BAC Information

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BAC

Clone NameB6Ng01-227D21
Chromosome3 (Build37)
Map Location 37,360,001 - 37,501,811
singlet/doubletdoublet
Overlap geneSpata5, LOC665778
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneSpry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227D21.bB6Ng01-227D21.g
ACCGA040964GA040965
length7111,173
definitionB6Ng01-227D21.b B6Ng01-227D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,360,001 - 37,360,711)(37,500,635 - 37,501,811)
sequence
gaattctcctcctaaaaatcaaagttccttttgaaaacacataagtaccc
ccaagatttcccaagattttttttttttaattaagtgaagaaaactgttg
gtatagatccaagaagccaaaagtagggaattttttaaaaaatatatttt
atttcctaggtaaagcatttttgtatctaagtacatattcttacaaaatg
ctattgaaaatattttgtcagggtcctgtcagcaaaatctagctagcata
tgcaatagtgtctgggtttagtggctgtttatgggatggatccccgggtg
gggcagtctctggatggtcctacctactgtctcagctccaaactttgact
ctgtaactcattccatgggtattttgttccccattctaaggaacgaatta
tccacactttggccttccttcttcttgagtttcatgtcctttgcagattg
tatcttgggtattctaagtttcttggctaatatccctgatatagctgtct
cttgtaagactttaccagtgcctggcaaatacagaagtggatgctcacca
tcatctattggatggaacacaaggcccccaatggaggagctagagaaagt
acccaaggagctgaaggggtctgcagccctataggaggaacaacaatatg
aactaactagtattctcagagctcatgtttctagctgcatatgtagcaga
agatggcctag
gaattctcctttaagtttaaattcttccaccttggagatggactcatcag
gacagggagcagagtattttgcacattctcacagagccccctatgtattt
cttctccatcactattggcacctggctcgcctattgcttccatacagacc
agcaggtgagaaacacttcccatgtactgatgcacaacttgtatcgtcca
tgacagaaagctaacagaaaaacctgagagtctgccctgtgagggaaccc
aggtgtcctcagaagacttagtcaagaaaggagccattgcgggtagcggg
tagcgggtagcgggtagcgggtagcgggtagcggggagattttgtctctt
ctgggcagtcttcagctccttgctgtgtggaagctggtagtcatggcagg
cacacagtgtgacttgatgtcataagggaattagtcacaggccattagga
gcacatagagaccgtcccattgtttcatgactcagaggggtcatggtggg
ttataaataataccattactccattttcttgctgttggaaatgtagaatt
agccgaaagtggaacatttgacaagaaggaacaggaagggatacttcctg
ggcctgagaaggaaaagatggtgcctggacaccagatgtgtgcaggcgct
ccaacatgacagtatgccagcacagaaggactccgccgcctgtagcaacc
gcgatgaagctctatgacgttaccacacacgccaatgtgagtttctcata
ctgttatttttagccaaactgtttatatacacaagaacctgtccacacag
atgtcagtgtctgactcagtaacgtccccaagtacagaagtgcttcacgg
tttttcagtcttatttcaaaacatgaacaaggttggagctgcacttgtgg
cctatgtgtgaggtcccaggttcactcgtcagaagctaaataaaaagcac
aaaataacttaacatctagttatgaaaaaaaagtcagactttggtttagt
actacaaaaagtaagtgacaaagtccttaacagaagtgttgagagttgac
ttgggaacaaatgggatcgtaccccaccaccattagaaagattctgacgg
agaaaagaactgatgttagttaaatatgagctaacagcacaagacctact
cccttggtccacgtgaccgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37360001_37360711
seq2: B6Ng01-227D21.b_46_756

seq1  GAATTCTCCTCCTAAAAATCAAAGTTCCTTTTGAAAACACATAAGTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCTAAAAATCAAAGTTCCTTTTGAAAACACATAAGTACCC  50

seq1  CCAAGATTTCCCAAGATTTTTTTTTTTTAATTAAGTGAAGAAAACTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTTCCCAAGATTTTTTTTTTTTAATTAAGTGAAGAAAACTGTTG  100

seq1  GTATAGATCCAAGAAGCCAAAAGTAGGGAATTTTTTAAAAAATATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATCCAAGAAGCCAAAAGTAGGGAATTTTTTAAAAAATATATTTT  150

seq1  ATTTCCTAGGTAAAGCATTTTTGTATCTAAGTACATATTCTTACAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGGTAAAGCATTTTTGTATCTAAGTACATATTCTTACAAAATG  200

seq1  CTATTGAAAATATTTTGTCAGGGTCCTGTCAGCAAAATCTAGCTAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAAATATTTTGTCAGGGTCCTGTCAGCAAAATCTAGCTAGCATA  250

seq1  TGCAATAGTGTCTGGGTTTAGTGGCTGTTTATGGGATGGATCCCCGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGTGTCTGGGTTTAGTGGCTGTTTATGGGATGGATCCCCGGGTG  300

seq1  GGGCAGTCTCTGGATGGTCCTACCTACTGTCTCAGCTCCAAACTTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCTCTGGATGGTCCTACCTACTGTCTCAGCTCCAAACTTTGACT  350

seq1  CTGTAACTCATTCCATGGGTATTTTGTTCCCCATTCTAAGGAACGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCATTCCATGGGTATTTTGTTCCCCATTCTAAGGAACGAATTA  400

seq1  TCCACACTTTGGCCTTCCTTCTTCTTGAGTTTCATGTCCTTTGCAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTTTGGCCTTCCTTCTTCTTGAGTTTCATGTCCTTTGCAGATTG  450

seq1  TATCTTGGGTATTCTAAGTTTCTTGGCTAATATCCCTGATATAGCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGGTATTCTAAGTTTCTTGGCTAATATCCCTGATATAGCTGTCT  500

seq1  CTTGTAAGACTTTACCAGTGCCTGGCAAATACAGAAGTGGATGCTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGACTTTACCAGTGCCTGGCAAATACAGAAGTGGATGCTCACCA  550

seq1  TCATCTATTGGATGGAACACAAGGCCCCCAATGGAGGAGCTAGAGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTGGATGGAACACAAGGCCCCCAATGGAGGAGCTAGAGAAAGT  600

seq1  ACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGGAGGAACAACAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGGAGGAACAACAATATG  650

seq1  AACTAACTAGTATTCTCAGAGCTCATGTTTCTAGCTGCATATGTAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAGTATTCTCAGAGCTCATGTTTCTAGCTGCATATGTAGCAGA  700

seq1  AGATGGCCTAG  711
      |||||||||||
seq2  AGATGGCCTAG  711

seq1: chr3_37500635_37501811
seq2: B6Ng01-227D21.g_67_1239 (reverse)

seq1  CCCAC-GTCA-GTGGGCCAAGGGGAGTAGGTCTTTGTTGCTGGTTATGCT  48
      ||||| |||| |||| |||| |||||||||||||   |||| |||| || 
seq2  CCCACGGTCACGTGGACCAA-GGGAGTAGGTCTT--GTGCT-GTTA-GC-  44

seq1  TCATTATTTAACTACATTCATTTCTTTTTCTCCCTCAG-ATC-TTCTAAT  96
      ||| ||||||||||   ||| ||| |||||||| |||| ||| |||||||
seq2  TCA-TATTTAACTAACATCAGTTC-TTTTCTCCGTCAGAATCTTTCTAAT  92

seq1  GGTGGTGGGGTACGATCCCATTTGTTCCCAAGTCAACTCTCAACACTTCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGGGTACGATCCCATTTGTTCCCAAGTCAACTCTCAACACTTCT  142

seq1  G-TAAGGACTTTGTCACTTACTTTTTTGTAGTACTAAACAAAGTTCTGAC  195
      | ||||||||||||||||||| ||||||||||||||||| ||  ||||||
seq2  GTTAAGGACTTTGTCACTTAC-TTTTTGTAGTACTAAACCAAAGTCTGAC  191

seq1  TTTTTTTTCATAACTAGATGTTTAAGTTA-TTTGTGCTTTTTATTTAGCT  244
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  TTTTTTTTCATAACTAGATG-TTAAGTTATTTTGTGCTTTTTATTTAGCT  240

seq1  TCTGACGAGTGAACCTGGGACCTCACACATAGGCCACAAGTGCAGCTCCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGAGTGAACCTGGGACCTCACACATAGGCCACAAGTGCAGCTCCA  290

seq1  ACCTTGTTCATGTTTTGAAATAAGACTGAAAAACCGTGAAGCACTTCTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTCATGTTTTGAAATAAGACTGAAAAACCGTGAAGCACTTCTGT  340

seq1  ACTTGGGGACGTTACTGAGTCAGACACTGACATCTGTGTGGACAGGTTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGACGTTACTGAGTCAGACACTGACATCTGTGTGGACAGGTTCT  390

seq1  TGTGTATATAAACAGTTTGGCTAAAAATAACAGTATGAGAAACTCACATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATAAACAGTTTGGCTAAAAATAACAGTATGAGAAACTCACATT  440

seq1  GGCGTGTGTGGTAACGTCATAGAGCTTCATCGCGGTTGCTACAGGCGGCG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGTGGTAACGTCATAGAGCTTCATCGCGGTTGCTACAGGCGGCG  490

seq1  GAGTCCTTCTGTGCTGGCATACTGTCATGTTGGAGCGCCTGCACACATCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTCTGTGCTGGCATACTGTCATGTTGGAGCGCCTGCACACATCT  540

seq1  GGTGTCCAGGCACCATCTTTTCCTTCTCAGGCCCAGGAAGTATCCCTTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCAGGCACCATCTTTTCCTTCTCAGGCCCAGGAAGTATCCCTTCC  590

seq1  TGTTCCTTCTTGTCAAATGTTCCACTTTCGGCTAATTCTACATTTCCAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTCTTGTCAAATGTTCCACTTTCGGCTAATTCTACATTTCCAAC  640

seq1  AGCAAGAAAATGGAGTAATGGTATTATTTATAACCCACCATGACCCCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAAATGGAGTAATGGTATTATTTATAACCCACCATGACCCCTCT  690

seq1  GAGTCATGAAACAATGGGACGGTCTCTATGTGCTCCTAATGGCCTGTGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGAAACAATGGGACGGTCTCTATGTGCTCCTAATGGCCTGTGAC  740

seq1  TAATTCCCTTATGACATCAAGTCACACTGTGTGCCTGCCATGACTACCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCTTATGACATCAAGTCACACTGTGTGCCTGCCATGACTACCAG  790

seq1  CTTCCACACAGCAAGGAGCTGAAGACTGCCCAGAAGAGACAAAATCTCCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACACAGCAAGGAGCTGAAGACTGCCCAGAAGAGACAAAATCTCCC  840

seq1  CGCTACCCGCTACCCGCTACCCGCTACCCGCTACCCGCTACCCGCAATGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACCCGCTACCCGCTACCCGCTACCCGCTACCCGCTACCCGCAATGG  890

seq1  CTCCTTTCTTGACTAAGTCTTCTGAGGACACCTGGGTTCCCTCACAGGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCTTGACTAAGTCTTCTGAGGACACCTGGGTTCCCTCACAGGGC  940

seq1  AGACTCTCAGGTTTTTCTGTTAGCTTTCTGTCATGGACGATACAAGTTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCAGGTTTTTCTGTTAGCTTTCTGTCATGGACGATACAAGTTGT  990

seq1  GCATCAGTACATGGGAAGTGTTTCTCACCTGCTGGTCTGTATGGAAGCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTACATGGGAAGTGTTTCTCACCTGCTGGTCTGTATGGAAGCAA  1040

seq1  TAGGCGAGCCAGGTGCCAATAGTGATGGAGAAGAAATACATAGGGGGCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGAGCCAGGTGCCAATAGTGATGGAGAAGAAATACATAGGGGGCTC  1090

seq1  TGTGAGAATGTGCAAAATACTCTGCTCCCTGTCCTGATGAGTCCATCTCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAATGTGCAAAATACTCTGCTCCCTGTCCTGATGAGTCCATCTCC  1140

seq1  AAGGTGGAAGAATTTAAACTTAAAGGAGAATTC  1177
      |||||||||||||||||||||||||||||||||
seq2  AAGGTGGAAGAATTTAAACTTAAAGGAGAATTC  1173