAAATATTTTCTCCTAAATAACCTTGACCTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATCAGCTGTTGCCAAATATTTTCTCCTAAATAACCTTGACCTAA  640

seq1  AGTTAGAACTTGTTTTGTCTGGGAAATACATATTCTGACTTTACGAAAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAACTTGTTTTGTCTGGGAAATACATATTCTGACTTTACGAAAGT  690

seq1  AGATTTAAAATCAAAATAGTTCTGTGGCTTAGAGTGATAGCTCAATGGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAAATCAAAATAGTTCTGTGGCTTAGAGTGATAGCTCAATGGTT  740

seq1  AAAAACACTGACTATCCTTTTTTGGCACATAGATTCGATTCCCAGCACCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTGACTATCCTTTTTTGGCACATAGATTCGATTCCCAGCACCA  790

seq1  ACATGTTGGCTATAACAGTCTGTAACTCCAGCTCCAGGTGATCTGGTGTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGGCTATAACAGTCTGTAACTCCAGCTCCAGGTGATCTGGTGTT  840

seq1  CTCTTTAGACCTCCACAGGCACTGTACACATAGTGTACAAACTTATATGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGACCTCCACAGGCACTGTACACATAGTGTACAAACTTATATGA  890

seq1  AGGCAAGATACTCATACATATAAAATGAAAAATTGTCTTCATATTATGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGATACTCATACATATAAAATGAAAAATTGTCTTCATATTATGAA  940

seq1  TATTAACGTTTGTACCAGGTGATGATTCTTTGTTTTCGTGACATTTAATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACGTTTGTACCAGGTGATGATTCTTTGTTTTCGTGACATTTAATG  990

seq1  TGAAGGATCATCAACAGAGAGATGCTTTCTGTTTGCACTCACTACCCTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATCATCAACAGAGAGATGCTTTCTGTTTGCACTCACTACCCTCT  1040

seq1  GATCTGATCTTATTAACTTAGTAAGGCCTGTATACTATTAAGACAACATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATCTTATTAACTTAGTAAGGCCTGTATACTATTAAGACAACATG  1090

seq1  AGCCAGTGTCTGCTAATGATGCTTATGACTAACTAATGTACTGAAGTGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGTCTGCTAATGATGCTTATGACTAACTAATGTACTGAAGTGAA  1140

seq1  TTC  1147
      |||
seq2  TTC  1143


seq1: chr3_113856526_113857716
seq2: B6Ng01-224I11.g_68_1264

seq1  GAATTCAATGGCATTGTGTTCTCACTTTTTCAGGGTGCACCTGGGCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCATTGTGTTCTCACTTTTTCAGGGTGCACCTGGGCTGAA  50

seq1  AGGAGGAGAAGGTCCCCAGGGCCCACAGGGTCCAGTTGTAAGTATGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAAGGTCCCCAGGGCCCACAGGGTCCAGTTGTAAGTATGAAGA  100

seq1  TAATAGATAGCCATGTTGTCCACATTTGCACATTACAGCTCCTCTGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATAGCCATGTTGTCCACATTTGCACATTACAGCTCCTCTGTCAT  150

seq1  CACTCTCATTCTGTGATCCCACATGGTGTGGGGAAGAGAAAATAAACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATTCTGTGATCCCACATGGTGTGGGGAAGAGAAAATAAACAGG  200

seq1  TGTCCATCAAAGCAGTCAGTGCCTGTTTTCTGCTAACTGCAGGCACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCAAAGCAGTCAGTGCCTGTTTTCTGCTAACTGCAGGCACTGAT  250

seq1  GAGTGCTGAAGTAGAAGGATGAAGGAGTTTGGAGGGATTTGCTCTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGAAGTAGAAGGATGAAGGAGTTTGGAGGGATTTGCTCTGGCAG  300

seq1  GAGATAAGGAACTATCTTACCTCTTTACAACATAAATCAGAACTGTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGGAACTATCTTACCTCTTTACAACATAAATCAGAACTGTAAGC  350

seq1  AAAAGAAAGTCATCAACAGAAAAAAAAACTGGAAAAGTTATGGTTTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGTCATCAACAGAAAAAAAAACTGGAAAAGTTATGGTTTGAAT  400

seq1  TTGTCTTCTTATTCAGTCTCTCATTTAATAATTAATTATAAAATAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCTTATTCAGTCTCTCATTTAATAATTAATTATAAAATAACCTT  450

seq1  CAATTTCATATACATTATATTCAGTATGATTTATGTACTCCACGAGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCATATACATTATATTCAGTATGATTTATGTACTCCACGAGACTT  500

seq1  GAATTTTTCAGTGATAAAGAATACCAAGTAAAAATGAAAAGATGTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCAGTGATAAAGAATACCAAGTAAAAATGAAAAGATGTCATTT  550

seq1  CATGGGCTAATAGTGACTTTGCACAGCTCTGTCACATTATGAAATAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTAATAGTGACTTTGCACAGCTCTGTCACATTATGAAATAATAG  600

seq1  GCTGTGAACAAGTGCCAGTTTAGTTTCCCTTGTATTCCTGAACGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAACAAGTGCCAGTTTAGTTTCCCTTGTATTCCTGAACGTGTGTG  650

seq1  TAAACTGCAGAGAAACAGTGCAGAGCTCATGTTTTTAAGGCCACCTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCAGAGAAACAGTGCAGAGCTCATGTTTTTAAGGCCACCTTTGT  700

seq1  TCTCCACAATGCTCTGAAGCATCACCATAGCGCACAAGACGCCATATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAATGCTCTGAAGCATCACCATAGCGCACAAGACGCCATATTTA  750

seq1  GAAGCCTGTTTTCATTTTATCTTCTTTCTCCTACTTAAGCCGTGTTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGTTTTCATTTTATCTTCTTTCTCCTACTTAAGCCGTGTTAATC  800

seq1  ATCTTCACAGTACTTTATCTTCATTTCTACCATCATTTTCTTTGCTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCTTCACAGTACTTTATCTTCATTTCTACCATCATTTTCTTTGCTT-AT  849

seq1  CCTTTTATTCTCTTCCTGACAATGTTTCAACTTTTCTCCTCGACTCAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATTCTCTTCCTGACAATGTTTCAACTTTTCTCCTCGACTCAATT  899

seq1  CATTTTGCTACCTATCCTCCAACAGTTCATTTCCCAATAGTAGTAGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTACCTATCCTCCAACAGTTCATTTCCCAATAGTAGTAGATAT  949

seq1  -GAGTTTCATA-TACTTCGTTAACTATGCCATTATCTTATTG-AACCA-C  996
       |||||||||| ||||||||| |||||||||||||||||||| ||||| |
seq2  GGAGTTTCATATTACTTCGTT-ACTATGCCATTATCTTATTGAAACCACC  998

seq1  ACTTGGGGGGGTCTGTA-TTGTCTCCAGAAT-AAACCTAATGATC-ATAG  1043
      ||||||||||||||||| |||||| |||||| ||||||||||||| ||||
seq2  ACTTGGGGGGGTCTGTATTTGTCTTCAGAATAAAACCTAATGATCAATAG  1048

seq1  CCGACAAATCCTCTTCATA-GTGTGATTCTAGTAACAATGACATACCTAT  1092
       ||   ||||||| ||||| ||||   |||||| ||| ||||||||||||
seq2  GCGGACAATCCTC-TCATAGGTGTTGATCTAGT-ACATTGACATACCTAT  1096

seq1  ATCATATA-TACCTATATATTGACACCTTCATGCTTTT-CAAATCACTGT  1140
      |||| ||| ||| ||||||||||||||||||||||||| ||||||||   
seq2  ATCA-ATATTACTTATATATTGACACCTTCATGCTTTTCCAAATCACGTA  1145

seq1  ACTCTTTGAGAATATTATAC-AACTGTAA-GTCAC-TAACCTATTACT--  1185
      |||| |||||   ||||||| |||||||| ||||| ||||  ||||||  
seq2  ACTC-TTGAG---ATTATACAAACTGTAAGGTCACGTAACTAATTACTTA  1191

seq1  CAGCTC  1191
      ||||||
seq2  CAGCTC  1197


| Home | SequenceCutter | Blast | Download |