BAC Information

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BAC

Clone NameB6Ng01-227C01
Chromosome1 (Build37)3 (Build37)
Map Location 131,385,821 - 131,386,033116,072,213 - 116,072,750
singlet/doubletsingletsinglet
Overlap geneThsd7b
Upstream geneLOC620659, Cxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227C01.bB6Ng01-227C01.g
ACCGA040879GA040880
length683532
definitionB6Ng01-227C01.b B6Ng01-227C01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,385,821 - 131,386,033)(116,072,213 - 116,072,750)
sequence
gaattccaacagagtacaaaggagaagcaagctgagcaccagtgtttatc
actgatcagtcctgactgtggacactatccgaccaactgccttgcacatt
tgctgtcctgacatcacacgatggactgcaccttcaagctgtaagccaca
acagacccttcctcccttaagatgttcttgtcagatgttcaatcataccg
tgaggaaaagtgacaagagtccagtgcctacttacagagctctatttcaa
tagcatttcgttttggcccaataagtcaggacaactgtttttacaaagat
gtttttatctactggaaagatttgccctaagttccatcagttaccatagc
ctcgttggggtggtcatgtctgttctatgcagtcctacttggacattcta
aaacagtgacctgtaaagctagccacagtaacaatacttttaaaagcatt
tttatttattctttgaaaagttcaatctttaaaaaaggggggggggatgg
ctcagcggttaagaacactgactgctcttctaaaggtcccgagttcaaat
cccagcaaccacatggtggctcacaaccatccgtaacgagatctgatgcc
ctcttctggtgtgtctgaagacagctacagtgtacttacatataataaat
aaataaatctttaaaaaaaagaaaaaagaaaaa

attgttgaatggcacacgcatgcaggcttagcctttaactcctgagccat
ctctccagccctaaccctaactctaaccctaaccatacaaacatgcatgg
tgttttaaattacaagatttcaaactgttaagaggaaccaaggtgatgcg
gaattggagagaagcgaacatcctactctgttctacttctgtacaggtgt
gaacaacattggtgttaaacagaaagtaactaaatcagttcatgaaacgc
ttaatatgtcttcctccccccaaaaaatagttcatattgaggcccaaagt
tgtgctaacaagtcttatatttcctaaaaatatcttctgaaactattatc
aaagcacctaccacatattctgatttatctttttggcttctaaaaggaaa
tggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgcggggggtagtaggatacataattcgagtggaagaattttcccaa
actttgatcaccacttgataaaaatcattgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131385821_131386033
seq2: B6Ng01-227C01.b_525_728 (reverse)

seq1  TTTTTCTTTTTTCTTTGATTTTTTTAAAAGATTTATTTA-TTATTATATC  49
      |||||||||||||     ||||||| ||||||||||||| ||||||||| 
seq2  TTTTTCTTTTTTC-----TTTTTTTTAAAGATTTATTTATTTATTATATG  45

seq1  TAAGTACACTGTTGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCT  99
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCT  95

seq1  CATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGTGATTTGAACTCAG  149
      | |||| ||||||||||||||||||||||||||||| ||||||||||| |
seq2  CGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGG  145

seq1  GACCTTTTGAAAGAGCAGTCAATGCTCTTAACTGCTGAGCCATCTCGCTA  199
      ||||||| | ||||||||||| || ||||||| ||||||||||| | |  
seq2  GACCTTTAG-AAGAGCAGTCAGTGTTCTTAACCGCTGAGCCATCCCCC--  192

seq1  GCCCCCTTTCTTTA  213
       |||||||| ||||
seq2  -CCCCCTTT-TTTA  204


seq1: chr3_116072213_116072750
seq2: B6Ng01-227C01.g_65_602

seq1  GAATTCATTGTTGAATGGCACACGCATGCAGGCTTAGCCTTTAACTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTGAATGGCACACGCATGCAGGCTTAGCCTTTAACTCCTG  50

seq1  AGCCATCTCTCCAGCCCTAACCCTAACTCTAACCCTAACCATACAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCTCCAGCCCTAACCCTAACTCTAACCCTAACCATACAAACAT  100

seq1  GCATGGTGTTTTAAATTACAAGATTTCAAACTGTTAAGAGGAACCAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGTTTTAAATTACAAGATTTCAAACTGTTAAGAGGAACCAAGGT  150

seq1  GATGCGGAATTGGAGAGAAGCGAACATCCTACTCTGTTCTACTTCTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGGAATTGGAGAGAAGCGAACATCCTACTCTGTTCTACTTCTGTAC  200

seq1  AGGTGTGAACAACATTGGTGTTAAACAGAAAGTAACTAAATCAGTTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAACAACATTGGTGTTAAACAGAAAGTAACTAAATCAGTTCATG  250

seq1  AAACGCTTAATATGTCTTCCTCCCCCCAAAAAATAGTTCATATTGAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTTAATATGTCTTCCTCCCCCCAAAAAATAGTTCATATTGAGGCC  300

seq1  CAAAGTTGTGCTAACAAGTCTTATATTTCCTAAAAATATCTTCTGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGTGCTAACAAGTCTTATATTTCCTAAAAATATCTTCTGAAACT  350

seq1  ATTATCAAAGCACCTACCACATATTCTGATTTATCTTTTTGGCTTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAAGCACCTACCACATATTCTGATTTATCTTTTTGGCTTCTAAA  400

seq1  AGGAAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  450

seq1  GTGTACATATACACTAGCTATTAGCATACATAAGTCAATGGGAAGAATTT  500
      ||||   | | |    | || ||| |||||||| || |  ||||||||||
seq2  GTGTGTGTGTGCGGGGGGTAGTAGGATACATAATTCGAGTGGAAGAATTT  500

seq1  TCCCAAACTTTGATCAGCACTTGACAAAAATCATTGAC  538
      |||||||||||||||| ||||||| |||||||||||||
seq2  TCCCAAACTTTGATCACCACTTGATAAAAATCATTGAC  538


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