BAC Information

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BAC

Clone NameB6Ng01-224P04
Chromosome3 (Build37)
Map Location 20,863,831 - 20,864,954
singlet/doubletsinglet
Overlap genenone
Upstream geneCp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224P04.bB6Ng01-224P04.g
ACCGA039267GA039268
length1,1841,143
definitionB6Ng01-224P04.b B6Ng01-224P04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttgatggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttaaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctatacagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtctggcatggtgattccgccagaagttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagacaa
atttgcaaattgctccttccaattcgttgaagaattgagttggaattttg
atggggattgcaatgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtttttatcatac
agatctttcacttccttagtaagagtcactccgagatattttatattatt
gtgactattgagacggtgtgtttccctaatttctttctctgctgtttatt
cttgtgtagagaaaggccattgactgttgagttaattatatccagctact
tcaacctagctgtttatcagttaggagtctctgttgaatttttaggtcac
ttaatatactatcctatcatctgccaaaggtgaaatttgacttccccttg
cgatgtatcccgtgagtacttccgttagtggtcg

gaattccagtttcccagggcacggactgcattgaaaagaaacattcttga
agtctgcctgcctgtaaagcccagtgctttgaacaatcactccatggggt
tttgtaagaaaatcatacttggaaatgataaaattgagtgcacccttcca
ctctattcattctctctgcacctgagtacagcacttttctttaccaattc
tctccttaaataaggggcaatatcacactctgtgcttacagttgtgctaa
ccctgtgtttccatttcaggtcttctttctagtcctcattaagaagatat
ttaacttttctaagcatctcgttcttcatctacaaaaattggaatgacaa
ttcttatctcattgactgtttaaaaggcaggtttagatattgcacacaaa
acatttatcatgtcttaagtagaatgaaccctggttacacagtagccagc
ttcatgaagataatataacttttaaaggaggtatgccttctgactacaat
aacactctttttctttaaattggtaagtgccaactgtaaaccccttcttt
attttgtagctcacagctgttttcaagaccagttcttgatgccaataaga
taatgaccacatggtgaaacagaagcatattcatctttcatgtccagaat
ggacacagtaaacaatcatgttagatccatccaagatcccaagtcccaac
agtcacttaatacctttgacagctgtcacactattcatccagtcccctag
tgcttctttgtccccagtaccatggccagagtcagacctacacttctact
tccatgctgactgctgctgctgactgcaatcccacgtctccttttccttc
tttgacttgacagagaataatttcacttattcattctgttaccatttcat
atactggtcccccatcttagtttgcagcatttcttaaaataataatatgt
ttcataaaatgtaacaagtttactggggagtccagaaggaaaagaattct
aaatggtccttttgatttatgatttattttcctctctaaaaaataatatt
cttgtatgatttacaataaatctttatattaccagaattaaaggtaaaat
tgagtggagatgaatatccctcaaacaggtgagtaccttggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_20863831_20864954
seq2: B6Ng01-224P04.g_66_1208 (reverse)

seq1  TGCC-AGGTACTTCACTGTTTGAGGTA---TCATCTCAACCTCAATTTTA  46
      |||| |||||||   |||||||||| |   ||||||| | ||||||||||
seq2  TGCCAAGGTACTCACCTGTTTGAGGGATATTCATCTCCA-CTCAATTTTA  49

seq1  C--TTTATTCTGGT-ATAT-AAGATTTATTGT-AATCATACAGATATA--  89
      |  || |||||||| |||| |||||||||||| |||||||||   |||  
seq2  CCTTTAATTCTGGTAATATAAAGATTTATTGTAAATCATACAAGAATATT  99

seq1  --TTTTTAGAGAG--AAATAAATCATAAATCAAAAGGA-CATTTAG-ATT  133
        |||||||||||  ||||||||||||||||||||||| ||||||| |||
seq2  ATTTTTTAGAGAGGAAAATAAATCATAAATCAAAAGGACCATTTAGAATT  149

seq1  CTTTT-CTTCTTGACT-CCCAGTAAACTTTGTACATTTTATGAAACATA-  180
      ||||| ||||| |||| ||||||||||||  |||||||||||||||||| 
seq2  CTTTTCCTTCTGGACTCCCCAGTAAACTTGTTACATTTTATGAAACATAT  199

seq1  TATTATTTTAAGAAATGCTGCAAACTAAGATGGGGGACCAGTATATGAAA  230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTAAGAAATGCTGCAAACTAAGATGGGGGACCAGTATATGAAA  249

seq1  TGGTAACAGAATGAATAAGTGAAATTATTCTCTGTCAAGTCAAAGAAGGA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACAGAATGAATAAGTGAAATTATTCTCTGTCAAGTCAAAGAAGGA  299

seq1  AAAGGAGACGTGGGATTGCAGTCAGCAGCAGCAGTCAGCATGGAAGTAGA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGACGTGGGATTGCAGTCAGCAGCAGCAGTCAGCATGGAAGTAGA  349

seq1  AGTGTAGGTCTGACTCTGGCCATGGTACTGGGGACAAAGAAGCACTAGGG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGGTCTGACTCTGGCCATGGTACTGGGGACAAAGAAGCACTAGGG  399

seq1  GACTGGATGAATAGTGTGACAGCTGTCAAAGGTATTAAGTGACTGTTGGG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATGAATAGTGTGACAGCTGTCAAAGGTATTAAGTGACTGTTGGG  449

seq1  ACTTGGGATCTTGGATGGATCTAACATGATTGTTTACTGTGTCCATTCTG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGATCTTGGATGGATCTAACATGATTGTTTACTGTGTCCATTCTG  499

seq1  GACATGAAAGATGAATATGCTTCTGTTTCACCATGTGGTCATTATCTTAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAAGATGAATATGCTTCTGTTTCACCATGTGGTCATTATCTTAT  549

seq1  TGGCATCAAGAACTGGTCTTGAAAACAGCTGTGAGCTACAAAATAAAGAA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAAGAACTGGTCTTGAAAACAGCTGTGAGCTACAAAATAAAGAA  599

seq1  GGGGTTTACAGTTGGCACTTACCAATTTAAAGAAAAAGAGTGTTATTGTA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTACAGTTGGCACTTACCAATTTAAAGAAAAAGAGTGTTATTGTA  649

seq1  GTCAGAAGGCATACCTCCTTTAAAAGTTATATTATCTTCATGAAGCTGGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGGCATACCTCCTTTAAAAGTTATATTATCTTCATGAAGCTGGC  699

seq1  TACTGTGTAACCAGGGTTCATTCTACTTAAGACATGATAAATGTTTTGTG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTAACCAGGGTTCATTCTACTTAAGACATGATAAATGTTTTGTG  749

seq1  TGCAATATCTAAACCTGCCTTTTAAACAGTCAATGAGATAAGAATTGTCA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATCTAAACCTGCCTTTTAAACAGTCAATGAGATAAGAATTGTCA  799

seq1  TTCCAATTTTTGTAGATGAAGAACGAGATGCTTAGAAAAGTTAAATATCT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTTTGTAGATGAAGAACGAGATGCTTAGAAAAGTTAAATATCT  849

seq1  TCTTAATGAGGACTAGAAAGAAGACCTGAAATGGAAACACAGGGTTAGCA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAGGACTAGAAAGAAGACCTGAAATGGAAACACAGGGTTAGCA  899

seq1  CAACTGTAAGCACAGAGTGTGATATTGCCCCTTATTTAAGGAGAGAATTG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAAGCACAGAGTGTGATATTGCCCCTTATTTAAGGAGAGAATTG  949

seq1  GTAAAGAAAAGTGCTGTACTCAGGTGCAGAGAGAATGAATAGAGTGGAAG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAAAGTGCTGTACTCAGGTGCAGAGAGAATGAATAGAGTGGAAG  999

seq1  GGTGCACTCAATTTTATCATTTCCAAGTATGATTTTCTTACAAAACCCCA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTCAATTTTATCATTTCCAAGTATGATTTTCTTACAAAACCCCA  1049

seq1  TGGAGTGATTGTTCAAAGCACTGGGCTTTACAGGCAGGCAGACTTCAAGA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGATTGTTCAAAGCACTGGGCTTTACAGGCAGGCAGACTTCAAGA  1099

seq1  ATGTTTCTTTTCAATGCAGTCCGTGCCCTGGGAAACTGGAATTC  1124
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTTTCAATGCAGTCCGTGCCCTGGGAAACTGGAATTC  1143


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