BAC Information

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BAC

Clone NameB6Ng01-228I14
Chromosome3 (Build37)
Map Location 118,516,074 - 118,628,128
singlet/doubletdoublet
Overlap geneDpyd
Upstream geneSnx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228I14.bB6Ng01-228I14.g
ACCGA041924GA041925
length1,143894
definitionB6Ng01-228I14.b B6Ng01-228I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,626,981 - 118,628,128)(118,516,074 - 118,516,964)
sequence
gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcttgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagcattatttataatagccagaagctggaaagaagcgttct
taagtactcacagtctgcttgatctgtgctaccttgggactctaaactcc
ttccaaatcccttgattctaagtgggggttctcttttattaaactgcatt
tctggaagtacactgtgcacatgcctttcccactttctccccagcaccac
ctagcccagagtctgagacagcaggctgtcagaacgtactaagcaaagaa
tcacctggaatgacagaaccaaagcttaccatcattgagatacttgttag
acctttttaaaaatacaaatgagacagcatcgcaacaaggaattctaaga
aaatatatctagtattgaggttgttctggccactttgctgctcatgacta
ttgccagttctctttcctgtattagtcactgggaagtcagttcctctaag
gctttgcaatagctaaaaccattctcctacctagcaattaaatccagtga
taggtactttttggaagtttattgcatattttcataagataaatacaata
tagtgaatttgactaatgatgatagcttctcaagttgattgttcatccct
tatcatccttcttcagccttatgcaaggagaagggatttagaacaacttg
aagtcaaaggacttgataagacaaataaactttctgtcagtgtccaccat
caatgtctagaaaagatcttgtcatttgaacaccaaatattgtataaaac
cacaattcaaaggcaaatatggtgtattgtaaaatcgtagtgt
gaattcaaagcattacaaccaatccctaacactcatctctttgggcagtt
ctatgaagaatgtctgtacacaggaaataggaccacacaatattcattgc
aagaattccaaattaaaagcataagaagtccggtactagaatactttgaa
ataattaaatggataattacatctcgtgagttaagcagacagagatacct
tctatgtgaaagaactgatggcatttcacgtttttctttgatttctttct
cttaagttcctttagaatgttagtgtttttgtgaagccgcatgtttaaat
cagtgctctgggagaatgcaatgcatatgatgtgcagctcattcatgtct
atgttgtacattttcatgctgaaaaccaaatccttcgacgttttgttgtg
gtggtttgagaaatgtaattttatgttcaatttcagtattttatactaaa
tataaacaaggaagatttatttcatcagaataaaggcttctttctctaga
agacaagcagtcaaatcccctagaaaggcttctctgacactccttgtttc
ttcaggactttatgacctgtctgtgacaatataattatctgttacttaga
aagacttggatccttactgcctttgcttctataacataattagtgttccc
tcaatttttttatcttgttcttctcactgagttttgggagaagagatagg
ataggcttttgttttatttgggatatatgtttggttgcttttggcaaact
tagtagagactagtccctttgggccaagtcaaggggtctgatagtgcagt
cattaaaactttcttcataccttcctacttccctgtggataaaggagagt
taagtacctgggcatgtgttcaatggcatagtgtatgatgaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118626981_118628128
seq2: B6Ng01-228I14.b_45_1187 (reverse)

seq1  ACACTACGATTTTTCCATTACACCATATTTGCTTTTGATTTGTGTTTTTA  50
      ||||||||| |||| || |||||||||||||| ||||| ||||| |||||
seq2  ACACTACGA-TTTTACAATACACCATATTTGCCTTTGAATTGTGGTTTTA  49

seq1  TTACAATATTTGGTGTTCCAAATGACAAAGGATCTTTTCTAGACATTGAT  100
       |||||||||||||||| ||||||||||  ||||||||||||||||||||
seq2  -TACAATATTTGGTGTT-CAAATGACAA--GATCTTTTCTAGACATTGAT  95

seq1  GGT-GACACTGACAGGAAGTTTATTTGTC-TATCAAGTCCTTTTGACTTC  148
      ||| ||||||||||| ||||||||||||| |||||||||| |||||||||
seq2  GGTGGACACTGACAGAAAGTTTATTTGTCTTATCAAGTCC-TTTGACTTC  144

seq1  CAGGTTGTCTAAATCCCCTTCTCCCTTGCATAAGGCTGAAGAAGGATGAT  198
       || |  ||||||| ||||||| |||||||||||||||||||||||||||
seq2  AAGTTGTTCTAAAT-CCCTTCT-CCTTGCATAAGGCTGAAGAAGGATGAT  192

seq1  AAGGGATGAACAATCAACTTGAGAAGCTATCATCATTAGTCAAATTCACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGAACAATCAACTTGAGAAGCTATCATCATTAGTCAAATTCACT  242

seq1  ATATTGTATTTATCTTATG-AAATATGCAATAAACTTCCAAAAAGTACCT  297
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATATTGTATTTATCTTATGAAAATATGCAATAAACTTCCAAAAAGTACCT  292

seq1  ATCACTGGATTTAATTGCTAGGTAGGAGAATGGTTTTAGCTATTGCAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGATTTAATTGCTAGGTAGGAGAATGGTTTTAGCTATTGCAAAG  342

seq1  CCTTAGAGGAACTGACTTCCCAGTGACTAATACAGGAAAGAGAACTGGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAGGAACTGACTTCCCAGTGACTAATACAGGAAAGAGAACTGGCA  392

seq1  ATAGTCATGAGCAGCAAAGTGGCCAGAACAACCTCAATACTAGATATATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATGAGCAGCAAAGTGGCCAGAACAACCTCAATACTAGATATATT  442

seq1  TTCTTAGAATTCCTTGTTGCGATGCTGTCTCATTTGTATTTTTAAAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAATTCCTTGTTGCGATGCTGTCTCATTTGTATTTTTAAAAAGG  492

seq1  TCTAACAAGTATCTCAATGATGGTAAGCTTTGGTTCTGTCATTCCAGGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAGTATCTCAATGATGGTAAGCTTTGGTTCTGTCATTCCAGGTG  542

seq1  ATTCTTTGCTTAGTACGTTCTGACAGCCTGCTGTCTCAGACTCTGGGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGCTTAGTACGTTCTGACAGCCTGCTGTCTCAGACTCTGGGCTA  592

seq1  GGTGGTGCTGGGGAGAAAGTGGGAAAGGCATGTGCACAGTGTACTTCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCTGGGGAGAAAGTGGGAAAGGCATGTGCACAGTGTACTTCCAG  642

seq1  AAATGCAGTTTAATAAAAGAGAACCCCCACTTAGAATCAAGGGATTTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTTTAATAAAAGAGAACCCCCACTTAGAATCAAGGGATTTGGA  692

seq1  AGGAGTTTAGAGTCCCAAGGTAGCACAGATCAAGCAGACTGTGAGTACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTAGAGTCCCAAGGTAGCACAGATCAAGCAGACTGTGAGTACTT  742

seq1  AAGAACGCTTCTTTCCAGCTTCTGGCTATTATAAATAATGCTGCTATGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGCTTCTTTCCAGCTTCTGGCTATTATAAATAATGCTGCTATGAA  792

seq1  CATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATA  842

seq1  TGCCCAAGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTT  892

seq1  CTGAGGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATC  942

seq1  CCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATC  992

seq1  TGCTGTCACCTGAATTTTTGATCTTAGACATTCTGACTGGTGTGAGGTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCACCTGAATTTTTGATCTTAGACATTCTGACTGGTGTGAGGTGG  1042

seq1  AATCTTAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGA  1092

seq1  ACATTTTTTCAGGTGCTTCTCTGCCATTCTGTATTCCTCAGGTGAGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTCAGGTGCTTCTCTGCCATTCTGTATTCCTCAGGTGAGAATT  1142

seq1  C  1148
      |
seq2  C  1143

seq1: chr3_118516074_118516964
seq2: B6Ng01-228I14.g_68_961

seq1  GAATTCAAAGCATTACAACCAATCCCTAACACTCATCTCTTTGGGCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCATTACAACCAATCCCTAACACTCATCTCTTTGGGCAGTT  50

seq1  CTATGAAGAATGTCTGTACACAGGAAATAGGACCACACAATATTCATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAGAATGTCTGTACACAGGAAATAGGACCACACAATATTCATTGC  100

seq1  AAGAATTCCAAATTAAAAGCATAAGAAGTCCGGTACTAGAATACTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCCAAATTAAAAGCATAAGAAGTCCGGTACTAGAATACTTTGAA  150

seq1  ATAATTAAATGGATAATTACATCTCGTGAGTTAAGCAGACAGAGATACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAATGGATAATTACATCTCGTGAGTTAAGCAGACAGAGATACCT  200

seq1  TCTATGTGAAAGAACTGATGGCATTTCACGTTTTTCTTTGATTTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGAAAGAACTGATGGCATTTCACGTTTTTCTTTGATTTCTTTCT  250

seq1  CTTAAGTTCCTTTAGAATGTTAGTGTTTTTGTGAAGCCGCATGTTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTCCTTTAGAATGTTAGTGTTTTTGTGAAGCCGCATGTTTAAAT  300

seq1  CAGTGCTCTGGGAGAATGCAATGCATATGATGTGCAGCTCATTCATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCTGGGAGAATGCAATGCATATGATGTGCAGCTCATTCATGTCT  350

seq1  ATGTTGTACATTTTCATGCTGAAAACCAAATCCTTCGACGTTTTGTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTACATTTTCATGCTGAAAACCAAATCCTTCGACGTTTTGTTGTG  400

seq1  GTGGTTTGAGAAATGTAATTTTATGTTCAATTTCAGTATTTTATACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGAGAAATGTAATTTTATGTTCAATTTCAGTATTTTATACTAAA  450

seq1  TATAAACAAGGAAGATTTATTTCATCAGAATAAAGGCTTCTTTCTCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAGGAAGATTTATTTCATCAGAATAAAGGCTTCTTTCTCTAGA  500

seq1  AGACAAGCAGTCAAATCCCCTAGAAAGGCTTCTCTGACACTCCTTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCAGTCAAATCCCCTAGAAAGGCTTCTCTGACACTCCTTGTTTC  550

seq1  TTCAGGACTTTATGACCTGTCTGTGACAATATAATTATCTGTTACTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACTTTATGACCTGTCTGTGACAATATAATTATCTGTTACTTAGA  600

seq1  AAGACTTGGATCCTTACTGCCTTTGCTTCTATAACATAATTAGTGTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGGATCCTTACTGCCTTTGCTTCTATAACATAATTAGTGTTCCC  650

seq1  TCAATTTTTTTATCTTGTTCTTCTCACTGAGTTT--GGAGAAGAGATAGG  698
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TCAATTTTTTTATCTTGTTCTTCTCACTGAGTTTTGGGAGAAGAGATAGG  700

seq1  ATAGGCTTTTGTTTTATTTGGGATATATGTTTGGTTGCTTTTGGCAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTTTGTTTTATTTGGGATATATGTTTGGTTGCTTTTGGCAAACT  750

seq1  TAGTAGAGACTAGTCCCTTTGGCCAAAGTCAAGGGGTCTGATTGTGCAGT  798
      |||||||||||||||||||||| | ||||||||||||||||| |||||||
seq2  TAGTAGAGACTAGTCCCTTTGGGCCAAGTCAAGGGGTCTGATAGTGCAGT  800

seq1  CATTAAAAC-TTCCTCATACCTTCCTACTTCCCTGTGGATAAAGGAGAGT  847
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  CATTAAAACTTTCTTCATACCTTCCTACTTCCCTGTGGATAAAGGAGAGT  850

seq1  TAAGTA-CTGGGCATGTAGTTCAATGGCATAGTGTATGATGAACG  891
      |||||| |||||||||| |||||||||||||||||||||||||||
seq2  TAAGTACCTGGGCATGT-GTTCAATGGCATAGTGTATGATGAACG  894