BAC Information

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BAC

Clone NameB6Ng01-228D14
Chromosome3 (Build37)
Map Location 82,593,375 - 82,755,470
singlet/doubletdoublet
Overlap geneEG633285, Lrat
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
Downstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228D14.bB6Ng01-228D14.g
ACCGA041687GA041688
length1,183185
definitionB6Ng01-228D14.b B6Ng01-228D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,754,328 - 82,755,470)(82,593,375 - 82,593,559)
sequence
gaattcaaagcataactgtttaataactcctatagtaaattaattctggc
tctggatgctggtatatgtctgaaattcccacaccttgtcaggcaaggct
ggaggattataagttgttagctagcctgggctacacagcaagactctgtg
aaggatcgtgcttagtgggtgagtttcccttctcgttggagtcaaaagtt
taaaaataatttccaagcaagtcagcaatatagacagtaaacaaagagaa
ttaaacagtagacaaggagaataagcctcaggcataaataatttattttt
cactccaaaaagaaaaaatttcattaagtttattttttacagattctgaa
ctaggcaataaaagtcaccatgcatcttcagttagatatattatattaaa
aagacagaaataaattggtcttatacattattagaaatcaggctcagata
taactgagtctcagttaatgccaaaaatacatacacaaaactggactgtg
tgtgtacttgactgttgataattatttaaatatcagtgcaacactttttt
cctacatattttccttgtgaacagccataaaattccatgtgacccagata
acaggcatccgcatcaggaacttactgctggggcactgaagcaaagctta
atagctgtaagtgattttcactaataggaaaggaagaagacatacccacc
cggcccccaccattgacccttgtttcacattaaaatgaccgtagtttgac
accaacgtgacagctggttcaaacagcctgagatttcaaagtgctttgag
tacatataaatattatgactgatcgcagaaagtgttggaagacattttta
ggaaaggtcctcggcttaacagcttactgaattctccctttccgttggga
aaagaaataccacaattttttgttttatctttttggatttacaggaaaca
ttattaaaaattattacaaaccccagataattgaaactcaataagaacca
agactgcagggttaagtctagaatgccgaacttgctgttgtgttgcagca
cacttttcggttccagaattccctggaagttttgattgacgaagggcttc
acttctctgcttccagtattaaacttcttacaatgtgagagttcaatagt
gaggagtccacagaatacttgtccttcctgctt
acatgcaaaactcagaacggctcttcccagaccaaagaaatccatcttgt
atttattttgttttgtgtgcatgcatatgtatgtgtgtgtatgtatatgt
gtatatatgtatatatgtgtgtgtacatgtgtgtatacatatgtgtgtgt
acttgtgtgtgtgtgtgtgtgtgtgtacttgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82754328_82755470
seq2: B6Ng01-228D14.b_43_1225 (reverse)

seq1  AAGCAGGAGG---CAGT-GTCTGTG--CT-CTCACTATTGACATCT--CA  41
      |||||||| |    |||  ||||||  || |||||||||||  |||  ||
seq2  AAGCAGGAAGGACAAGTATTCTGTGGACTCCTCACTATTGAACTCTCACA  50

seq1  TTGT-AGATG-TTAAT-CTGG-AGCAG---AGTG-AGCC--TCGTC-ATC  80
      |||| ||| | ||||| |||| |||||   |||| ||||  ||||| |||
seq2  TTGTAAGAAGTTTAATACTGGAAGCAGAGAAGTGAAGCCCTTCGTCAATC  100

seq1  AAA--CTCCAGG--AATCT-GAACCGAAAA--GTGCTGC-ACACAACAGC  122
      |||   ||||||  | ||| ||||||||||  ||||||| ||||||||||
seq2  AAAACTTCCAGGGAATTCTGGAACCGAAAAGTGTGCTGCAACACAACAGC  150

seq1  -AGTTC-GCA-TCTAGACTTAA-CCTGCAGTCTTGGTTC-TATTGAGTTT  167
       ||||| ||| ||||||||||| |||||||||||||||| ||||||||||
seq2  AAGTTCGGCATTCTAGACTTAACCCTGCAGTCTTGGTTCTTATTGAGTTT  200

seq1  CAATTATCTGGGGTTTGTTATTATTTTT-ATTATGTTTCCTGTAAATCC-  215
      |||||||||||||||||| || |||||| || ||||||||||||||||| 
seq2  CAATTATCTGGGGTTTGTAATAATTTTTAATAATGTTTCCTGTAAATCCA  250

seq1  AAAAGATAAAAC-AAAAATTGTGGTATTTCTTTT-CCAACGGAAAGGGAG  263
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AAAAGATAAAACAAAAAATTGTGGTATTTCTTTTCCCAACGGAAAGGGAG  300

seq1  AATTCAGTAAGCTGTTAAGCCGAGGACCTTTCCT-AAAATGTCTTCCAAC  312
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTCAGTAAGCTGTTAAGCCGAGGACCTTTCCTAAAAATGTCTTCCAAC  350

seq1  ACTTTCTGCGATCAGTCATAATATTTATATGTACTC-AAGCACTTTGAAA  361
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTTCTGCGATCAGTCATAATATTTATATGTACTCAAAGCACTTTGAAA  400

seq1  TCTCAGGCTGTTTGAACCAGCTGTCACGTTGGTGTCAAACTACGGTCATT  411
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCTGTTTGAACCAGCTGTCACGTTGGTGTCAAACTACGGTCATT  450

seq1  TTAATGTGAAACAAGGGTCAATGGTGGGGGCCGGGTGGGTATGTCTTCTT  461
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGAAACAAGGGTCAATGGTGGGGGCCGGGTGGGTATGTCTTCTT  500

seq1  CCTTTCCTATTAGTG-AAATCACTTACAGCTATTAAGCTTTGCTTCAGTG  510
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTATTAGTGAAAATCACTTACAGCTATTAAGCTTTGCTTCAGTG  550

seq1  CCCCAGCAGTAAGTTCCTGATGCGGATGCCTGTTATCTGGGTCACATGGA  560
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCAGTAAGTTCCTGATGCGGATGCCTGTTATCTGGGTCACATGGA  600

seq1  ATTTTATGGCTGTTCACAAGGAAAATATGTAGGAAAAAAGTGTTGCACTG  610
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGCTGTTCACAAGGAAAATATGTAGGAAAAAAGTGTTGCACTG  650

seq1  ATATTTAAATAATTATCAACAGTCAAGTACACACACAGTCCAGTTTTGTG  660
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATAATTATCAACAGTCAAGTACACACACAGTCCAGTTTTGTG  700

seq1  TATGTATTTTTGGCATTAACTGAGACTCAGTTATATCTGAGCCTGATTTC  710
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTTTGGCATTAACTGAGACTCAGTTATATCTGAGCCTGATTTC  750

seq1  TAATAATGTATAAGACCAATTTATTTCTGTCTTTTTAATATAATATATCT  760
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGTATAAGACCAATTTATTTCTGTCTTTTTAATATAATATATCT  800

seq1  AACTGAAGATGCATGGTGACTTTTATTGCCTAGTTCAGAATCTGTAAAAA  810
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGATGCATGGTGACTTTTATTGCCTAGTTCAGAATCTGTAAAAA  850

seq1  ATAAACTTAATGAAATTTTTTCTTTTTGGAGTGAAAAATAAATTATTTAT  860
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTAATGAAATTTTTTCTTTTTGGAGTGAAAAATAAATTATTTAT  900

seq1  GCCTGAGGCTTATTCTCCTTGTCTACTGTTTAATTCTCTTTGTTTACTGT  910
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGCTTATTCTCCTTGTCTACTGTTTAATTCTCTTTGTTTACTGT  950

seq1  CTATATTGCTGACTTGCTTGGAAATTATTTTTAAACTTTTGACTCCAACG  960
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGCTGACTTGCTTGGAAATTATTTTTAAACTTTTGACTCCAACG  1000

seq1  AGAAGGGAAACTCACCCACTAAGCACGATCCTTCACAGAGTCTTGCTGTG  1010
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAAACTCACCCACTAAGCACGATCCTTCACAGAGTCTTGCTGTG  1050

seq1  TAGCCCAGGCTAGCTAACAACTTATAATCCTCCAGCCTTGCCTGACAAGG  1060
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGGCTAGCTAACAACTTATAATCCTCCAGCCTTGCCTGACAAGG  1100

seq1  TGTGGGAATTTCAGACATATACCAGCATCCAGAGCCAGAATTAATTTACT  1110
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAATTTCAGACATATACCAGCATCCAGAGCCAGAATTAATTTACT  1150

seq1  ATAGGAGTTATTAAACAGTTATGCTTTGAATTC  1143
      |||||||||||||||||||||||||||||||||
seq2  ATAGGAGTTATTAAACAGTTATGCTTTGAATTC  1183

seq1: chr3_82593375_82593559
seq2: B6Ng01-228D14.g_71_255

seq1  ACATGCAAAACTCAGAACGGCTCTTCCCAGACCAAAGAAATCCATCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAAACTCAGAACGGCTCTTCCCAGACCAAAGAAATCCATCTTGT  50

seq1  ATTTATTTTGTTTTGTGTGCATGCATATGTATGTGTGTGTATGTATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGTTTTGTGTGCATGCATATGTATGTGTGTGTATGTATATGT  100

seq1  GTATATATGTATATATGTGTGTGTACATGTGTGTATACATATGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGTATATATGTGTGTGTACATGTGTGTATACATATGTGTGTGT  150

seq1  ACATGTGTGTGTGTGTGTGTGTGTGTACATGTGTG  185
      || ||||||||||||||||||||||||| ||||||
seq2  ACTTGTGTGTGTGTGTGTGTGTGTGTACTTGTGTG  185