BAC Information

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BAC

Clone NameB6Ng01-228B16
Chromosome3 (Build37)
Map Location 63,757,389 - 63,905,531
singlet/doubletdoublet
Overlap geneSlc33a1, Gmps, LOC670032, EG56544
Upstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik
Downstream gene4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228B16.bB6Ng01-228B16.g
ACCGA041600GA041601
length1,1231,168
definitionB6Ng01-228B16.b B6Ng01-228B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,904,418 - 63,905,531)(63,757,389 - 63,758,550)
sequence
gaattcacatttaattggtatctttaaaaatatataaacttctataaata
taaagaaaataacatatcaaatcaactcacccttgatgactcagtgttcc
aaaatattgtagaattcgttggaataacaagctcaaagtttgtagatcta
aagttaaatctcccaactgtcacaaaggaaatttctccctcatcatctaa
gtgccagtttaggacatcatagtgtccatttttcaaatctccattatcat
ccagaattacccatttatcctcatgtgatttaaatttaatttctttcata
tagtacattagctagaaagcaacacaaagtaaaaaacaatagaagaaaac
attttgaaaaaattcaatggtcttaaaaataattttatatagaaaagcat
ttcaaacacatatttaattcatgaaattacaagacttgttcttagtctct
ctcttttttttttaatgtactatgacaatctctatccacatgtgtaaatg
aaacttcaagcatggttggcaatatggtgatgcactttaaatgtaaatgc
attctaaagatttcactcagaagtttcttgcaaggccgtagaagctgttg
tcatgtaggctaggcaaagtcaaaataggggaaatgtagggtgcaatgct
gatgctttgacctggaatctgcatgtgaaacccaattggttcttgataga
gcgatcaataaagattctagctgtcgatggctgggcagaagaggtgggac
ttctaggttctggcaggcagactaggagatgcaaggaaagaaaaaattgc
cattgctttggagagaaagagagctaacaaccatgtgagatctctggtgg
agtgaccattggccgcttgccccactgggtctgaggtagcacacgggaga
ttaaaaagaaacctgaactaagggcaaatttagtgtgctgagcaagagaa
aagaaaaacccgggcaaaataagtttgaagggcagatttagagatactga
gcttagactgaaggttaactgagcaactaaacttgagggcataagaggtg
ttgagctgagatgatgttaaggcagtttagccacaggaggcttagagtgc
ctggcccattggatgaaaggcgt
gaattcaataggttttaaataaatccccatatagttcttcatctttgtaa
ggcacactcacatacccagtattaagggctcgttccctgcaacagtagag
agcttcatggtgatcattctcattccaaccattactattcacgacagtag
cttcacattgacaaaagtcttcaagatttcaagacaaagtttacttagaa
gtgatatttgatatcatcacttttaaaatatatttagtaggcaggaaata
ttgctttgcattgttaaattctatggtattagaagaggacttatggaaag
acatcgaaagtatcccatgatgataaatttgtttaaacatctcttacctt
tgacgttagaatcagaaggcaaaaggccagaactgctggcatttttataa
ttgagaatagcagcttgtaagtgtctgtgatcccttgggtctcttctttt
actattgacgcttctctgttttcttttttcagaagggctactaatgttgt
tgttattaaaaatacagttccccagaaaaatagaaaatctgaaattaaga
gtgttttagtttataattaatttttgaaaattaacttcattgatgctaaa
taaaacacaacttttcttaacctacattttttttttaattttatgctata
aactttaggtttgaggcttagcaaatgaatgaaacagtcctgactctgtt
aagcatagagactcaaaactgactgatacatatcctgggtcaggggtgag
gttacagatgtgattgaattttgtatgactatcttgtcacttttttacag
agaaaaaagtaggtagggtaaagaaatgtttttatagaccataaggttca
ttagttatacttacatatccaagcatttcttgtgctaaattatgaacaat
gcagatgataagaatgcatgattgaaccaagcatggtggtgcacaccttg
taaccccagcactcaagacaacttgagcaagtttgaggctagcctgagct
ccaagtaaattcaaggtcagttcagaatccacagagcagaacctgtctca
aaagaagaaattagaacaagggtgtgcctggaacatacctatattctagc
acttggaagaattagcagcaagaatccacacctagacagggtagacaagg
ccagtcttggtatatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63904418_63905531
seq2: B6Ng01-228B16.b_46_1164 (reverse)

seq1  ACGCCTTTTAACTCAAT-GGCCAGGCACTTCTAAGCCTCCTGTGGCTAAC  49
      |||||||| | | |||| |||||||||| |||||||||||||||||||| 
seq2  ACGCCTTTCATC-CAATGGGCCAGGCAC-TCTAAGCCTCCTGTGGCTAAA  48

seq1  CTGCCCTTACCTTCATTCTCAGCTCAACACCTC-TATGCCCTC-AGTTTA  97
      ||| ||||| | ||| ||||||||||||||||| ||||||||| ||||||
seq2  CTG-CCTTAACATCA-TCTCAGCTCAACACCTCTTATGCCCTCAAGTTTA  96

seq1  GTTGCTCAGTT-ACCTTCAGTCCTAGCTCAGTATCTCTAAATCTG-CCTT  145
      ||||||||||| ||||||||||  ||||||||||||||||||||| ||||
seq2  GTTGCTCAGTTAACCTTCAGTCTAAGCTCAGTATCTCTAAATCTGCCCTT  146

seq1  C-AACTTA-TTTGCCC-GGTTTTTCTTTCTCT-TTGCTCAGCACACTAAA  191
      | |||||| ||||||| ||||||||||| ||| |||||||||||||||||
seq2  CAAACTTATTTTGCCCGGGTTTTTCTTT-TCTCTTGCTCAGCACACTAAA  195

seq1  TTTGCCCTTAGTTCAGTTTTCTTTTTAATCTCCCGTGTGCTACCTCAGAC  241
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGCCCTTAGTTCAGGTTTCTTTTTAATCTCCCGTGTGCTACCTCAGAC  245

seq1  CCAGTGGGGCAAGCGGCCAATGGTCACTCCACCAGAGATCTCACATGGTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGGCAAGCGGCCAATGGTCACTCCACCAGAGATCTCACATGGTT  295

seq1  GTTAGCTCTCTTTCTCTCCAAAGC-ATGGCAATTTTTTCTTTCCTTGCAT  340
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTAGCTCTCTTTCTCTCCAAAGCAATGGCAATTTTTTCTTTCCTTGCAT  345

seq1  CTCCTAGTCTGCCTGCCAGAACCTAGAAGTCCCACCTCTTCTGCCCAGCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTCTGCCTGCCAGAACCTAGAAGTCCCACCTCTTCTGCCCAGCC  395

seq1  ATCGACAGCTAGAATCTTTATTGATCGCTCTATCAAGAACCAATTGGGTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACAGCTAGAATCTTTATTGATCGCTCTATCAAGAACCAATTGGGTT  445

seq1  TCACATGCAGATTCCAGGTCAAAGCATCAGCATTGCACCCTACATTTCCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCAGATTCCAGGTCAAAGCATCAGCATTGCACCCTACATTTCCC  495

seq1  CTATTTTGACTTTGCCTAGCCTACATGACAACAGCTTCTACGGCCTTGCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGACTTTGCCTAGCCTACATGACAACAGCTTCTACGGCCTTGCA  545

seq1  AGAAACTTCTGAGTGAAATCTTTAGAATGCATTTACATTTAAAGTGCATC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCTGAGTGAAATCTTTAGAATGCATTTACATTTAAAGTGCATC  595

seq1  ACCATATTGCCAACCATGCTTGAAGTTTCATTTACACATGTGGATAGAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTGCCAACCATGCTTGAAGTTTCATTTACACATGTGGATAGAGA  645

seq1  TTGTCATAGTACATTAAAAAAAAAAGAGAGAGACTAAGAACAAGTCTTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAGTACATTAAAAAAAAAAGAGAGAGACTAAGAACAAGTCTTGT  695

seq1  AATTTCATGAATTAAATATGTGTTTGAAATGCTTTTCTATATAAAATTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATGAATTAAATATGTGTTTGAAATGCTTTTCTATATAAAATTAT  745

seq1  TTTTAAGACCATTGAATTTTTTCAAAATGTTTTCTTCTATTGTTTTTTAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACCATTGAATTTTTTCAAAATGTTTTCTTCTATTGTTTTTTAC  795

seq1  TTTGTGTTGCTTTCTAGCTAATGTACTATATGAAAGAAATTAAATTTAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTGCTTTCTAGCTAATGTACTATATGAAAGAAATTAAATTTAAA  845

seq1  TCACATGAGGATAAATGGGTAATTCTGGATGATAATGGAGATTTGAAAAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAGGATAAATGGGTAATTCTGGATGATAATGGAGATTTGAAAAA  895

seq1  TGGACACTATGATGTCCTAAACTGGCACTTAGATGATGAGGGAGAAATTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTATGATGTCCTAAACTGGCACTTAGATGATGAGGGAGAAATTT  945

seq1  CCTTTGTGACAGTTGGGAGATTTAACTTTAGATCTACAAACTTTGAGCTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGACAGTTGGGAGATTTAACTTTAGATCTACAAACTTTGAGCTT  995

seq1  GTTATTCCAACGAATTCTACAATATTTTGGAACACTGAGTCATCAAGGGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCAACGAATTCTACAATATTTTGGAACACTGAGTCATCAAGGGT  1045

seq1  GAGTTGATTTGATATGTTATTTTCTTTATATTTATAGAAGTTTATATATT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATTTGATATGTTATTTTCTTTATATTTATAGAAGTTTATATATT  1095

seq1  TTTAAAGATACCAATTAAATGTGA  1114
      ||||||||||||||||||||||||
seq2  TTTAAAGATACCAATTAAATGTGA  1119

seq1: chr3_63757389_63758550
seq2: B6Ng01-228B16.g_69_1236

seq1  GAATTCAATAGGTTTTAAATAAATCCCCATATAGTTCTTCATCTTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGGTTTTAAATAAATCCCCATATAGTTCTTCATCTTTGTAA  50

seq1  GGCACACTCACATACCCAGTATTAAGGGCTCGTTCCCTGCAACAGTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTCACATACCCAGTATTAAGGGCTCGTTCCCTGCAACAGTAGAG  100

seq1  AGCTTCATGGTGATCATTCTCATTCCAACCATTACTATTCACGACAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATGGTGATCATTCTCATTCCAACCATTACTATTCACGACAGTAG  150

seq1  CTTCACATTGACAAAAGTCTTCAAGATTTCAAGACAAAGTTTACTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATTGACAAAAGTCTTCAAGATTTCAAGACAAAGTTTACTTAGAA  200

seq1  GTGATATTTGATATCATCACTTTTAAAATATATTTAGTAGGCAGGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTTGATATCATCACTTTTAAAATATATTTAGTAGGCAGGAAATA  250

seq1  TTGCTTTGCATTGTTAAATTCTATGGTATTAGAAGAGGACTTATGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCATTGTTAAATTCTATGGTATTAGAAGAGGACTTATGGAAAG  300

seq1  ACATCGAAAGTATCCCATGATGATAAATTTGTTTAAACATCTCTTACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGAAAGTATCCCATGATGATAAATTTGTTTAAACATCTCTTACCTT  350

seq1  TGACGTTAGAATCAGAAGGCAAAAGGCCAGAACTGCTGGCATTTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTAGAATCAGAAGGCAAAAGGCCAGAACTGCTGGCATTTTTATAA  400

seq1  TTGAGAATAGCAGCTTGTAAGTGTCTGTGATCCCTTGGGTCTCTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATAGCAGCTTGTAAGTGTCTGTGATCCCTTGGGTCTCTTCTTTT  450

seq1  ACTATTGACGCTTCTCTGTTTTCTTTTTTCAGAAGGGCTACTAATGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGACGCTTCTCTGTTTTCTTTTTTCAGAAGGGCTACTAATGTTGT  500

seq1  TGTTATTAAAAATACAGTTCCCCAGAAAAATAGAAAATCTGAAATTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAAAAATACAGTTCCCCAGAAAAATAGAAAATCTGAAATTAAGA  550

seq1  GTGTTTTAGTTTATAATTAATTTTTGAAAATTAACTTCATTGATGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGTTTATAATTAATTTTTGAAAATTAACTTCATTGATGCTAAA  600

seq1  TAAAACACAACTTTTCTTAACCTACATTTTTTTTTTAATTTTATGCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACAACTTTTCTTAACCTACATTTTTTTTTTAATTTTATGCTATA  650

seq1  AACTTTAGGTTTGAGGCTTAGCAAATGAATGAAACAGTCCTGACTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGGTTTGAGGCTTAGCAAATGAATGAAACAGTCCTGACTCTGTT  700

seq1  AAGCATAGAGACTCAAAACTGACTGATACATATCCTGGGTCAGGGGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAGAGACTCAAAACTGACTGATACATATCCTGGGTCAGGGGTGAG  750

seq1  GTTACAGATGTGATTGAATTTTGTATGACTATCTTGTCAC-TTTTTACAG  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTACAGATGTGATTGAATTTTGTATGACTATCTTGTCACTTTTTTACAG  800

seq1  AGAAAAAAGTAGGTAGGGTAAAGAAATGTTTTTATAGACCATAAGGTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGTAGGTAGGGTAAAGAAATGTTTTTATAGACCATAAGGTTCA  850

seq1  TTAGTTATACTTACATATCCAAGCATTTCTTGTGCTAAATTATG-ACAAT  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAGTTATACTTACATATCCAAGCATTTCTTGTGCTAAATTATGAACAAT  900

seq1  GCAGATGATAAGAATGCATGATTGAACCAAGCATGGTGGTGCACACC-TG  947
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAGATGATAAGAATGCATGATTGAACCAAGCATGGTGGTGCACACCTTG  950

seq1  TAACCCCAGCACTCAGGAC-ACTGAGGCAAGTTTGAGGCTAGCCTGAGCT  996
      ||||||||||||||| ||| |||   ||||||||||||||||||||||||
seq2  TAACCCCAGCACTCAAGACAACTTGAGCAAGTTTGAGGCTAGCCTGAGCT  1000

seq1  CCAAAGTTAATTCAAGGTCAG-TCAGAAT-CACAGAGCAAGACCCTGTCT  1044
      || |||| ||||||||||||| ||||||| |||||||| ||| |||||||
seq2  CC-AAGTAAATTCAAGGTCAGTTCAGAATCCACAGAGC-AGAACCTGTCT  1048

seq1  CAAAA-AAGAGAAATAGA--CAGGGTGTG-CTGGAACATACCTATAATTC  1090
      ||||| |||| || ||||   |||||||| ||||||||||||||| ||||
seq2  CAAAAGAAGA-AATTAGAACAAGGGTGTGCCTGGAACATACCTAT-ATTC  1096

seq1  TAGCACTTGGAAGATATAGCCAGCAGGA--TCACCACTAGACAGGGAGTT  1138
      ||||||||||||||  ||| ||||| ||   |||  ||||||||||    
seq2  TAGCACTTGGAAGAATTAG-CAGCAAGAATCCACACCTAGACAGGGTAGA  1145

seq1  TAAAGCCAGCCTTGGGTATATGTA  1162
       || ||||| ||| ||||||||||
seq2  CAAGGCCAGTCTT-GGTATATGTA  1168