BAC Information

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BAC

Clone NameB6Ng01-226N19
Chromosome3 (Build37)
Map Location 142,032,503 - 142,160,386
singlet/doubletdoublet
Overlap genePdlim5, Gbp5
Upstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3
Downstream geneGbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226N19.bB6Ng01-226N19.g
ACCGA040682GA040683
length1,1571,171
definitionB6Ng01-226N19.b B6Ng01-226N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,032,503 - 142,033,663)(142,159,204 - 142,160,386)
sequence
gaattccagaactcagtgatgaatacagaaatgtggcatgtgctaagggc
aatcttgttctctggggctttcataagaaataaaaaaaaggacaaaaaaa
aactcctaagattacaaatatgttaggttaaatcaaccaatctatgttgt
ttacacacatcagaatatcatgttatatcccataagtatacataattata
atctatcaaatcaaggtagataattaaaacaaaatattttaaagcaggtt
gcatatatctctcctaacaaacgtgatagtcttctgattctggtatttat
agatgataaagatgggaattcatctcactaatgttttcagtgaagaacag
ctgatactccctagtcatagggttataaaccttggttgttactgaaaaat
attccaagccatgaaagaacagcaacataacacaccagtggtatattcaa
caagttaactggcactgaagatacattcctaagagattatttaatatcta
atttgttcttggtccaaaagaagaagaggaaactgttccaggatttaact
aggaacaagaaataggaaacaattctgcaatgggataatgtcaatgctct
atcagctaaggataatcaatgtcaaagttaagaagtgcctgaggggagtg
atttaatcaaacaccagagtgaacacctcagaaagttggaaaagtctact
ttcctgtctcaagcaccgtcatggtttggatataatatgacccttaactg
ttcatgtgtttgaaacttggtccccagctggtggcactattttggaaagt
tatggaaacagtaggaggtgcacttagaaggaggaggtgaacctcggaca
gttataccagtcctctagatccaattcctcctctgcttgctgtctaccat
gaagaacgccccctactctctcgctccaccaggacattttctgtgtgaga
ggccaagcaaccatgaaccaaaccctttaaaatcatgagccaaaacaagg
tttccaccttttccattgtttatctcagagtttgttccagtaagtaaata
caataccaacatcagcacaaatacattgccagctaaacgtatgatctgca
gtcatccattccttgctttcctctttttttttttaattttggttgtttgg
gtttttg
gaattcacttcccgacaatgggagcgctggttagagccccagtctcagac
cttttactgcgcagctcatgctctgctatattgttcatgcaaacagtatg
gttgcctgctattctggaggtgattctgttctaaacagcaactagggatg
ccaagaagttagaacaagcggagataaacagttggaagtcatttctacct
ttcagtttaatctcttcacactctgccctctcattaacaggaaacaataa
cggcactgaataaacactcggactgctggacaaggaattctgcttctctg
agaacactgctgtttaatctctaatggggctgagccagcatccaggctag
gatgcatcccatcctggataaagtagtctaaaaaataattcctaacagtc
tcttcccacccctgctccaggtcttaccttaagaaaaactgaagagcggg
agcaggggccagtaagaacactgcttcaaacgggactctgcaagaggaca
aactcgttgcacccttatttatctgtgcttggttctgagaaataacggcc
agccctgggaatttcctttcctctcccagagagctgggagagaacttgat
tatgaaacgcaagaacaggaatctgcaaaagggttctctaaactgaaatt
gaaactacacaagttcagactgtatagttgaaggggattttcaaaagcag
aaggcttgaatgtcactgaactaatttcccagaagttgcccacaatctga
aagagaacgttgacatcgtttgtcattgtttcaagcgctgtttattttat
tcctttgaacgagggtgataatttttatggttttgaatcacaattgtttt
gaagggaaacctcacgtactatttgaagactcatttcttacaattgtctc
tgcatccacttaggataaaaagttgttttcattggtagtaggttaaacaa
ggaactcagggtgtcatgttgtggacttcttgattcccatatataaagaa
ataaagacagattaggaaactgagatactttttttgagttggagagagga
aaaaattagcagagcagacaatcgtacagcaaccagaaaggaagatgcca
agaaagaaggctatatcagctgctggtagagactgcactagcagctgaac
tcagttcacgaaaggcctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142032503_142033663
seq2: B6Ng01-226N19.b_48_1203

seq1  GAATTCCAGAACTCAGTGATGAATACAGAAATGTGGCATGTGCTAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACTCAGTGATGAATACAGAAATGTGGCATGTGCTAAGGGC  50

seq1  AATCTTGTTCTCTGGGGCTTTCATAAGAAATAAAAAAAAGGACAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTTCTCTGGGGCTTTCATAAGAAATAAAAAAAAGGACAAAAAAA  100

seq1  AACTCCTAAGATTACAAATATGTTAGGTTAAATCAACCAATCTATGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAAGATTACAAATATGTTAGGTTAAATCAACCAATCTATGTTGT  150

seq1  TTACACACATCAGAATATCATGTTATATCCCATAAGTATACATAATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACATCAGAATATCATGTTATATCCCATAAGTATACATAATTATA  200

seq1  ATCTATCAAATCAAGGTAGATAATTAAAACAAAATATTTTAAAGCAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCAAATCAAGGTAGATAATTAAAACAAAATATTTTAAAGCAGGTT  250

seq1  GCATATATCTCTCCTAACAAACGTGATAGTCTTCTGATTCTGGTATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATCTCTCCTAACAAACGTGATAGTCTTCTGATTCTGGTATTTAT  300

seq1  AGATGATAAAGATGGGAATTCATCTCACTAATGTTTTCAGTGAAGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAAAGATGGGAATTCATCTCACTAATGTTTTCAGTGAAGAACAG  350

seq1  CTGATACTCCCTAGTCATAGGGTTATAAACCTTGGTTGTTACTGAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTCCCTAGTCATAGGGTTATAAACCTTGGTTGTTACTGAAAAAT  400

seq1  ATTCCAAGCCATGAAAGAACAGCAACATAACACACCAGTGGTATATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGCCATGAAAGAACAGCAACATAACACACCAGTGGTATATTCAA  450

seq1  CAAGTTAACTGGCACTGAAGATACATTCCTAAGAGATTATTTAATATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAACTGGCACTGAAGATACATTCCTAAGAGATTATTTAATATCTA  500

seq1  ATTTGTTCTTGGTCCAAAAGAAGAAGAGGAAACTGTTCCAGGATTTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCTTGGTCCAAAAGAAGAAGAGGAAACTGTTCCAGGATTTAACT  550

seq1  AGGAACAAGAAATAGGAAACAATTCTGCAATGGGATAATGTCAATGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAGAAATAGGAAACAATTCTGCAATGGGATAATGTCAATGCTCT  600

seq1  ATCAGCTAAGGATAATCAATGTCAAAGTTAAGAAGTGCCTGAGGGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAAGGATAATCAATGTCAAAGTTAAGAAGTGCCTGAGGGGAGTG  650

seq1  ATTTAATCAAACACCAGAGTGAACACCTCAGAAAGTTGGAAAAGTCTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCAAACACCAGAGTGAACACCTCAGAAAGTTGGAAAAGTCTACT  700

seq1  TTCCTGTCTCAAGCACCGTCATGGTTTGGATATAATATGACCCTTAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTCAAGCACCGTCATGGTTTGGATATAATATGACCCTTAACTG  750

seq1  TTCATGTGTTTGAAACTTGGTCCCCAGCTGGTGGCACTATTTTGGAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTTTGAAACTTGGTCCCCAGCTGGTGGCACTATTTTGGAAAGT  800

seq1  TATGGAAACAGTAGGAGGTGCACTTAGAAGGAGGAGGTGAACCTCGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAACAGTAGGAGGTGCACTTAGAAGGAGGAGGTGAACCTCGGACA  850

seq1  GTTATACCAGTCCTCTAGATCCAATTCCTCCTCTGCTTGCTGTCTACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACCAGTCCTCTAGATCCAATTCCTCCTCTGCTTGCTGTCTACCAT  900

seq1  GAAGAACGCCCCCTACTCTCTCGCTCCACCAGGACATTTTCTGTGTGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACGCCCCCTACTCTCTCGCTCCACCAGGACATTTTCTGTGTGAGA  950

seq1  GGCCAAGCAACCATGAACCAAACCCTTTAAAATCATGAGCCAAAACAAAG  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCCAAGCAACCATGAACCAAACCCTTTAAAATCATGAGCCAAAAC-AAG  999

seq1  GTTTCCACC-TTTCCATTGTTTATCTCAGGAGTTTGGTTCCAGTAAGTAA  1049
      ||||||||| |||||||||||||||||| |||||| ||||||||||||||
seq2  GTTTCCACCTTTTCCATTGTTTATCTCA-GAGTTT-GTTCCAGTAAGTAA  1047

seq1  ATACAATAACCAACATCAGCACAAATACATTGCCAGCTAAACGTATGATC  1099
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAT-ACCAACATCAGCACAAATACATTGCCAGCTAAACGTATGATC  1096

seq1  TGGCAGTCATTCAATCCCTTGCTTT-CTCTTTTTTTTTTTTATTTTTTGT  1148
      | ||||||| || || ||||||||| |||||||||||||| |  ||||| 
seq2  T-GCAGTCA-TCCATTCCTTGCTTTCCTCTTTTTTTTTTTAA--TTTTGG  1142

seq1  TTGTTTGGTTTTT-  1161
      |||||||| |||| 
seq2  TTGTTTGGGTTTTT  1156

seq1: chr3_142159204_142160386
seq2: B6Ng01-226N19.g_67_1237 (reverse)

seq1  TACA-GCCTTTCTGTG-ACTGAG-TCAGCTTGCTGGTGCAGTCTCTAACC  47
      |||| ||||||| ||| |||||| ||||| |||| ||||||||||||  |
seq2  TACAGGCCTTTC-GTGAACTGAGTTCAGC-TGCTAGTGCAGTCTCTA--C  46

seq1  CAGCAAGCGTGAT-TAGCTTTCTTTTCCTTTGCAATCTCTCCTTTCTGGT  96
      |||| ||| |||| |||| ||||||  ||| || |||| |||||||||| 
seq2  CAGC-AGC-TGATATAGCCTTCTTT--CTTGGC-ATCT-TCCTTTCTGG-  89

seq1  TTCCTGTACGGTTTGTCTGCTCTGCTAATTTTTTCCTCTCTCCAACTCCA  146
      || |||||| | |||||||||||||||||||||||||||||||||||| |
seq2  TTGCTGTAC-GATTGTCTGCTCTGCTAATTTTTTCCTCTCTCCAACTCAA  138

seq1  AAAAAGTTATCCTCAGTTTTCCTAATTCTGTTCTTTATTTCTTTTATATA  196
      |||||| ||| ||||| |||||||| |||| |||||||||| ||||||||
seq2  AAAAAG-TAT-CTCAG-TTTCCTAA-TCTG-TCTTTATTTC-TTTATATA  182

seq1  TGGGATTCAAG-AGTCCACAACATGACACCCTGAGTTCCTTGTTTAACCT  245
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCAAGAAGTCCACAACATGACACCCTGAGTTCCTTGTTTAACCT  232

seq1  ACTACCAATGAAAACAAC-TTTTATCCTAAGTGGATGCAGAGACAATTGT  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTACCAATGAAAACAACTTTTTATCCTAAGTGGATGCAGAGACAATTGT  282

seq1  AAGAAATGAGTCTTCAAATAGTACGTGAGGTTTCCCTTCAAAACAATTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAGTCTTCAAATAGTACGTGAGGTTTCCCTTCAAAACAATTGT  332

seq1  GATTCAAAACCATAAAAATTATCACCCTCGTTCAAAGGAATAAAATAAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAACCATAAAAATTATCACCCTCGTTCAAAGGAATAAAATAAAC  382

seq1  AGCGCTTGAAACAATGACAAACGATGTCAACGTTCTCTTTCAGATTGTGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTGAAACAATGACAAACGATGTCAACGTTCTCTTTCAGATTGTGG  432

seq1  GCAACTTCTGGGAAATTAGTTCAGTGACATTCAAGCCTTCTGCTTTTGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCTGGGAAATTAGTTCAGTGACATTCAAGCCTTCTGCTTTTGAA  482

seq1  AATCCCCTTCAACTATACAGTCTGAACTTGTGTAGTTTCAATTTCAGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTTCAACTATACAGTCTGAACTTGTGTAGTTTCAATTTCAGTTT  532

seq1  AGAGAACCCTTTTGCAGATTCCTGTTCTTGCGTTTCATAATCAAGTTCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCCTTTTGCAGATTCCTGTTCTTGCGTTTCATAATCAAGTTCTC  582

seq1  TCCCAGCTCTCTGGGAGAGGAAAGGAAATTCCCAGGGCTGGCCGTTATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCTCTGGGAGAGGAAAGGAAATTCCCAGGGCTGGCCGTTATTT  632

seq1  CTCAGAACCAAGCACAGATAAATAAGGGTGCAACGAGTTTGTCCTCTTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACCAAGCACAGATAAATAAGGGTGCAACGAGTTTGTCCTCTTGC  682

seq1  AGAGTCCCGTTTGAAGCAGTGTTCTTACTGGCCCCTGCTCCCGCTCTTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCGTTTGAAGCAGTGTTCTTACTGGCCCCTGCTCCCGCTCTTCA  732

seq1  GTTTTTCTTAAGGTAAGACCTGGAGCAGGGGTGGGAAGAGACTGTTAGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTAAGGTAAGACCTGGAGCAGGGGTGGGAAGAGACTGTTAGGA  782

seq1  ATTATTTTTTAGACTACTTTATCCAGGATGGGATGCATCCTAGCCTGGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTAGACTACTTTATCCAGGATGGGATGCATCCTAGCCTGGAT  832

seq1  GCTGGCTCAGCCCCATTAGAGATTAAACAGCAGTGTTCTCAGAGAAGCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCAGCCCCATTAGAGATTAAACAGCAGTGTTCTCAGAGAAGCAG  882

seq1  AATTCCTTGTCCAGCAGTCCGAGTGTTTATTCAGTGCCGTTATTGTTTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTGTCCAGCAGTCCGAGTGTTTATTCAGTGCCGTTATTGTTTCC  932

seq1  TGTTAATGAGAGGGCAGAGTGTGAAGAGATTAAACTGAAAGGTAGAAATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGAGAGGGCAGAGTGTGAAGAGATTAAACTGAAAGGTAGAAATG  982

seq1  ACTTCCAACTGTTTATCTCCGCTTGTTCTAACTTCTTGGCATCCCTAGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAACTGTTTATCTCCGCTTGTTCTAACTTCTTGGCATCCCTAGTT  1032

seq1  GCTGTTTAGAACAGAATCACCTCCAGAATAGCAGGCAACCATACTGTTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTAGAACAGAATCACCTCCAGAATAGCAGGCAACCATACTGTTTG  1082

seq1  CATGAACAATATAGCAGAGCATGAGCTGCGCAGTAAAAGGTCTGAGACTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAATATAGCAGAGCATGAGCTGCGCAGTAAAAGGTCTGAGACTG  1132

seq1  GGGCTCTAACCAGCGCTCCCATTGTCGGGAAGTGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTAACCAGCGCTCCCATTGTCGGGAAGTGAATTC  1171