BAC Information

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BAC

Clone NameB6Ng01-228A14
Chromosome3 (Build37)
Map Location 12,854,350 - 13,007,025
singlet/doubletdoublet
Overlap geneEG668033, LOC668037
Upstream geneEG621965, LOC100039798
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228A14.bB6Ng01-228A14.g
ACCGA041548GA041549
length1,1401,173
definitionB6Ng01-228A14.b B6Ng01-228A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,005,875 - 13,007,025)(12,854,350 - 12,855,514)
sequence
gaattctattttcaactttttcttctttcataacatttatacttgtcaga
aactacttttctttatgttgtatgtttgtttttatttctactttcagttg
aaatttcatctttggtgtgcagaacaatgaacagattgttgaacagatgt
tccagataaataggtagaatttttttatggaaactgtagttttgaagcat
ctaaagctagtttttccatacattttaaaattaatgaggagaatatagtt
atatttcatagtctagttttaccaaggagcaattgcaaactcattatcat
catcatatttcttttgtgtgtatgtttcttccttttctgtgtgccttttt
ttcttgcttagtttcctcatatttttttctcacttcttttatttctgtac
agatatcggatttctctgagtgttgcttataacatttattcttgttccta
aagtctaacatttactggattttgcaaaagaggaaattaaaatagcgagc
tcagtagttcaaggtcagttattaatgtctagccctatgaggagacacta
gagatacaaatgatgatactgggttttgaggaggatctgcatgaggtttt
tattattgcttattatgaagataagtcattgagtatatcaacttacacat
tgcatccagtttaatgactctctttattgttgcacagaactgtgcatcag
catagattataagctactgtttttgttttttaatctcccattcaggaaat
gaatatccctccatgaaatattaatactctcagccttcagcttctaagat
atgacctattttttagcagtcattcttactgaatatagtaaaaagtaagg
tttgtttattaaaataaaatgtcagaaacacatgagtttgctagtgatta
ttaatttcctgtagctgaatttgacattgttttgactggtccagagaaat
aacaggataatgaaacagaaaaaagacaaacaaaattctctatgtatacc
aagacagtcctgttaagggaaacctgtacaactattgtgtacttgagtga
ttcctagatactaaatagttttgttgttacatgcattctatttgaaacaa
aatattatatggtccacatgatatattacacaaactattt

gaattcatttttgaacacattttgaattgatttgtttccattctaattat
ttaaaaatatagtcaactttttattgtagattctgcttcttttgactatt
tagtcatgcttaatcctgaaatagatgtcttatttctttttgaatcgata
tgaataggtcctagatataatttttagcaaaactaatatgtattcacctt
ctttagactggatagagacttatctcttcagatccatttaactcattgac
tgacaacagtggtgtgatacttttgagccaaagcaagagtatgttccaaa
gacaacactatcatccataagcagaatgaccatgcttatttgacacaatg
actcaaatcatgattctagttgccctgattattactgatgaaagagatca
aaggagaattctttataagatttaacggatgcatgtgtagtctaccaagc
accctgactcttttgcttgtatttctacaatgccaagatgtgtcccatat
gtatcagaagatgctggcagcttgaaatattgctcaaaattgaaataata
taagttcagtggcactttattgtctaaaaactcaatgaaagtttgagtta
gaaacagagagtgctatatttttagagaaatgatactaccctgctgaaag
atagatttatcattattttgttgtcattattcagggtatcggagatgggc
attccaagatttgtatgaatttggttttgccttagcaatattgttcctga
aaacaatacacagagacttgtagtaatccaacccatgcttgtttggaacc
tttctttctcaaggaaacaagctatatcaaggactaccccaccaatttta
ttacatgactatgattgaagtagatttcttcttgcttctttgaatgcatc
aggaggttccatattctcattaaataagtaagagcctataatatgaaggt
ttatactgtggtttaggtaacccaagatatactaatataaactacaggat
atgaagatgattatgtattgtgaaagatatctatgatggagataaacatt
tatccagaattgtaatgttagaatcatcctgagaattactgagccaaagg
atgtgagtttcccaggactgtttctataaatctgatggaatgttaaactg
gctttgtgacctacaccatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13005875_13007025
seq2: B6Ng01-228A14.b_43_1182 (reverse)

seq1  AAATAATTTTGTGTAAATATATTCATGTGGA-CATATAATATTTTGTTTC  49
      |||| | ||||||| |||||| ||||||||| ||||||||||||||||||
seq2  AAAT-AGTTTGTGT-AATATA-TCATGTGGACCATATAATATTTTGTTTC  47

seq1  AAATTAGGAATGCATGTA--CACAAAACTATTTAGTATCTAGGAATCACT  97
      ||||   |||||||||||   |||||||||||||||||||||||||||||
seq2  AAAT--AGAATGCATGTAACAACAAAACTATTTAGTATCTAGGAATCACT  95

seq1  CAAAGTACACAATTAGTTTGTACAGGTTTTCCCTTAACAGGACTTGTCTT  147
      | |||||||||| ||| ||||||||| |||||||||||||||| ||||||
seq2  C-AAGTACACAA-TAG-TTGTACAGG-TTTCCCTTAACAGGAC-TGTCTT  140

seq1  GGTATACATAGAGAATTTTTGTTTTGTCTTTTTTCTGTTTCATTATCCTG  197
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  GGTATACATAGAGAATTTT--GTTTGTCTTTTTTCTGTTTCATTATCCTG  188

seq1  TTTATTTCTTCTGGACCAGTCAAAACAATGTCAAATTCAGCTACAGGAAA  247
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -TTATTTC-TCTGGACCAGTCAAAACAATGTCAAATTCAGCTACAGGAAA  236

seq1  TTAATAATCACTAGCAAACTCATGTGTTTCTGACATTTTATTTTAATAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCACTAGCAAACTCATGTGTTTCTGACATTTTATTTTAATAAA  286

seq1  CAAACCTTACTTTTTACTATATTCAGTAAGAATGACTGCTAAAAAATAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTACTTTTTACTATATTCAGTAAGAATGACTGCTAAAAAATAGG  336

seq1  TCATATCTTAGAAGCTGAAGGCTGAGAGTATTAATATTTCATGGAGGGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTTAGAAGCTGAAGGCTGAGAGTATTAATATTTCATGGAGGGAT  386

seq1  ATTCATTTCCTGAATGGGAGATTAAAAAACAAAAACAGTAGCTTATAATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTCCTGAATGGGAGATTAAAAAACAAAAACAGTAGCTTATAATC  436

seq1  TATGCTGATGCACAGTTCTGTGCAACAATAAAGAGAGTCATTAAACTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATGCACAGTTCTGTGCAACAATAAAGAGAGTCATTAAACTGGA  486

seq1  TGCAATGTGTAAGTTGATATACTCAATGACTTATCTTCATAATAAGCAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTGTAAGTTGATATACTCAATGACTTATCTTCATAATAAGCAAT  536

seq1  AATAAAAACCTCATGCAGATCCTCCTCAAAACCCAGTATCATCATTTGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACCTCATGCAGATCCTCCTCAAAACCCAGTATCATCATTTGTA  586

seq1  TCTCTAGTGTCTCCTCATAGGGCTAGACATTAATAACTGACCTTGAACTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTGTCTCCTCATAGGGCTAGACATTAATAACTGACCTTGAACTA  636

seq1  CTGAGCTCGCTATTTTAATTTCCTCTTTTGCAAAATCCAGTAAATGTTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCGCTATTTTAATTTCCTCTTTTGCAAAATCCAGTAAATGTTAG  686

seq1  ACTTTAGGAACAAGAATAAATGTTATAAGCAACACTCAGAGAAATCCGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGAACAAGAATAAATGTTATAAGCAACACTCAGAGAAATCCGAT  736

seq1  ATCTGTACAGAAATAAAAGAAGTGAGAAAAAAATATGAGGAAACTAAGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACAGAAATAAAAGAAGTGAGAAAAAAATATGAGGAAACTAAGCA  786

seq1  AGAAAAAAAGGCACACAGAAAAGGAAGAAACATACACACAAAAGAAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGGCACACAGAAAAGGAAGAAACATACACACAAAAGAAATAT  836

seq1  GATGATGATAATGAGTTTGCAATTGCTCCTTGGTAAAACTAGACTATGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGATAATGAGTTTGCAATTGCTCCTTGGTAAAACTAGACTATGAA  886

seq1  ATATAACTATATTCTCCTCATTAATTTTAAAATGTATGGAAAAACTAGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTATATTCTCCTCATTAATTTTAAAATGTATGGAAAAACTAGCT  936

seq1  TTAGATGCTTCAAAACTACAGTTTCCATAAAAAAATTCTACCTATTTATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGCTTCAAAACTACAGTTTCCATAAAAAAATTCTACCTATTTATC  986

seq1  TGGAACATCTGTTCAACAATCTGTTCATTGTTCTGCACACCAAAGATGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATCTGTTCAACAATCTGTTCATTGTTCTGCACACCAAAGATGAA  1036

seq1  ATTTCAACTGAAAGTAGAAATAAAAACAAACATACAACATAAAGAAAAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACTGAAAGTAGAAATAAAAACAAACATACAACATAAAGAAAAGT  1086

seq1  AGTTTCTGACAAGTATAAATGTTATGAAAGAAGAAAAAGTTGAAAATAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGACAAGTATAAATGTTATGAAAGAAGAAAAAGTTGAAAATAGA  1136

seq1  ATTC  1151
      ||||
seq2  ATTC  1140


seq1: chr3_12854350_12855514
seq2: B6Ng01-228A14.g_65_1237

seq1  GAATTCATTTTTGAACACATTTTGAATTGATTTGTTTCCATTCTAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTGAACACATTTTGAATTGATTTGTTTCCATTCTAATTAT  50

seq1  TTAAAAATATAGTCAACTTTTTATTGTAGATTCTGCTTCTTTTGACTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATAGTCAACTTTTTATTGTAGATTCTGCTTCTTTTGACTATT  100

seq1  TAGTCATGCTTAATCCTGAAATAGATGTCTTATTTCTTTTTGAATCGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATGCTTAATCCTGAAATAGATGTCTTATTTCTTTTTGAATCGATA  150

seq1  TGAATAGGTCCTAGATATAATTTTTAGCAAAACTAATATGTATTCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGTCCTAGATATAATTTTTAGCAAAACTAATATGTATTCACCTT  200

seq1  CTTTAGACTGGATAGAGACTTATCTCTTCAGATCCATTTAACTCATTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACTGGATAGAGACTTATCTCTTCAGATCCATTTAACTCATTGAC  250

seq1  TGACAACAGTGGTGTGATACTTTTGAGCCAAAGCAAGAGTATGTTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAGTGGTGTGATACTTTTGAGCCAAAGCAAGAGTATGTTCCAAA  300

seq1  GACAACACTATCATCCATAAGCAGAATGACCATGCTTATTTGACACAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACACTATCATCCATAAGCAGAATGACCATGCTTATTTGACACAATG  350

seq1  ACTCAAATCATGATTCTAGTTGCCCTGATTATTACTGATGAAAGAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATCATGATTCTAGTTGCCCTGATTATTACTGATGAAAGAGATCA  400

seq1  AAGGAGAATTCTTTATAAGATTTAACGGATGCATGTGTAGTCTACCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATTCTTTATAAGATTTAACGGATGCATGTGTAGTCTACCAAGC  450

seq1  ACCCTGACTCTTTTGCTTGTATTTCTACAATGCCAAGATGTGTCCCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACTCTTTTGCTTGTATTTCTACAATGCCAAGATGTGTCCCATAT  500

seq1  GTATCAGAAGATGCTGGCAGCTTGAAATATTGCTCAAAATTGAAATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAAGATGCTGGCAGCTTGAAATATTGCTCAAAATTGAAATAATA  550

seq1  TAAGTTCAGTGGCACTTTATTGTCTAAAAACTCAATGAAAGTTTGAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCAGTGGCACTTTATTGTCTAAAAACTCAATGAAAGTTTGAGTTA  600

seq1  GAAACAGAGAGTGCTATATTTTTAGAGAAATGATACTACCCTGCTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAGAGTGCTATATTTTTAGAGAAATGATACTACCCTGCTGAAAG  650

seq1  ATAGATTTATCATTATTTTGTTGTCATTATTCAGGGTATCGGAGATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTATCATTATTTTGTTGTCATTATTCAGGGTATCGGAGATGGGC  700

seq1  ATTCCAAGATTTGTATGAATTTGGTTTTGCCTTAGCAATATTGTTCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGATTTGTATGAATTTGGTTTTGCCTTAGCAATATTGTTCCTGA  750

seq1  AAACAATACACAGAGACTTGTAGTAATCCAACCCATGCTTGTTTGGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATACACAGAGACTTGTAGTAATCCAACCCATGCTTGTTTGGAACC  800

seq1  TTTCTTTCTCAAGGAAACAAGCTATATCAAGGACTACCCCACCAATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCAAGGAAACAAGCTATATCAAGGACTACCCCACCAATTTTA  850

seq1  TTACATGACTATGATTGAAGTAGATTTCTTCTTGCTTCTTTGAATGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGACTATGATTGAAGTAGATTTCTTCTTGCTTCTTTGAATGCATC  900

seq1  AGGAGGTTCCATATTCTCATTAAATAAGTAAGAGCCTATAATATGAAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTCCATATTCTCATTAAATAAGTAAGAGCCTATAATATGAAGGT  950

seq1  TTATACTGTGGTTTAGGTAA-CCAAGATATACTAATATAAACTACAGGAT  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATACTGTGGTTTAGGTAACCCAAGATATACTAATATAAACTACAGGAT  1000

seq1  ATGAAAGATGA-TATGTATTGTGAAAGATATCTATGATGGAGATAAAACA  1048
      ||| ||||||| |||||||||||||||||||||||||||||||| |||||
seq2  ATG-AAGATGATTATGTATTGTGAAAGATATCTATGATGGAGAT-AAACA  1048

seq1  TTTATCCAG-ATTGTAATGTTAGATTCATCTTGAG-ATAACTGAGC--AA  1094
      ||||||||| |||||||||||||| ||||| |||| || |||||||  ||
seq2  TTTATCCAGAATTGTAATGTTAGAATCATCCTGAGAATTACTGAGCCAAA  1098

seq1  AGATGTTGAGTTT-CCAAGACTGTTTCTATAATCCTGTTGGAAATGT--A  1141
       |||| ||||||| ||| ||||||||||||||  ||| ||| |||||  |
seq2  GGATG-TGAGTTTCCCAGGACTGTTTCTATAAATCTGATGG-AATGTTAA  1146

seq1  ACTG--TTTGTGACCTACACC-TATGT  1165
      ||||  ||||||||||||||| |||||
seq2  ACTGGCTTTGTGACCTACACCATATGT  1173


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