BAC Information

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BAC

Clone NameB6Ng01-226E21
Chromosome3 (Build37)
Map Location 99,907,753 - 100,058,879
singlet/doubletdoublet
Overlap geneSpag17, Wdr3, Gdap2
Upstream geneWars2, Tbx15, M6pr-ps, LOC623045
Downstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226E21.bB6Ng01-226E21.g
ACCGA040280GA040281
length1,1661,073
definitionB6Ng01-226E21.b B6Ng01-226E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,057,711 - 100,058,879)(99,907,753 - 99,908,816)
sequence
gaattcctgatagctccattgtaagaacaagacgctggacacctaaaaaa
tatctttgggaaggacaatctttcaaagaaacttaaaaaaaaaaatctta
tagcgatagaaaccacccaatggggagtatcctgccttgtggagaagtga
gttcccataactggaagtgattgaggctttctgggtgctgcagacagaat
tcctctattgggtggaaacttataccaaatgaccaccacgatcgatcgtt
accagctgttaaggttcaggacattacacctgccctttcaaactgctcag
ccatgctactgaggagatactggaaacccctgacttgtgtaccggttggc
tcctagcatctatcttcgaagcacagttgcttctgggaatagtgagcttt
aaacgcttagcttgtaatttattgggggttggcaacagagtggactaaaa
aaaaaaatctggaaggaaagaaaaggaaataaaaacaatattatttttta
ttaacaaattgtcataatatttgcaaaggaatttttatggaaacgaaaag
tcagccttctcctatcatcttaaaatttgacatcactcctgtgcacattt
gaccctctggatgcttttctttttaatgtaatgctggtaagaaatacctc
gtccgaagaaaccttgagggacaggctcagggcctgtctgccacaggctt
gctcatggtgtgggcagatacttgccaagtgacagtggtagcagaagagg
cctataaaggccttgacagtgagaggctgggagagatgcaggaaggaaag
aagcagctgagtcaaagtagaaaagctggctcagcttagcctggtggaag
gactactccctccttgggcaatgccatttgcccaatgcccattcctgaga
gctgctgttggggcctgttcaccctctcctctgctctacatcctggacct
ctttctgagggacactcagccaagcagcctctttttattacagtaggacc
agatgtgctcccaatccagatgtgctggcatcagtgagcaaatctcagaa
agtcataaagccaagccacaaatccagattagttgtttccagtgtttttc
cttgtttcttggaaagtagacaggtcctgtcttcttccatgctctctttc
cgtaaagctatgtagg
gaattctattccaagcacccacatgggacttccaaccatctgtaactcca
tttccaaggtatccaacaccctcttctggctaccttggggattaggtatt
catgtagcatacagacatacaagcaggcaaaatgctcacactcataaaat
ttgaaaaaaggagaggttacacctacttgagaagctgaggcaggaggatt
gtaagtttaggccagcctggccaacttagcaaaactgtgtatccaaagaa
aaagaacccacaaagacagaagatacttgtgctagttgtgatggtgagag
cctgtgagaagggaaggaaggagtaggcagccaaagtagagttgaagaga
agcaggtggcggaggtggctcagtggtgatggatgtgcttgctgcacagc
atacctggggtccatcatccagaaacccataagtgaagagctggatgtga
cagtgcattcctggaaacccagagctgtgggggcagaggcaggagggtcc
tggggcttgctggatagcaactctagccaaatttggtgagcctccagttc
agcaagagagtctgtctcaagagttaaagtggaaaagaattgagaaagag
accaaacatcaacatctgacctctgcatacctgtgcaatgcacccacaca
cacatacacacacacacacacacacacacacacacacagagagagagaga
gagagagagagagagagggagagagagagagagagagagaagaatgtgga
catatacatacaacatacatacatacatacatacatacatacatagaaaa
aatggtaaaaaaataattacttgggaaattcatcactgaagtgagtctgt
tgggctggtcaactgaatgggcatttggggaaaaaagaaaaagcaaggtt
gatccgaaagttagcttgtataacatgctgtggaggtaaagagttcttta
gttctctgtctcctctttctgccaggcagatatcatgatatggcacatgg
ctaggattgcataggagagtaatggaaattccacctggcttataatccat
ggaacttcttggtggcaaccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100057711_100058879
seq2: B6Ng01-226E21.b_47_1212 (reverse)

seq1  CCTACATAGCTTTAACCGAAAGAG-GCAT-GAAGAAGACCAAGACCCTGT  48
      ||||||||||||| || ||||||| |||| |||||||||  ||  |||||
seq2  CCTACATAGCTTT-ACGGAAAGAGAGCATGGAAGAAGAC--AGGACCTGT  47

seq1  CCTACTTCTCA--GAACAAG--AAAACACTGGAAACAACTAATCTGGGAT  94
       ||||||  ||   ||||||  ||||||||||||||||||||||| ||||
seq2  -CTACTTTCCAAGAAACAAGGAAAAACACTGGAAACAACTAATCT-GGAT  95

seq1  TTGT-GCTTGGCTTTATGACTTTCCTGAGATTTGCTCAACTGATGCCAGC  143
      |||| |||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TTGTGGCTTGGCTTTATGACTTT-CTGAGATTTGCTC-ACTGATGCCAGC  143

seq1  AACATCTGGATTGGGGAGCACATCTGGTCCTACTGTAATAAAAAGAGGGC  193
       ||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  -ACATCTGGATT-GGGAGCACATCTGGTCCTACTGTAATAAAAAGA-GGC  190

seq1  TGCTTGGCTGAGTGTCCCTCAGAAAGAGGTCCAGGATGTAGAGCAGAGGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTGAGTGTCCCTCAGAAAGAGGTCCAGGATGTAGAGCAGAGGA  240

seq1  GAGGGTGAACAGGCCCCAACAGCAGCTCTCAGGAATGGGCATTGGGCAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAACAGGCCCCAACAGCAGCTCTCAGGAATGGGCATTGGGCAAA  290

seq1  TGGCATTGCCCAAGGAGGGAGTAGTCCTTCCACCAGGCTAAGCTGAGCCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGCCCAAGGAGGGAGTAGTCCTTCCACCAGGCTAAGCTGAGCCA  340

seq1  GCTTTTCTACTTTGACTCAGCTGCTTCTTTCCTTCCTGCATCTCTCCCAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTACTTTGACTCAGCTGCTTCTTTCCTTCCTGCATCTCTCCCAG  390

seq1  CCTCTCACTGTCAAGGCCTTTATAGGCCTCTTCTGCTACCACTGTCACTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTGTCAAGGCCTTTATAGGCCTCTTCTGCTACCACTGTCACTT  440

seq1  GGCAAGTATCTGCCCACACCATGAGCAAGCCTGTGGCAGACAGGCCCTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTATCTGCCCACACCATGAGCAAGCCTGTGGCAGACAGGCCCTGA  490

seq1  GCCTGTCCCTCAAGGTTTCTTCGGACGAGGTATTTCTTACCAGCATTACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCCTCAAGGTTTCTTCGGACGAGGTATTTCTTACCAGCATTACA  540

seq1  TTAAAAAGAAAAGCATCCAGAGGGTCAAATGTGCACAGGAGTGATGTCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAAAGCATCCAGAGGGTCAAATGTGCACAGGAGTGATGTCAA  590

seq1  ATTTTAAGATGATAGGAGAAGGCTGACTTTTCGTTTCCATAAAAATTCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGATGATAGGAGAAGGCTGACTTTTCGTTTCCATAAAAATTCCT  640

seq1  TTGCAAATATTATGACAATTTGTTAATAAAAAATAATATTGTTTTTATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATATTATGACAATTTGTTAATAAAAAATAATATTGTTTTTATTT  690

seq1  CCTTTTCTTTCCTTCCAGATTTTTTTTTTTAGTCCACTCTGTTGCCAACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTCCTTCCAGATTTTTTTTTTTAGTCCACTCTGTTGCCAACC  740

seq1  CCCAATAAATTACAAGCTAAGCGTTTAAAGCTCACTATTCCCAGAAGCAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAATTACAAGCTAAGCGTTTAAAGCTCACTATTCCCAGAAGCAA  790

seq1  CTGTGCTTCGAAGATAGATGCTAGGAGCCAACCGGTACACAAGTCAGGGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTCGAAGATAGATGCTAGGAGCCAACCGGTACACAAGTCAGGGG  840

seq1  TTTCCAGTATCTCCTCAGTAGCATGGCTGAGCAGTTTGAAAGGGCAGGTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTATCTCCTCAGTAGCATGGCTGAGCAGTTTGAAAGGGCAGGTG  890

seq1  TAATGTCCTGAACCTTAACAGCTGGTAACGATCGATCGTGGTGGTCATTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCTGAACCTTAACAGCTGGTAACGATCGATCGTGGTGGTCATTT  940

seq1  GGTATAAGTTTCCACCCAATAGAGGAATTCTGTCTGCAGCACCCAGAAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGTTTCCACCCAATAGAGGAATTCTGTCTGCAGCACCCAGAAAG  990

seq1  CCTCAATCACTTCCAGTTATGGGAACTCACTTCTCCACAAGGCAGGATAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATCACTTCCAGTTATGGGAACTCACTTCTCCACAAGGCAGGATAC  1040

seq1  TCCCCATTGGGTGGTTTCTATCGCTATAAGATTTTTTTTTTTAAGTTTCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTGGGTGGTTTCTATCGCTATAAGATTTTTTTTTTTAAGTTTCT  1090

seq1  TTGAAAGATTGTCCTTCCCAAAGATATTTTTTAGGTGTCCAGCGTCTTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGATTGTCCTTCCCAAAGATATTTTTTAGGTGTCCAGCGTCTTGT  1140

seq1  TCTTACAATGGAGCTATCAGGAATTC  1169
      ||||||||||||||||||||||||||
seq2  TCTTACAATGGAGCTATCAGGAATTC  1166

seq1: chr3_99907753_99908816
seq2: B6Ng01-226E21.g_63_1135

seq1  GAATTCTATTCCAAGCACCCACATGGGACTTCCAACCATCTGTAACTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCCAAGCACCCACATGGGACTTCCAACCATCTGTAACTCCA  50

seq1  TTTCCAAGGTATCCAACACCCTCTTCTGGCTACCTTGGGGATTAGGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGTATCCAACACCCTCTTCTGGCTACCTTGGGGATTAGGTATT  100

seq1  CATGTAGCATACAGACATACAAGCAGGCAAAATGCTCACACTCATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCATACAGACATACAAGCAGGCAAAATGCTCACACTCATAAAAT  150

seq1  TTGAAAAAAGGAGAGGTTACACCTACTTGAGAAGCTGAGGCAGGAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAAGGAGAGGTTACACCTACTTGAGAAGCTGAGGCAGGAGGATT  200

seq1  GTAAGTTTAGGCCAGCCTGGCCAACTTAGCAAAACTGTGTATCCAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTTAGGCCAGCCTGGCCAACTTAGCAAAACTGTGTATCCAAAGAA  250

seq1  AAAGAACCCACAAAGACAGAAGATACTTGTGCTAGTTGTGATGGTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCCACAAAGACAGAAGATACTTGTGCTAGTTGTGATGGTGAGAG  300

seq1  CCTGTGAGAAGGGAAGGAAGGAGTAGGCAGCCAAAGTAGAGTTGAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGAAGGGAAGGAAGGAGTAGGCAGCCAAAGTAGAGTTGAAGAGA  350

seq1  AGCAGGTGGCGGAGGTGGCTCAGTGGTGATGGATGTGCTTGCTGCACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGGCGGAGGTGGCTCAGTGGTGATGGATGTGCTTGCTGCACAGC  400

seq1  ATACCTGGGGTCCATCATCCAGAAACCCATAAGTGAAGAGCTGGATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGGGGTCCATCATCCAGAAACCCATAAGTGAAGAGCTGGATGTGA  450

seq1  CAGTGCATTCCTGGAAACCCAGAGCTGTGGGGGCAGAGGCAGGAGGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATTCCTGGAAACCCAGAGCTGTGGGGGCAGAGGCAGGAGGGTCC  500

seq1  TGGGGCTTGCTGGATAGCAACTCTAGCCAAATTTGGTGAGCCTCCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTGCTGGATAGCAACTCTAGCCAAATTTGGTGAGCCTCCAGTTC  550

seq1  AGCAAGAGAGTCTGTCTCAAGAGTTAAAGTGGAAAAGAATTGAGAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGAGTCTGTCTCAAGAGTTAAAGTGGAAAAGAATTGAGAAAGAG  600

seq1  ACCAAACATCAACATCTGACCTCTGCATACCTGTGCAATGCACCCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACATCAACATCTGACCTCTGCATACCTGTGCAATGCACCCACACA  650

seq1  CACATACACACACACACACACACACACACACACACACAGAGAGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACACACACACACACACACACAGAGAGAGAGAGA  700

seq1  GAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAAGAATGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAAGAATGTGGA  750

seq1  CATATACATACAACATACATACATACATACATACATACATACATAG-AAA  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATATACATACAACATACATACATACATACATACATACATACATAGAAAA  800

seq1  AATGGT-AAAAAATAATTACTT-GGAAATTCATCACTGAAGTGAGTCTGT  847
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGGTAAAAAAATAATTACTTGGGAAATTCATCACTGAAGTGAGTCTGT  850

seq1  TGGGCTGGTCAACTGAATGGGCATTT-GGGAAAAAAGAAAAAGCAAGGTT  896
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGGCTGGTCAACTGAATGGGCATTTGGGGAAAAAAGAAAAAGCAAGGTT  900

seq1  GATCCGAAAGTTAGCTTGTATAACATGCTGTGGAGGTAAAGAGTTTCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATCCGAAAGTTAGCTTGTATAACATGCTGTGGAGGTAAAGAG-TTCTTT  949

seq1  AGTTCTTCTGTCTCCTC-TTCTGCCAGGCAGATATCATGATAT-GCACAT  994
      ||||| ||||||||||| ||||||||||||||||||||||||| ||||||
seq2  AGTTC-TCTGTCTCCTCTTTCTGCCAGGCAGATATCATGATATGGCACAT  998

seq1  GGCTAG--ATGCATAGGAGAGTAATGGAAA-TCCA-CTTGCTTAATATAC  1040
      ||||||   ||||||||||||||||||||| |||| || |||||  || |
seq2  GGCTAGGATTGCATAGGAGAGTAATGGAAATTCCACCTGGCTTATAATCC  1048

seq1  AT-GAACTTCTTGGT-GCAACACACA  1064
      || |||||||||||| ||||| ||||
seq2  ATGGAACTTCTTGGTGGCAAC-CACA  1073