BAC Information

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BAC

Clone NameB6Ng01-227G07
Chromosome3 (Build37)
Map Location 74,981,955 - 75,198,336
singlet/doubletdoublet
Overlap geneSerpini2, Wdr49
Upstream geneLOC619764, LOC667434, LOC100041551, EG667459, BC050789
Downstream genePdcd10, Serpini1, Golph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227G07.bB6Ng01-227G07.g
ACCGA041075GA041076
length1,1831,147
definitionB6Ng01-227G07.b B6Ng01-227G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,197,167 - 75,198,336)(74,981,955 - 74,983,106)
sequence
gaattcactgtgacagattaagtctgggagttcttgtggaaatctggatt
cgctataccagcctcaaagctcgaagcctgcataggactgctgttcaccc
ataattccatttgatcacaagtaaataaagcacaaattcaagttcaaaag
tagttctcacactctgatcttaatcctcgggagactcaaatctttgggga
atctgagatgtcaagagtatttttcttgtcagtttttcacaggtttacaa
tagatctttctagaggctacatgatgtatggagacctaattgatctggac
attaagggaatgtatgctcttgtattttgttttaacagttaatactttac
ttatgcaatgtagcaaatatataggttttattgggtatagatgaaagcta
ttttgattgaacaatgatttataaaactgtagagaaatctcaagaccaaa
agttttgagaaccacagggatagaatggtgggtagagtacttgatgtcaa
tttccaaaatgtgtgtctaagaggatcaaggaatcataatgcagccctct
ccaagggttgcctttataaggctggccgctgatctcttcaaagcaattcc
ctgactgtactgctatttactggaaacattctgctttgaggaatcttact
ttcttactaacttctaagaaatcctttctcttttgttttaaacgtgtgtc
gggatagacgtttataaatctgggatatagccaatgggttctactctctg
tctccttttgtgccatctttaaggcttttgttttgtctggatttgacgat
gatcttctctcctattgtagattttgcattctgcccacatttcaatgtta
tttcattccagctgggcttcagagtggaagcctcaccttggcttcccata
aaagcagcttgcaatatttctgcaaatttatttatgtctgtgtcgacttt
tccttttcttcccccccccccccccaactcctctctaagagaatgtgcta
agctacacagagtctattaaagccactgcattgttcctcaccagccagcc
aggagacctttatgttgaccttgcctggaggaagaccccctggaaagtca
attttgagagtttagttactgaagtgacctcaccgggctgcaggcatgtt
tcatagtgtttcgcaccaaatttcttaaggagg

gaattcagcactgaaaatcaatccaaggacaagaggacaatgaacaagtg
cacatacagtaaaacgatggagaaagaaatgagttcaacttgaaaaaatt
aattttgtcatataaatagggaataattaaaataaaatataggtatttat
ttcagaaatgatgagaatttttaatatacatcagtgccatcagcataaag
ataattaacgatgctaaaggaggatttaaaatattataaaagccttcaaa
gatgaaggttatgtcattaagaaagatgcgtgtacctctacacacaggct
tcaaactagcaatgggctttcatcctaaagaccttaccgcaagttgctca
gaaataaggctaacaagatggctggattttttaccatctaggggaaacag
atactgttaatcacaaactccagtacttctagtcttgaaagtgatgtttc
ctttagtttgagctatttttattgtttgataaaagatgctgagccatatg
catatgtatccctttccatcttcttcataactgcataatctccacaacac
taaacacacctagaaatgtttttgtgtacatctgaaagtattgactgtaa
ccttaagccaaacttcttcttcctctgattcaggtaataagcctgtctct
gtccttttatctgcggctgtacttttcagctttgtactacacagcaagag
gagaagctttcatttttagttacaaattcattactgtaatcctcaactct
cctcaagtgtcattcatactttcgtgcagacaagcaagcaggtcgtcatg
tggtcacaaaaaggatccagaaagagaaaaggaaagaaatagtaccactc
cctaagtctgtcttgtggaggcttcaagtctcctaagcaaaatatttcaa
ttgcttgtgtaaatgaaaccagacagctttccaagtataacccatatgac
atggcatctttcagaaaaatgagctgcaaaaaaagaacccttttttgaca
ttatagcctcagattatatagtgtagcatttcttatttccactgagactt
ataacagtgaccatgacaccaatatcacccaggcttcctctagcagcagc
gatctgtcctctggggacctccttgcaacctactcaagctcatgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75197167_75198336
seq2: B6Ng01-227G07.b_45_1227 (reverse)

seq1  CCTCCTTTAAGAAATCT-GTGC-AAACACTATGAACACTGCCTGCAGCCC  48
      ||||| ||||||||| | |||| ||||||||||||   ||||||||||||
seq2  CCTCC-TTAAGAAATTTGGTGCGAAACACTATGAAACATGCCTGCAGCCC  49

seq1  GCTGA-GTCACTTCAGTTACTTTAACTCTCAAAA-TGGCTTTCCA-GGGG  95
      | ||| ||||||||||| || | ||||||||||| || ||||||| ||||
seq2  GGTGAGGTCACTTCAGTAAC-TAAACTCTCAAAATTGACTTTCCAGGGGG  98

seq1  TCTTCCT-CAG--CAGGTC-ACAT-AAGGTCT-CTGGCTGGCT-GTGA-G  137
      ||||||| |||   ||||| |||| ||||||| |||||||||| |||| |
seq2  TCTTCCTCCAGGCAAGGTCAACATAAAGGTCTCCTGGCTGGCTGGTGAGG  148

seq1  AAC-ATGCAGTGCTTTTAATAGACTCTGTGTAGCTTAGCACATTCTCTTA  186
      ||| ||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AACAATGCAGTGGCTTTAATAGACTCTGTGTAGCTTAGCACATTCTCTTA  198

seq1  GAGAGGAGTT-GGGGGGGGGGGGGGAAGAAAAGGAAAAGTCGACACAGAC  235
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGTTGGGGGGGGGGGGGGGAAGAAAAGGAAAAGTCGACACAGAC  248

seq1  ATAAATAAATTTGCAGAAATATTGCAAGCTGCTTTTATGGGAAGCCAAGG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATTTGCAGAAATATTGCAAGCTGCTTTTATGGGAAGCCAAGG  298

seq1  TGAGGCTTCCACTCTGAAGCCCAGCTGGAATGAAATAACATTGAAATGTG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTCCACTCTGAAGCCCAGCTGGAATGAAATAACATTGAAATGTG  348

seq1  GGCAGAATGCAAAATCTACAATAGGAGAGAAGATCATCGTCAAATCCAGA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATGCAAAATCTACAATAGGAGAGAAGATCATCGTCAAATCCAGA  398

seq1  CAAAACAAAAGCCTTAAAGATGGCACAAAAGGAGACAGAGAGTAGAACCC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAAGCCTTAAAGATGGCACAAAAGGAGACAGAGAGTAGAACCC  448

seq1  ATTGGCTATATCCCAGATTTATAAACGTCTATCCCGACACACGTTTAAAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTATATCCCAGATTTATAAACGTCTATCCCGACACACGTTTAAAA  498

seq1  CAAAAGAGAAAGGATTTCTTAGAAGTTAGTAAGAAAGTAAGATTCCTCAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGAAAGGATTTCTTAGAAGTTAGTAAGAAAGTAAGATTCCTCAA  548

seq1  AGCAGAATGTTTCCAGTAAATAGCAGTACAGTCAGGGAATTGCTTTGAAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATGTTTCCAGTAAATAGCAGTACAGTCAGGGAATTGCTTTGAAG  598

seq1  AGATCAGCGGCCAGCCTTATAAAGGCAACCCTTGGAGAGGGCTGCATTAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCGGCCAGCCTTATAAAGGCAACCCTTGGAGAGGGCTGCATTAT  648

seq1  GATTCCTTGATCCTCTTAGACACACATTTTGGAAATTGACATCAAGTACT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTGATCCTCTTAGACACACATTTTGGAAATTGACATCAAGTACT  698

seq1  CTACCCACCATTCTATCCCTGTGGTTCTCAAAACTTTTGGTCTTGAGATT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACCATTCTATCCCTGTGGTTCTCAAAACTTTTGGTCTTGAGATT  748

seq1  TCTCTACAGTTTTATAAATCATTGTTCAATCAAAATAGCTTTCATCTATA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAGTTTTATAAATCATTGTTCAATCAAAATAGCTTTCATCTATA  798

seq1  CCCAATAAAACCTATATATTTGCTACATTGCATAAGTAAAGTATTAACTG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAAACCTATATATTTGCTACATTGCATAAGTAAAGTATTAACTG  848

seq1  TTAAAACAAAATACAAGAGCATACATTCCCTTAATGTCCAGATCAATTAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAAATACAAGAGCATACATTCCCTTAATGTCCAGATCAATTAG  898

seq1  GTCTCCATACATCATGTAGCCTCTAGAAAGATCTATTGTAAACCTGTGAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATACATCATGTAGCCTCTAGAAAGATCTATTGTAAACCTGTGAA  948

seq1  AAACTGACAAGAAAAATACTCTTGACATCTCAGATTCCCCAAAGATTTGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACAAGAAAAATACTCTTGACATCTCAGATTCCCCAAAGATTTGA  998

seq1  GTCTCCCGAGGATTAAGATCAGAGTGTGAGAACTACTTTTGAACTTGAAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCGAGGATTAAGATCAGAGTGTGAGAACTACTTTTGAACTTGAAT  1048

seq1  TTGTGCTTTATTTACTTGTGATCAAATGGAATTATGGGTGAACAGCAGTC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTATTTACTTGTGATCAAATGGAATTATGGGTGAACAGCAGTC  1098

seq1  CTATGCAGGCTTCGAGCTTTGAGGCTGGTATAGCGAATCCAGATTTCCAC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGGCTTCGAGCTTTGAGGCTGGTATAGCGAATCCAGATTTCCAC  1148

seq1  AAGAACTCCCAGACTTAATCTGTCACAGTGAATTC  1170
      |||||||||||||||||||||||||||||||||||
seq2  AAGAACTCCCAGACTTAATCTGTCACAGTGAATTC  1183


seq1: chr3_74981955_74983106
seq2: B6Ng01-227G07.g_66_1212

seq1  GAATTCAGCACTGAAAATCAATCCAAGGACAAGAGGACAATGAACAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTGAAAATCAATCCAAGGACAAGAGGACAATGAACAAGTG  50

seq1  CACATACAGTAAAACGATGGAGAAAGAAATGAGTTCAACTTGAAAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGTAAAACGATGGAGAAAGAAATGAGTTCAACTTGAAAAAATT  100

seq1  AATTTTGTCATATAAATAGGGAATAATTAAAATAAAATATAGGTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCATATAAATAGGGAATAATTAAAATAAAATATAGGTATTTAT  150

seq1  TTCAGAAATGATGAGAATTTTTAATATACATCAGTGCCATCAGCATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATGATGAGAATTTTTAATATACATCAGTGCCATCAGCATAAAG  200

seq1  ATAATTAACGATGCTAAAGGAGGATTTAAAATATTATAAAAGCCTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAACGATGCTAAAGGAGGATTTAAAATATTATAAAAGCCTTCAAA  250

seq1  GATGAAGGTTATGTCATTAAGAAAGATGCGTGTACCTCTACACACAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGTTATGTCATTAAGAAAGATGCGTGTACCTCTACACACAGGCT  300

seq1  TCAAACTAGCAATGGGCTTTCATCCTAAAGACCTTACCGCAAGTTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTAGCAATGGGCTTTCATCCTAAAGACCTTACCGCAAGTTGCTCA  350

seq1  GAAATAAGGCTAACAAGATGGCTGGATTTTTTACCATCTAGGGGAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGGCTAACAAGATGGCTGGATTTTTTACCATCTAGGGGAAACAG  400

seq1  ATACTGTTAATCACAAACTCCAGTACTTCTAGTCTTGAAAGTGATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTAATCACAAACTCCAGTACTTCTAGTCTTGAAAGTGATGTTTC  450

seq1  CTTTAGTTTGAGCTATTTTTATTGTTTGATAAAAGATGCTGAGCCATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTGAGCTATTTTTATTGTTTGATAAAAGATGCTGAGCCATATG  500

seq1  CATATGTATCCCTTTCCATCTTCTTCATAACTGCATAATCTCCACAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATCCCTTTCCATCTTCTTCATAACTGCATAATCTCCACAACAC  550

seq1  TAAACACACCTAGAAATGTTTTTGTGTACATCTGAAAGTATTGACTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACACCTAGAAATGTTTTTGTGTACATCTGAAAGTATTGACTGTAA  600

seq1  CCTTAAGCCAAACTTCTTCTTCCTCTGATTCAGGTAATAAGCCTGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGCCAAACTTCTTCTTCCTCTGATTCAGGTAATAAGCCTGTCTCT  650

seq1  GTCCTTTTATCTGCGGCTGTACTTTTCAGCTTTGTACTACACAGCAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTATCTGCGGCTGTACTTTTCAGCTTTGTACTACACAGCAAGAG  700

seq1  GAGAAGCTTTCATTTTTAGTTACAAATTCATTACTGTAATCCTCAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTTTCATTTTTAGTTACAAATTCATTACTGTAATCCTCAACTCT  750

seq1  CCTCAAGTGTCATTCATACTTTCGTGCAGACAAGCAAGCAGGTCGTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGTGTCATTCATACTTTCGTGCAGACAAGCAAGCAGGTCGTCATG  800

seq1  TGGTCACAAAAAGGATCCAGAAAGAGAAAAGGAAAGAAATAGTACCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAAAAAGGATCCAGAAAGAGAAAAGGAAAGAAATAGTACCACTC  850

seq1  CCTAAGTCTGTCTTGTGGAGGCTTCAAGTCTCCTAAGCAAAATATTTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTCTGTCTTGTGGAGGCTTCAAGTCTCCTAAGCAAAATATTTCAA  900

seq1  TTGCTTGTGTAAATGAAACCAGACAGC-TTCCAAGTATAACCCATATGAC  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGCTTGTGTAAATGAAACCAGACAGCTTTCCAAGTATAACCCATATGAC  950

seq1  AATGGCATC-TTCAGAAAAATGAGCTGCAAAAAAAGAACCTTTTTTGAAC  998
       |||||||| |||||||||||||||||||||||||||||| |||||  ||
seq2  -ATGGCATCTTTCAGAAAAATGAGCTGCAAAAAAAGAACCCTTTTTTGAC  999

seq1  ATTATAGCCTCAGATTTAATATAAGTGTAGCATTTCTTATTTCCACTGAG  1048
      ||||||||||||||||  |||| |||||||||||||||||||||||||||
seq2  ATTATAGCCTCAGATT--ATAT-AGTGTAGCATTTCTTATTTCCACTGAG  1046

seq1  GAACTTATAAACAGTGACCATGAACACCAATAATCACCCAGCCTT-CTCT  1097
        |||||| ||||||||||||| |||||||| ||||||||| ||| ||||
seq2  --ACTTAT-AACAGTGACCATG-ACACCAAT-ATCACCCAGGCTTCCTCT  1091

seq1  AGCAGGCAGCGATCTG--CTCTGGGGA-CTCCTGGCAATCATACTCAGGC  1144
      |||| |||||||||||  ||||||||| ||||| |||| | |||||| ||
seq2  AGCA-GCAGCGATCTGTCCTCTGGGGACCTCCTTGCAA-CCTACTCAAGC  1139

seq1  TCATGACC  1152
      ||||||||
seq2  TCATGACC  1147


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