BAC Information

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BAC

Clone NameB6Ng01-228C10
Chromosome3 (Build37)
Map Location 92,877,266 - 92,878,234
singlet/doubletsinglet
Overlap geneEG229571
Upstream geneLor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m
Downstream geneCrnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C10.bB6Ng01-228C10.g
ACCGA041635GA041636
length9531,112
definitionB6Ng01-228C10.b B6Ng01-228C10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaggcagaaaatttttctgaaaagttttcaacatcatagaaggg
gctatttaggagaaattaaaacaaatctaaaaattatctattattgtatc
ctatactgtaaagagtaaataatctctacttcttcttttcaggttccagt
tttaaatccaaagtacctcaagcagaaatgtcaggggaactggaagccaa
gagcagggacgacacacagagccatgaacagaaattgtgctacaggtgga
ccattagcaacttctctttttttgttgaggaaacggaggaatatattaca
agcccagtgttctcattagaggacaatgacaaaatgacatggtgtttgag
agtatacccaaccggggttgatgaaaaaaacaaagattacgtgtcacttt
atctgattttgctcagctgtgaaaagggctcagtttgggcaaaggcgagg
tttgtatcttaaatgccaagggtgaaaaatgcaatacagaaaggatccca
agcttttctagaatactgcagtaccaggcccttggatttgaaaagtttat
cattcgacataccttcttgtctctagcccaagtgctaacaccagatgaca
aatttaccgtcctctgcaaggtgagcgtactccaagactccttcagcatt
tctggacagaacccaagacctgcaatcaaggttacaaggtgcgcattgga
agatgacgtaggggagctgtgggagattccctcttcacagactgctgcct
gttggtagctggccatgaattcagggctcacaaggtcatcctggcagctc
gctctccagttttcagagccatgtttgacatgaaatgaaggtgagactac
aaaccgtgttgagaccatgactgatcccaagtcttcaagagatgatgggc
tcatctacactggaagcatcacactccacagctatctatggcatgatgtg
ctg
gaattccatgggtacctttggccaatgtctcaacaagatgtaaactatta
tcagatactgtacttggtggcttaagatgtctagttgaaacagtgtctcc
tccattatttgatgacttcatttagagtcttttcatatatacacacattt
ggctaataatcacatataagaaaagcagaatatttgtcttttagggtctg
gattacatcaggataaactttcctagctccatccatttatttgaaaattt
cattttttaacaagtgaataatatttcattgtgtaaatataaacattttc
atgattcttcagttgatagatatctacactatttctaatttctgcctatt
atgaatatatcaacagcaaatatggatgagcaaatacctctatagtaaaa
tttccagttttcatgtgtatgcccaacacttgtatagctgaatcttgagg
cacatcaattcccaacattctgagcaacaagcccactgatttccaaagtg
gcagcaccagtttaggctcccacaggcagtgaataaatatgattatgtat
gtgtggctgtgcgttgatatatgcttgtgagcacaggtgtcctccgaggc
taagatctctaagagctggaattaaaaagttgtgagccaccttgtatggt
gctggggacagaaatatgttcctttagaaaaactgcaccttttccctgtt
gggccacgtctctagccccattctgtcccttgcttaactactctggtgaa
aatttctaatactgtttaattttggtaaagtgccttttgtgttgcttttg
gttttacagaatttttctttatcatttgatgcttcattgtgggtttatta
aatatagtgtctacatgttgagttataataatttcatagttatttactca
cggattatatcctgaaaggatgttgaatgtttattatcccttcatccatt
gaatgattgaatagttttcgatctttgcttagtttgcatgttgtgaatct
gggttatacttgcattgacagatcttccgttatttgactctaggtaagct
cctgtgacatgtctggtaatatttctatatgtttagaattgtcccaacat
ccagggtgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92877266_92878234
seq2: B6Ng01-228C10.b_45_997

seq1  GAATTCTAGGCAGAAAATTTTTCTGAAAAGTTTTCAACATCATAGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCAGAAAATTTTTCTGAAAAGTTTTCAACATCATAGAAGGG  50

seq1  GCTATTTAGGAGAAATTAAAACAAATCTAAAAATTATCTATTATTGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTAGGAGAAATTAAAACAAATCTAAAAATTATCTATTATTGTATC  100

seq1  CTATACTGTAAAGAGTAAATAATCTCTACTTCTTCTTTTCAGGTTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTGTAAAGAGTAAATAATCTCTACTTCTTCTTTTCAGGTTCCAGT  150

seq1  TTTAAATCCAAAGTACCTCAAGCAGAAATGTCAGGGGAACTGGAAGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCCAAAGTACCTCAAGCAGAAATGTCAGGGGAACTGGAAGCCAA  200

seq1  GAGCAGGGACGACACACAGAGCCATGAACAGAAATTGTGCTACAGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGACGACACACAGAGCCATGAACAGAAATTGTGCTACAGGTGGA  250

seq1  CCATTAGCAACTTCTCTTTTTTTGTTGAGGAAACGGAGGAATATATTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCAACTTCTCTTTTTTTGTTGAGGAAACGGAGGAATATATTACA  300

seq1  AGCCCAGTGTTCTCATTAGAGGACAATGACAAAATGACATGGTGTTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGTTCTCATTAGAGGACAATGACAAAATGACATGGTGTTTGAG  350

seq1  AGTATACCCAACCGGGGTTGATGAAAAAAACAAAGATTACGTGTCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACCCAACCGGGGTTGATGAAAAAAACAAAGATTACGTGTCACTTT  400

seq1  ATCTGATTTTGCTCAGCTGTGAAAAGGGCTCAGTTTGGGCAAAGTTCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  ATCTGATTTTGCTCAGCTGTGAAAAGGGCTCAGTTTGGGCAAAG-GCGAG  449

seq1  GTTTGTATCTTAAATGCCAAGGGTGAAAAATGCAATACAGAAAGGATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATCTTAAATGCCAAGGGTGAAAAATGCAATACAGAAAGGATCCC  499

seq1  AAGCTTTTCTAGAATACTGCAGTACCAGGCCCTTGGATTTGAAAAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTCTAGAATACTGCAGTACCAGGCCCTTGGATTTGAAAAGTTTA  549

seq1  TCATTCGACATACCTTCTTGTCTCTAGCCCAAGTGCTAACACCAGATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCGACATACCTTCTTGTCTCTAGCCCAAGTGCTAACACCAGATGAC  599

seq1  AAATTTACCGTCCTCTGCAAGGTGAGCGTACTCCAAGACTCCTTCAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACCGTCCTCTGCAAGGTGAGCGTACTCCAAGACTCCTTCAGCAT  649

seq1  TTCTGGACAGAACCCAAGACCTGCAATCAAGGTTACAAGGTGCGCATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACAGAACCCAAGACCTGCAATCAAGGTTACAAGGTGCGCATTGG  699

seq1  AAGATGACGTAGGGGAGCTGTGGGAGAATTCCCTCTTCACAGACTGCTGC  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGATGACGTAGGGGAGCTGTGGGAG-ATTCCCTCTTCACAGACTGCTGC  748

seq1  CTGTTGGTAGCTGGCCATGAATTCAGGGCTCACAAGGTCATCCTGGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTAGCTGGCCATGAATTCAGGGCTCACAAGGTCATCCTGGCAGC  798

seq1  TCGCTCTCCAGTTTTCAGAGCCATGTTTGAACATGAAATGAAGGTGAGAC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCGCTCTCCAGTTTTCAGAGCCATGTTTG-ACATGAAATGAAGGTGAGAC  847

seq1  TAACAAACCGTGTTGAGATCCATGACCTGGATCCCCAAGTCTTCAAAGAG  900
      | |||||||||||||||| |||||||   ||| ||||||||||| |||||
seq2  T-ACAAACCGTGTTGAGA-CCATGAC--TGAT-CCCAAGTCTTC-AAGAG  891

seq1  ATGATGGGCTTCATCTACACTGGGAAGGCATCACACCTCCACAGCTACTC  950
      ||||||||| |||||||||||||  | |||||||| ||||||||||| ||
seq2  ATGATGGGC-TCATCTACACTGG--AAGCATCACA-CTCCACAGCTA-TC  936

seq1  TATGGCCAGTGATGTGCTG  969
      ||||||   ||||||||||
seq2  TATGGC--ATGATGTGCTG  953