This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-228C18
Chromosome
3 (Build37)
Map Location
115,019,082 - 115,020,297
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC100043220
,
Olfm3
Downstream gene
EG546808
,
Edg1
,
Dph5
,
LOC626061
,
Slc30a7
,
Extl2
,
Vcam1
,
Gpr88
,
Cdc14a
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100043220
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043220
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
Olfm3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:229759
MGI:2387329
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
EG546808
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:546808
MGI:3646101
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Edg1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13609
MGI:1096355
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dph5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:69740
MGI:1916990
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC626061
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:626061
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 45 ESTs, 4 Proteins
pseudo
: _no_value
name
Slc30a7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:66500
MGI:1913750
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Extl2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:58193
MGI:1889574
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Vcam1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22329
MGI:98926
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpr88
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:64378
MGI:1927653
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cdc14a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:229776
MGI:2442676
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Olfm3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133892898
GeneID:229759
MGI:2387329
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: olfactomedin 3
transcript_id
: NM_153458.2
name
Olfm3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133892210
GeneID:229759
MGI:2387329
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: olfactomedin 3
transcript_id
: NM_153157.2
name
Edg1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142384665
GeneID:13609
MGI:1096355
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: endothelial differentiation sphingolipid G-protein-coupled receptor 1
transcript_id
: NM_007901.4
name
Dph5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:40254182
GeneID:69740
MGI:1916990
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: DPH5 homolog (S. cerevisiae)
transcript_id
: NM_027193.2
name
Slc30a7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142354123
GeneID:66500
MGI:1913750
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: solute carrier family 30 (zinc transporter), member 7
transcript_id
: NM_023214.4
name
Extl2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142356073
GeneID:58193
MGI:1889574
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: exotoses (multiple)-like 2
transcript_id
: NM_021388.3
name
Vcam1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31981429
GeneID:22329
MGI:98926
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: vascular cell adhesion molecule 1
transcript_id
: NM_011693.2
name
Gpr88
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:11967952
GeneID:64378
MGI:1927653
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G-protein coupled receptor 88
transcript_id
: NM_022427.1
name
Cdc14a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124249116
GeneID:229776
MGI:2442676
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: CDC14 cell division cycle 14 homolog A (S. cerevisiae)
transcript_id
: NM_001080818.1
name
Olfm3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23618873
CCDS:CCDS17779.1
GeneID:229759
MGI:2387329
definition
GO_component
: GO:0005615 - extracellular space [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform A is encoded by transcript variant A; optimedin
product
: olfactomedin 3 isoform A
protein_id
: NP_703188.1
name
Olfm3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23346605
CCDS:CCDS17780.1
GeneID:229759
MGI:2387329
definition
GO_component
: GO:0005615 - extracellular space [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform B is encoded by transcript variant B; optimedin
product
: olfactomedin 3 isoform B
protein_id
: NP_694797.1
name
Edg1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21687214
CCDS:CCDS17781.1
GeneID:13609
MGI:1096355
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0001619 - lysosphingolipid and lysophosphatidic acid receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0001525 - angiogenesis [Evidence IDA]; GO:0007420 - brain development [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007193 - G-protein signaling, adenylate cyclase inhibiting pathway [Evidence IDA]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0030155 - regulation of cell adhesion [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: endothelial differentiation gene 1
product
: endothelial differentiation sphingolipid G-protein-coupled receptor 1
protein_id
: NP_031927.2
name
Dph5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:40254183
CCDS:CCDS17782.1
GeneID:69740
MGI:1916990
definition
GO_function
: GO:0004164 - diphthine synthase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0008152 - metabolism [Evidence IEA]; GO:0017183 - peptidyl-diphthamide biosynthesis from peptidyl-histidine [Evidence IEA]
codon_start
: 1
product
: diphthine synthase
protein_id
: NP_081469.2
name
Slc30a7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12963579
CCDS:CCDS17783.1
GeneID:66500
MGI:1913750
definition
GO_component
: GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]
GO_function
: GO:0008270 - zinc ion binding [Evidence IC]; GO:0005385 - zinc ion transporter activity [Evidence IDA]
GO_process
: GO:0006829 - zinc ion transport [Evidence IDA]
codon_start
: 1
product
: zinc transporter like 2
protein_id
: NP_075703.1
name
Extl2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31981138
CCDS:CCDS17784.1
GeneID:58193
MGI:1889574
definition
GO_component
: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0001888 - glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: exotoses (multiple)-like 2
protein_id
: NP_067363.2
name
Vcam1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31981430
CCDS:CCDS17785.1
GeneID:22329
MGI:98926
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO_function
: GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: vascular cell adhesion molecule 1
protein_id
: NP_035823.2
name
Gpr88
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:11967953
GeneID:64378
MGI:1927653
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence ISS]
GO_process
: GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
product
: G-protein coupled receptor 88
protein_id
: NP_071872.1
name
Cdc14a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124249117
GeneID:229776
MGI:2442676
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]
GO_process
: GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]
codon_start
: 1
product
: CDC14 cell division cycle 14 homolog A
protein_id
: NP_001074287.1
name
LOC100043220
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100043220
definition
number
: 1
pseudo
: _no_value
name
EG546808
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:546808
definition
number
: 1
pseudo
: _no_value
name
LOC626061
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149251455
GeneID:626061
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 45 ESTs, 4 Proteins
product
: similar to E74-like factor 1
pseudo
: _no_value
transcript_id
: XR_034929.1
clone name
MSMg01-512P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-464K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-490M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-266G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-326F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-382H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-169L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-318D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290A21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-426I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542I01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176H06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-506J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-265G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-431J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-184N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086J15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098O06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-425J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-101E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124A04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-277F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-172A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-517C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-403P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-370G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-263F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-370N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-265M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-365D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-140G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-235F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-260P15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-319L06
singlet/doublet
doublet
plural/unique
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doublet
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