BAC Information

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BAC

Clone NameB6Ng01-224J21
Chromosome3 (Build37)
Map Location 81,180,326 - 81,347,644
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224J21.bB6Ng01-224J21.g
ACCGA039024GA039025
length1,1061,175
definitionB6Ng01-224J21.b B6Ng01-224J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,180,326 - 81,181,445)(81,346,467 - 81,347,644)
sequence
gaattcagagtttcacactggaaaaaggatatatgttcttttctctttga
ctcagcttaaagatgcggcaattgagaaggactcataaagaaaaagctgg
atcataaatggtagtattgcaataatgtaacacatggactgtcaggtatc
ttggttttggctactgggcattttctttatatatgtagttgtctttaaaa
tgttttccagaatataagaagagaatggaagctacttgcctctatacctt
gtagttttaataacatttgttcagttaaaagtattggttatgagaattgt
gagtatgaatctcccaggaattttgactgaaatgtcaaacaaaataggtt
gtagatatcattagttacataaggtagtatgaaaagaaacctaatcattt
atcctgtcctattcctttttgtttagggtttaatcacacattctactatg
aacagtcaacataaaacaaaacaaaacaaaacaaaacaagaggaccaata
tatttaaaccaatatcccattatgactaccaattatgactaatattctta
tttcaactgattgcttgtttcatttcccatttgattcccaggatttctac
tgttacagttgaacaaacagagaaatttcaatttggcacagatgttaaga
gaagatccataagcattttgcttcacttgtgatatttattttctatatgg
atcatttattaaatataatgacaataacaaaaacaattttcccattctcc
tttttttcctttttttttttgtttgtttttcgagatagggtttctctgta
tagccctggctgtcttggaactcactttgtagaccaggctggcctcgaac
tcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggcatgc
gccacctacattctcttaggaataaaaattttcttctttaaaactttact
ataacactctgatgtaaaaataaatctgtcatatctcatgcttagagatc
tttagttaactttctatgggacactacagctaaggtctttagcaagtctc
aatttctgatgaaattgacctcatcggacccttggagtgatcagaagtga
tagaaa
gaattcctatctagaagaaaaaaaagcataattccactgaaggaatggta
gagaacaaggaaagaacatcacaaattggagctgccatgacaacaaaata
acaataaactggaaggacagaaaaaaatactggtttcctaaatttctata
ttacattatgttaaatgtttcattttctcaaatttatatgcttaattatg
tgatgactatgttaaaacaaaatatattgaaacataaactacaaaactaa
tgaataaaacagaatcaaaaaatcattgaaatgcacataggttcgaaaat
attcaggcaagataaactatgtatgaaggtaacgaaatgttagatataac
atatattaataataatttaaagtgcattaaatattataaagaaatagtac
tctaaagttaagaaaatgaatatggtgtctcagtaaatcaaagaatacag
atttcaaaacgaaacatgtaacaaagattaaattgaagttgtaactccaa
ctgaaatgaaaaatgcattggaagtgctctacaaagtactggatgtggca
gaaaattgatgaaatttactttaactttgaaaacatatcagaaacgttat
caatcactctgataagcaggaagaaaaagtaagaaaaatgggcagatgtg
caagaactagtgctacaccagcaggataccaacaaacagagaagatggat
gttttaaaaagaaaagacaggggcaaagataccaaaaaaaatacttgaag
acatgatggataaaagttattgatgttgataaattaacttcttaatctaa
taaaccttacaaattcaaactgataaattcaaaggtaggaatgccatgtg
tgtgcctgcacactcatcacttacacctatattcacataacacacacaca
catacacacacacacaaattgtttaaattgaaatatatatgattcaaatc
acctccaaagcatggggagtgactatgttcatagcaccaattattattaa
atatagcattgatatgagaaagggaaatgatacaataataatataaatta
ctactcagaacatgaaagtgttcaaaataaaggtgcgggaggggtatgag
tgtgctttgaggatagcaatttgaatgttaaatgagaaaattcttataaa
aacattgcaagaaaacttgttagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81180326_81181445
seq2: B6Ng01-224J21.b_51_1156

seq1  GAATTCAGAGTTTCACACTGGAAAAAGGATATATGTTCTTTTCTCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTTCACACTGGAAAAAGGATATATGTTCTTTTCTCTTTGA  50

seq1  CTCAGCTTAAAGATGCGGCAATTGAGAAGGACTCATAAAGAAAAAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTAAAGATGCGGCAATTGAGAAGGACTCATAAAGAAAAAGCTGG  100

seq1  ATCATAAATGGTAGTATTGCAATAATGTAACACATGGACTGTCAGGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATGGTAGTATTGCAATAATGTAACACATGGACTGTCAGGTATC  150

seq1  TTGGTTTTGGCTACTGGGCATTTTCTTTATATATGTAGTTGTCTTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGGCTACTGGGCATTTTCTTTATATATGTAGTTGTCTTTAAAA  200

seq1  TGTTTTCCAGAATATAAGAAGAGAATGGAAGCTACTTGCCTCTATACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAGAATATAAGAAGAGAATGGAAGCTACTTGCCTCTATACCTT  250

seq1  GTAGTTTTAATAACATTTGTTCAGTTAAAAGTATTGGTTATGAGAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTAATAACATTTGTTCAGTTAAAAGTATTGGTTATGAGAATTGT  300

seq1  GAGTATGAATCTCCCAGGAATTTTGACTGAAATGTCAAACAAAATAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGAATCTCCCAGGAATTTTGACTGAAATGTCAAACAAAATAGGTT  350

seq1  GTAGATATCATTAGTTACATAAGGTAGTATGAAAAGAAACCTAATCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATCATTAGTTACATAAGGTAGTATGAAAAGAAACCTAATCATTT  400

seq1  ATCCTGTCCTATTCCTTTTTGTTTAGGGTTTAATCACACATTCTACTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCCTATTCCTTTTTGTTTAGGGTTTAATCACACATTCTACTATG  450

seq1  AACAGTCAACATAAAACAAAACAAAACAAAACAAAACAAGAGGACCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAACATAAAACAAAACAAAACAAAACAAAACAAGAGGACCAATA  500

seq1  TATTTAAACCAATATCCCATTATGACTACCAATTATGACTAATATTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACCAATATCCCATTATGACTACCAATTATGACTAATATTCTTA  550

seq1  TTTCAACTGATTGCTTGTTTCATTTCCCATTTGATTCCCAGGATTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTGATTGCTTGTTTCATTTCCCATTTGATTCCCAGGATTTCTAC  600

seq1  TGTTACAGTTGAACAAACAGAGAAATTTCAATTTGGCACAGATGTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGTTGAACAAACAGAGAAATTTCAATTTGGCACAGATGTTAAGA  650

seq1  GAAGATCCATAAGCATTTTGCTTCACTTGTGATATTTATTTTCTATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCCATAAGCATTTTGCTTCACTTGTGATATTTATTTTCTATATGG  700

seq1  ATCATTTATTAAATATAATGACAATAACAAAAACAATTTTCCCATTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATTAAATATAATGACAATAACAAAAACAATTTTCCCATTCTCC  750

seq1  TTTTTTTCC-TTTTTTTTTTGTTTGTTTTTCGAGATAGGGTTTCTCTGTA  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCTTTTTTTTTTTGTTTGTTTTTCGAGATAGGGTTTCTCTGTA  800

seq1  TAGCCCTGGCTGTCTTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCTTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  850

seq1  TCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGC  900

seq1  GCCACCTACATTCTCTTTAGGAATAAAAATTTTC-TCTTTAAAACTTTAC  948
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  GCCACCTACATTCTC-TTAGGAATAAAAATTTTCTTCTTTAAAACTTTAC  949

seq1  TATAACCACTCTGATGTAAAAAATAAATCTTGTTCATATCTCATGCTTAG  998
      ||||| ||||||||||| ||||||||||||   |||||||||||||||||
seq2  TATAA-CACTCTGATGT-AAAAATAAATCT--GTCATATCTCATGCTTAG  995

seq1  AGATTCTTTAGTTAAACTTTCTATGGGACACTACAGCTAAGGGTCTTTAA  1048
      ||| ||||||||| |||||||||||||||||||||||||| ||||||| |
seq2  AGA-TCTTTAGTT-AACTTTCTATGGGACACTACAGCTAA-GGTCTTT-A  1041

seq1  GCAAAGTCTTCATTTTCTGATGAAAATTTGACTTCATTCAGACCCCT-GA  1097
      || ||||| ||| ||||||||||||  ||||| ||| || ||||| | ||
seq2  GC-AAGTC-TCAATTTCTGATGAAA--TTGACCTCA-TCGGACCCTTGGA  1086

seq1  GTGGAATCAGAAAGTGATAGAAA  1120
      |||  ||||| ||||||||||||
seq2  GTG--ATCAG-AAGTGATAGAAA  1106

seq1: chr3_81346467_81347644
seq2: B6Ng01-224J21.g_67_1241 (reverse)

seq1  AGCT-ACAATTTTTCTT-CATGTTTTTTATTAGATATTTTCTTCATTT-A  47
      |||| |||| ||||||| ||   ||||||| ||| |||||| |||||| |
seq2  AGCTAACAAGTTTTCTTGCAATGTTTTTATAAGA-ATTTTC-TCATTTAA  48

seq1  CATTTCAAATGCTATCCTCAAAGC-CACTCATA-CCCTCCCGCACCCTTT  95
      ||||  || ||||||||||||||| |||||||| |||||||||| |||||
seq2  CATTCAAATTGCTATCCTCAAAGCACACTCATACCCCTCCCGCA-CCTTT  97

seq1  ATTTTTAAAACACTTTCATTGTTCTGAGTAGTAATTT-TATAATTATTAT  144
      |||||   |||||||||| |||||||||||||||||| ||| |||||  |
seq2  ATTTT--GAACACTTTCA-TGTTCTGAGTAGTAATTTATATTATTAT--T  142

seq1  GTATCATTTCCTTTCTTCATTATCAATGCTATA-TTAATAATTATTTTGG  193
      ||||||||||| ||  ||| ||||||||||||| |||||||| |  ||||
seq2  GTATCATTTCCCTTTCTCA-TATCAATGCTATATTTAATAATAA--TTGG  189

seq1  TGCTATGAACATAGTCACT-CCCATGCTTTGGAGGTGATTTGAATCATAT  242
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCTATGAACATAGTCACTCCCCATGCTTTGGAGGTGATTTGAATCATAT  239

seq1  ATATTTCAATTTAAACAATTTGTGTGTGTGTGTATGTGTGTGTGTGTTAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAATTTAAACAATTTGTGTGTGTGTGTATGTGTGTGTGTGTTAT  289

seq1  GTGAATATAGGTGTAAGTGATGAGTGTGCAGGCACACACATGGCATTCCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATAGGTGTAAGTGATGAGTGTGCAGGCACACACATGGCATTCCT  339

seq1  ACCTTTGAATTTATCAGTTTGAATTTGTAAGGTTTATTAGATTAAGAAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAATTTATCAGTTTGAATTTGTAAGGTTTATTAGATTAAGAAGT  389

seq1  TAATTTATCAACATCAATAACTTTTATCCATCATGTCTTCAAGTATTTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATCAACATCAATAACTTTTATCCATCATGTCTTCAAGTATTTTT  439

seq1  TTTGGTATCTTTGCCCCTGTCTTTTCTTTTTAAAACATCCATCTTCTCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATCTTTGCCCCTGTCTTTTCTTTTTAAAACATCCATCTTCTCTG  489

seq1  TTTGTTGGTATCCTGCTGGTGTAGCACTAGTTCTTGCACATCTGCCCATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGTATCCTGCTGGTGTAGCACTAGTTCTTGCACATCTGCCCATT  539

seq1  TTTCTTACTTTTTCTTCCTGCTTATCAGAGTGATTGATAACGTTTCTGAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACTTTTTCTTCCTGCTTATCAGAGTGATTGATAACGTTTCTGAT  589

seq1  ATGTTTTCAAAGTTAAAGTAAATTTCATCAATTTTCTGCCACATCCAGTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCAAAGTTAAAGTAAATTTCATCAATTTTCTGCCACATCCAGTA  639

seq1  CTTTGTAGAGCACTTCCAATGCATTTTTCATTTCAGTTGGAGTTACAACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGAGCACTTCCAATGCATTTTTCATTTCAGTTGGAGTTACAACT  689

seq1  TCAATTTAATCTTTGTTACATGTTTCGTTTTGAAATCTGTATTCTTTGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTAATCTTTGTTACATGTTTCGTTTTGAAATCTGTATTCTTTGAT  739

seq1  TTACTGAGACACCATATTCATTTTCTTAACTTTAGAGTACTATTTCTTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGACACCATATTCATTTTCTTAACTTTAGAGTACTATTTCTTTA  789

seq1  TAATATTTAATGCACTTTAAATTATTATTAATATATGTTATATCTAACAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTAATGCACTTTAAATTATTATTAATATATGTTATATCTAACAT  839

seq1  TTCGTTACCTTCATACATAGTTTATCTTGCCTGAATATTTTCGAACCTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTACCTTCATACATAGTTTATCTTGCCTGAATATTTTCGAACCTAT  889

seq1  GTGCATTTCAATGATTTTTTGATTCTGTTTTATTCATTAGTTTTGTAGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTCAATGATTTTTTGATTCTGTTTTATTCATTAGTTTTGTAGTT  939

seq1  TATGTTTCAATATATTTTGTTTTAACATAGTCATCACATAATTAAGCATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCAATATATTTTGTTTTAACATAGTCATCACATAATTAAGCATA  989

seq1  TAAATTTGAGAAAATGAAACATTTAACATAATGTAATATAGAAATTTAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGAGAAAATGAAACATTTAACATAATGTAATATAGAAATTTAGG  1039

seq1  AAACCAGTATTTTTTTCTGTCCTTCCAGTTTATTGTTATTTTGTTGTCAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTATTTTTTTCTGTCCTTCCAGTTTATTGTTATTTTGTTGTCAT  1089

seq1  GGCAGCTCCAATTTGTGATGTTCTTTCCTTGTTCTCTACCATTCCTTCAG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCCAATTTGTGATGTTCTTTCCTTGTTCTCTACCATTCCTTCAG  1139

seq1  TGGAATTATGCTTTTTTTTCTTCTAGATAGGAATTC  1178
      ||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATGCTTTTTTTTCTTCTAGATAGGAATTC  1175