BAC Information

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BAC

Clone NameB6Ng01-225P21
Chromosome3 (Build37)
Map Location 108,197,577 - 108,336,904
singlet/doubletdoublet
Overlap geneCelsr2, Sars, 5330417C22Rik
Upstream geneKcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1
Downstream gene1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225P21.bB6Ng01-225P21.g
ACCGA040046GA040047
length4351,158
definitionB6Ng01-225P21.b B6Ng01-225P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,197,577 - 108,198,017)(108,335,759 - 108,336,904)
sequence
tctggcacagggtgtcccagctgacaaccaatctctgcctgcatctccct
caagtcaaaatctcttttacccagtgatagcatttcctcccaagggaaca
cattccactctgccccctcctcctaacatgaaggtgtgcagagatgggaa
aaaggatgcccaggtaaaaaagcacagagagcaaacagcttccccttcca
tcagacccaggctccctcaccgaggtcagggtagacttagtggtcaaggc
agggtcgggactgggcttccggctgcaggcgaacttgagtgctttccgga
cctccttgctgagcaccacgtaggagaggaagatgaaggggccctggcag
gcagagacagccacggttggcacactcggcaccccaccccccaggcgtgc
tcgcatctactcagcaggggtgggggtggggatgg
gaattctatgttgtgtgcatattctgtctttagacttatttaaaccacaa
acatttgcttacgagtaagtgagtcgaaggcagtggaaaggtgttcaaca
ctccacagtttggggagctgtggaatgggcattctgctaacgacaacccc
agggatgcctgtcctgaagatggaaagataaaaatggacctcaaatacaa
aatagagttacttcacccctacttcttggctcagcctctttagctaggcc
cacaccccttgccatgttgaaatagctttggaggcatgctcgttggccag
gggcatcagcaagctctgtttacactctcctgagcaaacagcctctgaac
acccttgactcctaaataataaggaagagaatgagtgcagtattacaaag
ttcttcattaagcaatacgagctgatccagcaagtttgggggtttccaat
tcttaaacggtgaaaatctagtccgagggagactgtctcttctcagttct
tgattttcctatggatttctcgggagcctatgtagggtatcaatgccagg
gcctcttatcaaactaaggctgctcctagtgatagcactgctgccatgga
ctatttataaaggctgagccctccgaccggattgaagcaggaagaaggga
gacttggctggaggttttattgaggtggcagagcacagggagaggaaact
gctggaggtgtgccagggcttggcactcctgtctcaggtttacaataatc
agggtcacccagtggaactaaacatcctggatgctgtttgtccacatgag
tcactcctttggtgctgtgctgggccccagctaattgccgactgaaaccc
aaacagtttttttgtttttgtttttgtttttttttaacatagtgcaacaa
atccaaataagaggagaggagcagaaaaactggcctctggtattggtctg
cccttgtcctgaggctgctgtgctaatagccccagaagggacttccaatc
catactgaaggccagggggggccctagaaatcctgcagacacagaattgg
aaatacgattgtcgaggtgatggataactctggccatttagttaaggaat
tcaggatctatagcttctggaacggcttcgacttctgtacctataaatgg
agggagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108197577_108198017
seq2: B6Ng01-225P21.b_48_488

seq1  GAATTCTCTGGCACAGGGTGTCCCAGCTGACAACCAATCTCTGCCTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCACAGGGTGTCCCAGCTGACAACCAATCTCTGCCTGCAT  50

seq1  CTCCCTCAAGTCAAAATCTCTTTTACCCAGTGATAGCATTTCCTCCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAAGTCAAAATCTCTTTTACCCAGTGATAGCATTTCCTCCCAAG  100

seq1  GGAACACATTCCACTCTGCCCCCTCCTCCTAACATGAAGGTGTGCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACATTCCACTCTGCCCCCTCCTCCTAACATGAAGGTGTGCAGAGA  150

seq1  TGGGAAAAAGGATGCCCAGGTAAAAAAGCACAGAGAGCAAACAGCTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAAGGATGCCCAGGTAAAAAAGCACAGAGAGCAAACAGCTTCCC  200

seq1  CTTCCATCAGACCCAGGCTCCCTCACCGAGGTCAGGGTAGACTTAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCAGACCCAGGCTCCCTCACCGAGGTCAGGGTAGACTTAGTGGT  250

seq1  CAAGGCAGGGTCGGGACTGGGCTTCCGGCTGCAGGCGAACTTGAGTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGGTCGGGACTGGGCTTCCGGCTGCAGGCGAACTTGAGTGCTT  300

seq1  TCCGGACCTCCTTGCTGAGCACCACGTAGGAGAGGAAGATGAAGGGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGACCTCCTTGCTGAGCACCACGTAGGAGAGGAAGATGAAGGGGCCC  350

seq1  TGGCAGGCAGAGACAGCCACGGTTGGCACACTCGGCACCCCACCCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCAGAGACAGCCACGGTTGGCACACTCGGCACCCCACCCCCCAG  400

seq1  GCGTGCTCGCATCTACTCAGCAGGGGTGGGGGTGGGGATGG  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTCGCATCTACTCAGCAGGGGTGGGGGTGGGGATGG  441

seq1: chr3_108335759_108336904
seq2: B6Ng01-225P21.g_70_1227 (reverse)

seq1  GACTCCCTCCATTTTATAGG-ACAGAAGTCGGAGGC-TGTCAGAAGTTAA  48
      ||||||||||| |||||||| |||||||||| || | |  |||||| || 
seq2  GACTCCCTCCA-TTTATAGGTACAGAAGTCGAAGCCGTTCCAGAAGCTAT  49

seq1  TGATCTTG-ATTCCTT-ACTAAATGGCAAGAGTTATCACTCA-CTCAACA  95
       |||| || ||||||| |||||||||| |||||||||  ||| ||| || 
seq2  AGATCCTGAATTCCTTAACTAAATGGCCAGAGTTATCCATCACCTCGAC-  98

seq1  AATCGTA-TTCCAA-TCTGTGTCTGCCAGATTCCTAGGGCCCCCTGGGCC  143
      ||||||| |||||| |||||||||||  |||| |||||||||||   | |
seq2  AATCGTATTTCCAATTCTGTGTCTGCAGGATTTCTAGGGCCCCCCCTGGC  148

seq1  TTTCAGTATGGATTGGGAAGTCCC-TCTGGGGCTATTAGCACAGCAGCCT  192
       ||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  CTTCAGTATGGATT-GGAAGTCCCTTCTGGGGCTATTAGCACAGCAGCCT  197

seq1  CAGGAC-AGGGCAGACC-ATACCAGA-GCCAG-TTTTCTGCTCCTCTCCT  238
      |||||| |||||||||| |||||||| ||||| |||||||||||||||||
seq2  CAGGACAAGGGCAGACCAATACCAGAGGCCAGTTTTTCTGCTCCTCTCCT  247

seq1  TTTATTTGGATTTGTTGCACTATGTT-AAAAAAAACAAAAACAAAAAC-A  286
       ||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  CTTATTTGGATTTGTTGCACTATGTTAAAAAAAAACAAAAACAAAAACAA  297

seq1  AAAAACTGTTTGGGTTTCAGTCGGCAATTAGCTGGGG-CCAGCACAGCAC  335
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAACTGTTTGGGTTTCAGTCGGCAATTAGCTGGGGCCCAGCACAGCAC  347

seq1  CAAAGGAGTGACTCATGTGGACAAACAGCATCCAGGATGTTTAGTTCCAC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGTGACTCATGTGGACAAACAGCATCCAGGATGTTTAGTTCCAC  397

seq1  TGGGTGACCCTGATTATTGTAAACCTGAGACAGGAGTGCCAAGCCCTGGC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACCCTGATTATTGTAAACCTGAGACAGGAGTGCCAAGCCCTGGC  447

seq1  ACACCTCCAGCAGTTTCCTCTCCCTGTGCTCTGCCACCTCAATAAAACCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCAGCAGTTTCCTCTCCCTGTGCTCTGCCACCTCAATAAAACCT  497

seq1  CCAGCCAAGTCTCCCTTCTTCCTGCTTCAATCCGGTCGGAGGGCTCAGCC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAGTCTCCCTTCTTCCTGCTTCAATCCGGTCGGAGGGCTCAGCC  547

seq1  TTTATAAATAGTCCATGGCAGCAGTGCTATCACTAGGAGCAGCCTTAGTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATAGTCCATGGCAGCAGTGCTATCACTAGGAGCAGCCTTAGTT  597

seq1  TGATAAGAGGCCCTGGCATTGATACCCTACATAGGCTCCCGAGAAATCCA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGAGGCCCTGGCATTGATACCCTACATAGGCTCCCGAGAAATCCA  647

seq1  TAGGAAAATCAAGAACTGAGAAGAGACAGTCTCCCTCGGACTAGATTTTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAATCAAGAACTGAGAAGAGACAGTCTCCCTCGGACTAGATTTTC  697

seq1  ACCGTTTAAGAATTGGAAACCCCCAAACTTGCTGGATCAGCTCGTATTGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTTAAGAATTGGAAACCCCCAAACTTGCTGGATCAGCTCGTATTGC  747

seq1  TTAATGAAGAACTTTGTAATACTGCACTCATTCTCTTCCTTATTATTTAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAGAACTTTGTAATACTGCACTCATTCTCTTCCTTATTATTTAG  797

seq1  GAGTCAAGGGTGTTCAGAGGCTGTTTGCTCAGGAGAGTGTAAACAGAGCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGGGTGTTCAGAGGCTGTTTGCTCAGGAGAGTGTAAACAGAGCT  847

seq1  TGCTGATGCCCCTGGCCAACGAGCATGCCTCCAAAGCTATTTCAACATGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGCCCCTGGCCAACGAGCATGCCTCCAAAGCTATTTCAACATGG  897

seq1  CAAGGGGTGTGGGCCTAGCTAAAGAGGCTGAGCCAAGAAGTAGGGGTGAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGTGTGGGCCTAGCTAAAGAGGCTGAGCCAAGAAGTAGGGGTGAA  947

seq1  GTAACTCTATTTTGTATTTGAGGTCCATTTTTATCTTTCCATCTTCAGGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTATTTTGTATTTGAGGTCCATTTTTATCTTTCCATCTTCAGGA  997

seq1  CAGGCATCCCTGGGGTTGTCGTTAGCAGAATGCCCATTCCACAGCTCCCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCCCTGGGGTTGTCGTTAGCAGAATGCCCATTCCACAGCTCCCC  1047

seq1  AAACTGTGGAGTGTTGAACACCTTTCCACTGCCTTCGACTCACTTACTCG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGGAGTGTTGAACACCTTTCCACTGCCTTCGACTCACTTACTCG  1097

seq1  TAAGCAAATGTTTGTGGTTTAAATAAGTCTAAAGACAGAATATGCACACA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATGTTTGTGGTTTAAATAAGTCTAAAGACAGAATATGCACACA  1147

seq1  ACATAGAATTC  1146
      |||||||||||
seq2  ACATAGAATTC  1158