BAC Information

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BAC

Clone NameB6Ng01-226C08
Chromosome3 (Build37)
Map Location 118,557,591 - 118,731,722
singlet/doubletdoublet
Overlap geneDpyd
Upstream geneSnx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226C08.bB6Ng01-226C08.g
ACCGA040160GA040161
length1,1511,128
definitionB6Ng01-226C08.b B6Ng01-226C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,730,562 - 118,731,722)(118,557,591 - 118,558,709)
sequence
gaattcaaagaatgggaagtctttgaaatacacaggcttttggatatcaa
attacctttgaaatcccccacccagaagtatctctaacaaagtccatttg
aaatactgcttcaatattctaaaaaaatcaataatttaaaaacacaggtt
gaacgtttttactgcttccactgcaggctgtcatttttcgaaatgaaaat
actaatggcaccgaaggggaaagcactaagcagagaagacgcatgaacgg
aaccttggattggttagactggctggtttgatctcttcctccctccctca
tctgtgacaaaatgtcttttaaaatcaacaacttgcctttggtattccta
aagtatgtacttctgtgttgtacactgcatccatctctatagagtgtgct
gaacggagactctgtagtaaatatggatacagagatgtaatactgagtag
gctgtattatttcagcacagtctgtaacattgggacacctttaacatatt
aacctggagcgctagggagaggcggatccctcagtactaatgggttttca
tattcttagctctatattaaagcacatgcagtgaagggtctgatggaaat
ccagaactcttaggactttaattcagaaaaaaattacttctgaaatgcat
ttgtattatttaaagttttgtgaagcaatagcatcagtccagaacctctt
tataaagattcccactttaactccgtactaccaaatataccacctcccct
ctaataaatggtgaatttcaagggaggatcattttgtcaaagatttagga
attgggattcatggagtgcaaaaagaaagggccaggagattaaagacaac
caaaggggtctggagaaattactcagccaataagaatggttgctgcatag
tcaaggcaacaggagttcagatcccagcaccaaaagaagccaggggccca
cacacaaatgtaaccatgggttctgaagaagcagaggcaggaagatgtct
atggcttcctggttttcagccttgctgagaaataggaactctatagagag
caggtctgctcaaaggaattgccagagaataaaaaagactcatcaacatc
tcctctagctttcttgttcgagccataccgtgtgtactgagaacaacact
c

gaattcattcatgtatatgtacacacacacacacacacacacacacacac
acacacacacacaattttctggaggttcaaaacaaaactttgtaattagt
aacaaattagtaagaaaaccaaaaggaatgtgtgacttgtacaaatttga
tatcattcaaattctgtgctagagttacttctttttcaattggatatatg
ccaggaatagtttcttagccatgtgtgtgctgtttctatcctcaggcttt
taaggaccatctgagattaattagcaattgcacaaacatccaacattctg
aaacaatcttgagtatttttgccttaaaaacagtcaaccctcccatgcaa
aaatcgatgttatagattataatatgaaagtgacgccatctctaaatatg
gtaaacaaaaatctggatactgtaattttgcccaaagcaacaaacagcta
ttttaataaaggttgcatctcacacacctgtaatactagaatgtataaaa
atgagacagtaaaatttatactatttttggcttaaagtttctccagtgag
attctaaataataatgataaatagcaatgtcccattatgactaatagtcc
aagataggcttttaacatgctgtatgccttaaaatactttgttaagctca
tccatgcttgggttttgagcaagttcagatgtatatctgtaagatcggca
agcagcatgactaattatccctaagtgcatttatcattaaataaacctca
caggagacagaacgattgtttatcttagcagtataagactggggatggta
gattgctctagaacatgagattacattgccagaatggcgctatttattaa
gctatgataacgctaatgttcctctttgatgtatagcgtgtgcgacttca
gctgaacttgtagagagccttaaaggatgtttcattgaacatttagtatg
gcagccagccagaatacatttagcttaagcccagatgacgggctggtaat
gaggtagtgattgatgaccgcagcttccttatgaaaaccttgcttgatat
gctgggggaatgcaattgctgaactctttttcaatttcccctccctgtga
atataagtaattttttactgtagaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118730562_118731722
seq2: B6Ng01-226C08.b_45_1195 (reverse)

seq1  GAGTGTGTGTCTCAGTACACACGGGTAT-GCTCGGACAAGAAAGCTAGAG  49
      ||||||   ||||||||||||| ||||| ||||| |||||||||||||||
seq2  GAGTGTTGTTCTCAGTACACAC-GGTATGGCTCGAACAAGAAAGCTAGAG  49

seq1  GAGGATGTTGGATGGAGGTCTTTTTTTATTCTCTGCCAATTCCTTTGAGG  99
      || |||||| ||||   ||| |||||||||||||| |||||||||||| |
seq2  GA-GATGTT-GATG--AGTC-TTTTTTATTCTCTGGCAATTCCTTTGA-G  93

seq1  CAGGACCTTGCTCTCTATTAAGAGTTCCTATTTTCTCAGCAAGGCTGAAA  149
      || |||| ||||||||||  |||||||||| |||||||||||||||||||
seq2  CA-GACC-TGCTCTCTAT--AGAGTTCCTA-TTTCTCAGCAAGGCTGAAA  138

seq1  ACCAGGAAGCCATAGACATCTTCCTGCCTCTGCTTCTTTCAGAA-CCATG  198
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  ACCAGGAAGCCATAGACATCTTCCTGCCTCTGCTTC-TTCAGAACCCATG  187

seq1  GTTACATTTGTGTGTGGGCCCCTGGCTTCTTTTGGTGCTGGGATCTGAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTTGTGTGTGGGCCCCTGGCTTCTTTTGGTGCTGGGATCTGAAC  237

seq1  TCCTGTTGCCTTGACTATGCAGCAACCATTCTTATTGGCTGAGTAATTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGCCTTGACTATGCAGCAACCATTCTTATTGGCTGAGTAATTTC  287

seq1  TCCAGACCCCCTTGGTTGTCTTTAATCTCCTGGCCC-TTCTTTTTGCACT  347
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TCCAGACCCCTTTGGTTGTCTTTAATCTCCTGGCCCTTTCTTTTTGCACT  337

seq1  CCATGAATCCCAATTCCTAAATCTTTGACAAAATGATCCTCCCTTGAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATCCCAATTCCTAAATCTTTGACAAAATGATCCTCCCTTGAAAT  387

seq1  TCACCATTTATTAGAGGGGAGGTGGTATATTTGGTAGTACGGAGTTAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTTATTAGAGGGGAGGTGGTATATTTGGTAGTACGGAGTTAAAG  437

seq1  TGGGAATCTTTATAAAGAGGTTCTGGACTGATGCTATTGCTTCACAAAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCTTTATAAAGAGGTTCTGGACTGATGCTATTGCTTCACAAAAC  487

seq1  TTTAAATAATACAAATGCATTTCAGAAGTAATTTTTTTCTGAATTAAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAATACAAATGCATTTCAGAAGTAATTTTTTTCTGAATTAAAGT  537

seq1  CCTAAGAGTTCTGGATTTCCATCAGACCCTTCACTGCATGTGCTTTAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGTTCTGGATTTCCATCAGACCCTTCACTGCATGTGCTTTAATA  587

seq1  TAGAGCTAAGAATATGAAAACCCATTAGTACTGAGGGATCCGCCTCTCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTAAGAATATGAAAACCCATTAGTACTGAGGGATCCGCCTCTCCC  637

seq1  TAGCGCTCCAGGTTAATATGTTAAAGGTGTCCCAATGTTACAGACTGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCTCCAGGTTAATATGTTAAAGGTGTCCCAATGTTACAGACTGTGC  687

seq1  TGAAATAATACAGCCTACTCAGTATTACATCTCTGTATCCATATTTACTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATACAGCCTACTCAGTATTACATCTCTGTATCCATATTTACTA  737

seq1  CAGAGTCTCCGTTCAGCACACTCTATAGAGATGGATGCAGTGTACAACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTCCGTTCAGCACACTCTATAGAGATGGATGCAGTGTACAACAC  787

seq1  AGAAGTACATACTTTAGGAATACCAAAGGCAAGTTGTTGATTTTAAAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACATACTTTAGGAATACCAAAGGCAAGTTGTTGATTTTAAAAGA  837

seq1  CATTTTGTCACAGATGAGGGAGGGAGGAAGAGATCAAACCAGCCAGTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCACAGATGAGGGAGGGAGGAAGAGATCAAACCAGCCAGTCTA  887

seq1  ACCAATCCAAGGTTCCGTTCATGCGTCTTCTCTGCTTAGTGCTTTCCCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCCAAGGTTCCGTTCATGCGTCTTCTCTGCTTAGTGCTTTCCCCT  937

seq1  TCGGTGCCATTAGTATTTTCATTTCGAAAAATGACAGCCTGCAGTGGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGCCATTAGTATTTTCATTTCGAAAAATGACAGCCTGCAGTGGAAG  987

seq1  CAGTAAAAACGTTCAACCTGTGTTTTTAAATTATTGATTTTTTTAGAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAACGTTCAACCTGTGTTTTTAAATTATTGATTTTTTTAGAATA  1037

seq1  TTGAAGCAGTATTTCAAATGGACTTTGTTAGAGATACTTCTGGGTGGGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAGTATTTCAAATGGACTTTGTTAGAGATACTTCTGGGTGGGGG  1087

seq1  ATTTCAAAGGTAATTTGATATCCAAAAGCCTGTGTATTTCAAAGACTTCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGGTAATTTGATATCCAAAAGCCTGTGTATTTCAAAGACTTCC  1137

seq1  CATTCTTTGAATTC  1161
      ||||||||||||||
seq2  CATTCTTTGAATTC  1151


seq1: chr3_118557591_118558709
seq2: B6Ng01-226C08.g_67_1194

seq1  GAATTCATTCATGTATATGTACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATGTATATGTACACACACACACACACACACACACACACAC  50

seq1  ACACACACACACAATTTTCTGGAGGTTCAAAACAAAACTTTGTAATTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAATTTTCTGGAGGTTCAAAACAAAACTTTGTAATTAGT  100

seq1  AACAAATTAGTAAGAAAACCAAAAGGAATGTGTGACTTGTACAAATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTAGTAAGAAAACCAAAAGGAATGTGTGACTTGTACAAATTTGA  150

seq1  TATCATTCAAATTCTGTGCTAGAGTTACTTCTTTTTCAATTGGATATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCAAATTCTGTGCTAGAGTTACTTCTTTTTCAATTGGATATATG  200

seq1  CCAGGAATAGTTTCTTAGCCATGTGTGTGCTGTTTCTATCCTCAGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATAGTTTCTTAGCCATGTGTGTGCTGTTTCTATCCTCAGGCTTT  250

seq1  TAAGGACCATCTGAGATTAATTAGCAATTGCACAAACATCCAACATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCATCTGAGATTAATTAGCAATTGCACAAACATCCAACATTCTG  300

seq1  AAACAATCTTGAGTATTTTTGCCTTAAAAACAGTCAACCCTCCCATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCTTGAGTATTTTTGCCTTAAAAACAGTCAACCCTCCCATGCAA  350

seq1  AAATCGATGTTATAGATTATAATATGAAAGTGACGCCATCTCTAAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGATGTTATAGATTATAATATGAAAGTGACGCCATCTCTAAATATG  400

seq1  GTAAACAAAAATCTGGATACTGTAATTTTGCCCAAAGCAACAAACAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAAAATCTGGATACTGTAATTTTGCCCAAAGCAACAAACAGCTA  450

seq1  TTTTAATAAAGGTTGCATCTCACACACCTGTAATACTAGAATGTATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAAGGTTGCATCTCACACACCTGTAATACTAGAATGTATAAAA  500

seq1  ATGAGACAGTAAAATTTATACTATTTTTGGCTTAAAGTTTCTCCAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGTAAAATTTATACTATTTTTGGCTTAAAGTTTCTCCAGTGAG  550

seq1  ATTCTAAATAATAATGATAAATAGCAATGTCCCATTATGACTAATAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATAATAATGATAAATAGCAATGTCCCATTATGACTAATAGTCC  600

seq1  AAGATAGGCTTTTAACATGCTGTATGCCTTAAAATACTTTGTTAAGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGCTTTTAACATGCTGTATGCCTTAAAATACTTTGTTAAGCTCA  650

seq1  TCCATGCTTGGGTTTTGAGCAAGTTCAGATGTATATCTGTAAGATCGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTTGGGTTTTGAGCAAGTTCAGATGTATATCTGTAAGATCGGCA  700

seq1  AGCAGCATGACTAATTATCCCTAAGTGCATTTATCATTAAATAAACCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGACTAATTATCCCTAAGTGCATTTATCATTAAATAAACCTCA  750

seq1  CAGGAGACAGAACGATTGTTTATCTTAGCAGTATAAGACTGGGGATGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACAGAACGATTGTTTATCTTAGCAGTATAAGACTGGGGATGGTA  800

seq1  GATTGCTCTAGAACATGAGATTACATTGCCAGAATGGCGCTATTTATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTCTAGAACATGAGATTACATTGCCAGAATGGCGCTATTTATTAA  850

seq1  GCTATGATAACGCTAATGTTCCTCTTTGATGTATAGCGTGTGCGACTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATAACGCTAATGTTCCTCTTTGATGTATAGCGTGTGCGACTTCA  900

seq1  GCTGAACTTGTAGAGAGCCTT-AAGGATGTTTCATTGAACATTTAGTATG  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTGAACTTGTAGAGAGCCTTAAAGGATGTTTCATTGAACATTTAGTATG  950

seq1  GCAGCCAGCCAGAATACATTTAGCTTAAGCCCAGATGACGGGCTGGTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGCCAGAATACATTTAGCTTAAGCCCAGATGACGGGCTGGTAAT  1000

seq1  GAGGTAGTGATTGATGACCGCAGCTTCCTTATGAAAACC-TGCTTGATAT  1048
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGGTAGTGATTGATGACCGCAGCTTCCTTATGAAAACCTTGCTTGATAT  1050

seq1  GCTGGGGGGATGC-ATTGCTG-ACTC-TTTTCA--TTTCCCTCCCTGTG-  1092
      |||||||| |||| ||||||| |||| ||||||  || ||||||||||| 
seq2  GCTGGGGGAATGCAATTGCTGAACTCTTTTTCAATTTCCCCTCCCTGTGA  1100

seq1  ATATTAGTTA-TTTTTACTGTAGAAGTT  1119
      |||| ||| | |||||||||||||||||
seq2  ATATAAGTAATTTTTTACTGTAGAAGTT  1128


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