BAC Information

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BAC

Clone NameB6Ng01-226N03
Chromosome3 (Build37)
Map Location 71,126,076 - 71,271,888
singlet/doubletdoublet
Overlap geneEG667377
Upstream geneLOC100041384, LOC625868, LOC670542, EG625901
Downstream geneLOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226N03.bB6Ng01-226N03.g
ACCGA040650GA040651
length1,166689
definitionB6Ng01-226N03.b B6Ng01-226N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,126,076 - 71,126,826)(71,271,200 - 71,271,888)
sequence
gaattctaccagaccttcaaagaagacctgatatcatttttcttcaaact
attccataaaatagaagtagaaggaacactctaacaaattctatgaagcc
acaattactctgatgcccaaaccaaacaaggatccaaccaaaaaaggaga
acttcagaccaatcttgtttgtgaatatcaatgcaaagtactcaaaaaat
tcttgcaaaccaaatccaagaacacatcaaaatgatcagtcaccattatc
aagtaggcttcatcttagggatgcaaggttggtttaatatatgaaaaccc
attaatgtaatctactatataaacaaactcaaagaagaaaaaaaatcaca
tggtcatctccttagatgcagaaaaagcatttgacaaaatataacacccc
ttcatgttacaagtattggagagatcaggaattcaaatcaaacaacccaa
tccaaaaatgggatatagaactgaactgagaattcacaactgaggactct
taaatggctgagaaacagctaaagaaatgttcagagtacagagtgatcag
agaaatgcaaatcaaaacgaccctgagattgcattttataacaatcagaa
tggctaagatcaaaacctcaagagacaacacatgttggagaggttgtgga
tgaagaggaacactcctccattgctgattgtaaactggtacaaccactcg
gtaattcaatctggaagttcctcagaatattggaaatagatctacttgaa
gacccagctataccactcttggggaatatacccaaaaaatgctccaccat
gtcacaggggcaactgttctacattgttcatagcgaccttatttgtgata
gccacaagatggaaacaacctagatgtcccactacagaagaatggataca
aaaaatatggtgaagattgaaatatgttgtggtataatggaaactcagac
tttaagacaaacttcacatctgtgtatgtgcaacagtgcatgggtgtagg
cttagttttttccaaaacgtattttatgtagggttcataatgcttcaacc
tcccttctagcccatcttatcagagaggagaggaaaagaaaggttatagg
aattggtgttgtttacctgtttaccaagtagttccttggagcattctact
ctttcattgtcaggat

gaattcagcttcaaaattaaagacaatttttttgatgagaattagatatg
tgtgtacatatgtgtttgtacgttgttttgtacacatgtatgcatattgt
atatttatccccatgaacactacagacataaatggcaaaatagaaacaaa
aaagtgagagtttacctgatcatcatttcttctagtaaataaatacaaag
ggtaagcttcaaattgtttggtgattaaagaaataggaagaaaatgataa
ataatttagcaatgatggcaagccatggccacattctatggaaatattca
ctaacattagacatgtcctgctttagagtaattagaaggtattattttta
aattcagccctacaagtatcattaaagaacatttttttatgtattaaaat
gctttatatgcataagtatctataattttttaaataattattttgagtgt
aataaaagaatagaagttatttatacctttcatcattatggtttccttta
aattataaaatataaaatagtataaataatgcataaagtcatttttatcg
cattattaatgactagtgagtgttctttctattctagacaaaaaagtatg
agacatatagtgcttggattttattttccaagcacaatatgtggatttta
tggattttgcatatatatatgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71126076_71126826
seq2: B6Ng01-226N03.b_462_1212

seq1  TTGGAGAGATCAGGAATTCAAATCAAACAACCCAATCCAAAAATGGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGATCAGGAATTCAAATCAAACAACCCAATCCAAAAATGGGATA  50

seq1  TAGAACTGAACTGAGAATTCACAACTGAGGACTCTTAAATGGCTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGAACTGAGAATTCACAACTGAGGACTCTTAAATGGCTGAGAAA  100

seq1  CAGCTAAAGAAATGTTCAGAGTACAGAGTGATCAGAGAAATGCAAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAGAAATGTTCAGAGTACAGAGTGATCAGAGAAATGCAAATCAA  150

seq1  AACGACCCTGAGATTGCATTTTATAACAATCAGAATGGCTAAGATCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACCCTGAGATTGCATTTTATAACAATCAGAATGGCTAAGATCAAAA  200

seq1  CCTCAAGAGACAACACATGTTGGAGAGGTTGTGGATGAAGAGGAACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAGACAACACATGTTGGAGAGGTTGTGGATGAAGAGGAACACTC  250

seq1  CTCCATTGCTGATTGTAAACTGGTACAACCACTCGGTAATTCAATCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGCTGATTGTAAACTGGTACAACCACTCGGTAATTCAATCTGGA  300

seq1  AGTTCCTCAGAATATTGGAAATAGATCTACTTGAAGACCCAGCTATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCAGAATATTGGAAATAGATCTACTTGAAGACCCAGCTATACCA  350

seq1  CTCTTGGGGAATATACCCAAAAAATGCTCCACCATGTCACAGGGGCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGGAATATACCCAAAAAATGCTCCACCATGTCACAGGGGCAACT  400

seq1  GTTCTACATTGTTCATAGCGACCTTATTTGTGATAGCCACAAGATGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACATTGTTCATAGCGACCTTATTTGTGATAGCCACAAGATGGAAA  450

seq1  CAACCTAGATGTCCCACTACAGAAGAATGGATACAAAAAATATGGTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGATGTCCCACTACAGAAGAATGGATACAAAAAATATGGTGAAG  500

seq1  ATTGAAATATGTTGTGGTATAATGGAAACTCAGACTTTAAGACAAACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATATGTTGTGGTATAATGGAAACTCAGACTTTAAGACAAACTTC  550

seq1  ACATCTGTGTATGTGCAACAGTGCATGGGTGTAGGCTTAGTTTTTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGTATGTGCAACAGTGCATGGGTGTAGGCTTAGTTTTTTCCAA  600

seq1  AACGTATTTTATGTAGGGTTCATAAATGCTTCAACCTCCCTTCTAGCCCA  650
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACGTATTTTATGTAGGGTTCAT-AATGCTTCAACCTCCCTTCTAGCCCA  649

seq1  TC-TATCAGAGA-GAGAGGAAAAAGAAAGTTAATAGGAAATGGTGTTGTT  698
      || ||||||||| |||||| ||||||||| | ||||||| ||||||||||
seq2  TCTTATCAGAGAGGAGAGG-AAAAGAAAGGTTATAGGAATTGGTGTTGTT  698

seq1  TAACTGTTTA-CAAGTAGTTCTTTGGGAGCAATTCTACTC-TTCATTGTC  746
      || ||||||| |||||||||| || ||||| ||||||||| |||||||||
seq2  TACCTGTTTACCAAGTAGTTCCTT-GGAGC-ATTCTACTCTTTCATTGTC  746

seq1  AGGAT  751
      |||||
seq2  AGGAT  751


seq1: chr3_71271200_71271888
seq2: B6Ng01-226N03.g_67_755 (reverse)

seq1  CACACACACACACACACACATATATATATGCAAAATCCATAAAATCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATATATATATGCAAAATCCATAAAATCCACA  50

seq1  TATTGTGCTTGGAAAATAAAATCCAAGCACTATATGTCTCATACTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCTTGGAAAATAAAATCCAAGCACTATATGTCTCATACTTTTTT  100

seq1  GTCTAGAATAGAAAGAACACTCACTAGTCATTAATAATGCGATAAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAATAGAAAGAACACTCACTAGTCATTAATAATGCGATAAAAATG  150

seq1  ACTTTATGCATTATTTATACTATTTTATATTTTATAATTTAAAGGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGCATTATTTATACTATTTTATATTTTATAATTTAAAGGAAACC  200

seq1  ATAATGATGAAAGGTATAAATAACTTCTATTCTTTTATTACACTCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATGAAAGGTATAAATAACTTCTATTCTTTTATTACACTCAAAAT  250

seq1  AATTATTTAAAAAATTATAGATACTTATGCATATAAAGCATTTTAATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTAAAAAATTATAGATACTTATGCATATAAAGCATTTTAATACA  300

seq1  TAAAAAAATGTTCTTTAATGATACTTGTAGGGCTGAATTTAAAAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATGTTCTTTAATGATACTTGTAGGGCTGAATTTAAAAATAATA  350

seq1  CCTTCTAATTACTCTAAAGCAGGACATGTCTAATGTTAGTGAATATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAATTACTCTAAAGCAGGACATGTCTAATGTTAGTGAATATTTCC  400

seq1  ATAGAATGTGGCCATGGCTTGCCATCATTGCTAAATTATTTATCATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGTGGCCATGGCTTGCCATCATTGCTAAATTATTTATCATTTTC  450

seq1  TTCCTATTTCTTTAATCACCAAACAATTTGAAGCTTACCCTTTGTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTTCTTTAATCACCAAACAATTTGAAGCTTACCCTTTGTATTTA  500

seq1  TTTACTAGAAGAAATGATGATCAGGTAAACTCTCACTTTTTTGTTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGAAGAAATGATGATCAGGTAAACTCTCACTTTTTTGTTTCTAT  550

seq1  TTTGCCATTTATGTCTGTAGTGTTCATGGGGATAAATATACAATATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTTATGTCTGTAGTGTTCATGGGGATAAATATACAATATGCAT  600

seq1  ACATGTGTACAAAACAACGTACAAACACATATGTACACACATATCTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTACAAAACAACGTACAAACACATATGTACACACATATCTAATT  650

seq1  CTCATCAAAAAAATTGTCTTTAATTTTGAAGCTGAATTC  689
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAAAAAATTGTCTTTAATTTTGAAGCTGAATTC  689


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