BAC Information

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BAC

Clone NameB6Ng01-228J08
Chromosome3 (Build37)
Map Location 88,614,614 - 88,739,196
singlet/doubletdoublet
Overlap gene5830417I10Rik, Msto1, Dap3
Upstream geneInsrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228J08.bB6Ng01-228J08.g
ACCGA041960GA041961
length1,035895
definitionB6Ng01-228J08.b B6Ng01-228J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,738,172 - 88,739,196)(88,614,614 - 88,615,498)
sequence
gaattcacctagtgaatcttgctgaattaaaaattagctaaaataaagct
ggtatggtgcacacctttcatcccagcaaaagcagatgcgtctctgagtt
caaggccaacctggtctacatagtgagtcccacagcaaccaggctttgta
gatagattccttttcaaaacagacaaacaaattgactacattcagttcct
tctgagataagtttctcaggagttatgtcttttagctggggctaagcatt
cctcaaatgagcacttgctccatattttagacttctggcttaagagcacc
cttcacagttcctggttctgcagccctgctgtaaacaaacatctggggcc
tgggaaagataagcttgtgggatagccttgacgagtattcaggtttgtca
cgagtggtggtgcatgccttcaatcccagcactgttttccaatagtcaaa
ggtgtgacaccacactcttcctttctgagcgacttaactggtgtcttgtt
ggcaggactgttcctcctgtgactttaaactttgacaggctgggtacttt
tcccccatgcccagtgctggttctgtctcctagaaataaaatcagttgtg
tggtctctgtgcttctttaatgtgaaagaagagcttcatgagcctttttt
ccatgctgtccgaaactcattctttccatcttgatgtggccatactgtgg
ctgtgtagacatgtaaaagagatgcagatgccctccaccaagaaatcatc
tcagccgggcgggtttaacgtttgtccttaacagtcacctggtctcatga
atgcaaaatgaaataaattaaggaagtcctctggagtttccatggaaaca
gcatcatgcagctcttgccacattgtctgggagcatctctcttcatagct
taaaagaatccagggttggcaaataactttgttccccatcagcagttatt
tctggacaacttacttttcatcaggcccctgggtttggggttgccagcac
tttggtagactgtatattttgtgtggatttctgcc
gaattccattgcccttcaccagcagttcaaccccaggttccagaccttat
tccagccttgtaactggatgggagctatgcggctcattgaagacttcacc
caagtcagcattgactgcagccctcataaaaccgccaagaagactggtag
gagatgactgtgtcaagtccaggttgagattggcagtgaaagactcgagt
ctttaatgtgtttgctgtgattcttagggcacaggagatttgtaatttat
tctctctgtcttctatacattcaaggagaccgggcatgtagctcattggt
aaagtacttacctatacggagagacaaatgttcatagttcatttctaact
tgaggcttaactcccacagcactattacattcaagttgggaatgtcactg
ctactttctatattttttaaaattatatttatctaattccgcactcacac
acacacacacacacacacacgcacgcacgcacacacacacgaagagagag
gagaggaagggagcacacataccatagtacaccggacagctttggctgtt
gtttctccctctaccattgtgggtcccaggaagtaagttcaggccatcag
caggctcaggggcaggtttgtctattgagacatctcactggcatccagag
cgaataaccaaagtgtaatgtttttttttatctggaaagaacaaaacgtc
ttgttgaagatcttttttgtctgtagagacttttttttttctcgagacag
ggcttctctgtgtagcctgggctgtcctggaatctcactctgtagaccaa
ggctggccctcaaactccaaattctacctgccctctgccttccaagtgca
tggactaaaagtgtgcgccactatcacctggctgtaaagaaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88738172_88739196
seq2: B6Ng01-228J08.b_47_1081 (reverse)

seq1  GGCAGAAATCCACAACAAATATACA-TCTAACAAAGTGCTGGCAACCCCA  49
      ||||||||||||||  ||||||||| |||| |||||||||||||||||||
seq2  GGCAGAAATCCACACAAAATATACAGTCTACCAAAGTGCTGGCAACCCCA  50

seq1  AA-CCAGGGGCCTGATGAAAAGT-AGTTGTTCAGAAATAACTGCTGATGG  97
      || |||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AACCCAGGGGCCTGATGAAAAGTAAGTTGTCCAGAAATAACTGCTGATGG  100

seq1  GG-ACAAAGTT-TTTGCCA--CCTGGATTCTTTTAAGCTATGAAGAGAGA  143
      || |||||||| |||||||  |||||||||||||||||||||||||||||
seq2  GGAACAAAGTTATTTGCCAACCCTGGATTCTTTTAAGCTATGAAGAGAGA  150

seq1  TGCT-CCAGAC-ATGTGGCAAGAGCTGCATGATGCTGTTTCCATGGAAAC  191
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAGACAATGTGGCAAGAGCTGCATGATGCTGTTTCCATGGAAAC  200

seq1  TCCAGAGGACTTCCTTAATTTATTTCATTTTGCATTCATGAGACCAGGTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGACTTCCTTAATTTATTTCATTTTGCATTCATGAGACCAGGTG  250

seq1  ACTGTTAAGGACAAACGTTAAACCCGCCCGGCTGAGATGATTTCTTGGTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAAGGACAAACGTTAAACCCGCCCGGCTGAGATGATTTCTTGGTG  300

seq1  GAGGGCATCTGCATCTC-TTTACATGTCTACACAGCCACAGTATGGCCAC  340
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGGGCATCTGCATCTCTTTTACATGTCTACACAGCCACAGTATGGCCAC  350

seq1  ATCAAGATGGAAAGAATGAGTTTCGGACAGCATGGAAAAAAGGCTCATGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATGGAAAGAATGAGTTTCGGACAGCATGGAAAAAAGGCTCATGA  400

seq1  AGCTCTTCTTTCACATTAAAGAAGCACAGAGACCACACAACTGATTTTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCTTTCACATTAAAGAAGCACAGAGACCACACAACTGATTTTAT  450

seq1  TTCTAGGAGACAGAACCAGCACTGGGCATGGGGGAAAAGTACCCAGCCTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAGACAGAACCAGCACTGGGCATGGGGGAAAAGTACCCAGCCTG  500

seq1  TCAAAGTTTAAAGTCACAGGAGGAACAGTCCTGCCAACAAGACACCAGTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTAAAGTCACAGGAGGAACAGTCCTGCCAACAAGACACCAGTT  550

seq1  AAGTCGCTCAGAAAGGAAGAGTGTGGTGTCACACCTTTGACTATTGGAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGCTCAGAAAGGAAGAGTGTGGTGTCACACCTTTGACTATTGGAAA  600

seq1  ACAGTGCTGGGATTGAAGGCATGCACCACCACTCGTGACAAACCTGAATA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGGGATTGAAGGCATGCACCACCACTCGTGACAAACCTGAATA  650

seq1  CTCGTCAAGGCTATCCCACAAGCTTATCTTTCCCAGGCCCCAGATGTTTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCAAGGCTATCCCACAAGCTTATCTTTCCCAGGCCCCAGATGTTTG  700

seq1  TTTACAGCAGGGCTGCAGAACCAGGAACTGTGAAGGGTGCTCTTAAGCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCAGGGCTGCAGAACCAGGAACTGTGAAGGGTGCTCTTAAGCCA  750

seq1  GAAGTCTAAAATATGGAGCAAGTGCTCATTTGAGGAATGCTTAGCCCCAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAAAATATGGAGCAAGTGCTCATTTGAGGAATGCTTAGCCCCAG  800

seq1  CTAAAAGACATAACTCCTGAGAAACTTATCTCAGAAGGAACTGAATGTAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGACATAACTCCTGAGAAACTTATCTCAGAAGGAACTGAATGTAG  850

seq1  TCAATTTGTTTGTCTGTTTTGAAAAGGAATCTATCTACAAAGCCTGGTTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGTTTGTCTGTTTTGAAAAGGAATCTATCTACAAAGCCTGGTTG  900

seq1  CTGTGGGACTCACTATGTAGACCAGGTTGGCCTTGAACTCAGAGACGCAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACTCACTATGTAGACCAGGTTGGCCTTGAACTCAGAGACGCAT  950

seq1  CTGCTTTTGCTGGGATGAAAGGTGTGCACCATACCAGCTTTATTTTAGCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTGCTGGGATGAAAGGTGTGCACCATACCAGCTTTATTTTAGCT  1000

seq1  AATTTTTAATTCAGCAAGATTCACTAGGTGAATTC  1025
      |||||||||||||||||||||||||||||||||||
seq2  AATTTTTAATTCAGCAAGATTCACTAGGTGAATTC  1035

seq1: chr3_88614614_88615498
seq2: B6Ng01-228J08.g_73_967

seq1  GAATTCCATTGCCCTTCACCAGCAGTTCAACCCCAGGTTCCAGACCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCCCTTCACCAGCAGTTCAACCCCAGGTTCCAGACCTTAT  50

seq1  TCCAGCCTTGTAACTGGATGGGAGCTATGCGGCTCATTGAAGACTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTTGTAACTGGATGGGAGCTATGCGGCTCATTGAAGACTTCACC  100

seq1  CAAGTCAGCATTGACTGCAGCCCTCATAAAACCGCCAAGAAGACTGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGCATTGACTGCAGCCCTCATAAAACCGCCAAGAAGACTGGTAG  150

seq1  GAGATGACTGTGTCAAGTCCAGGTTGAGATTGGCAGTGAAAGACTCGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTGTGTCAAGTCCAGGTTGAGATTGGCAGTGAAAGACTCGAGT  200

seq1  CTTTAATGTGTTTGCTGTGATTCTTAGGGCACAGGAGATTTGTAATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGTGTTTGCTGTGATTCTTAGGGCACAGGAGATTTGTAATTTAT  250

seq1  TCTCTCTGTCTTCTATACATTCAAGGAGACCGGGCATGTAGCTCATTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTTCTATACATTCAAGGAGACCGGGCATGTAGCTCATTGGT  300

seq1  AAAGTACTTACCTATACGGAGAGACAAATGTTCATAGTTCATTTCTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTACCTATACGGAGAGACAAATGTTCATAGTTCATTTCTAACT  350

seq1  TGAGGCTTAACTCCCACAGCACTATTACATTCAAGTTGGGAATGTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTAACTCCCACAGCACTATTACATTCAAGTTGGGAATGTCACTG  400

seq1  CTACTTTCTATATTTTTTAAAATTATATTTATCTAATTCCGCACTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTATATTTTTTAAAATTATATTTATCTAATTCCGCACTCACAC  450

seq1  ACACACACACACACACACACGCACGCACGCACACACACACGAAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACGCACGCACGCACACACACACGAAGAGAGAG  500

seq1  GAGAGGAAGGGAGCACACATACCATAGTACACCGGACAGCTTTGGCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGGGAGCACACATACCATAGTACACCGGACAGCTTTGGCTGTT  550

seq1  GTTTCTCCCTCTACCA-TGTGGGTCCCAGGAAGTAAGTTCAGGCCATCAG  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTCTCCCTCTACCATTGTGGGTCCCAGGAAGTAAGTTCAGGCCATCAG  600

seq1  CAGGCTCAGGGGCAGGTTTGTCTATTGAGACATCTCACTGGCATCCAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGGGGCAGGTTTGTCTATTGAGACATCTCACTGGCATCCAGAG  650

seq1  CGAATAACCAAAGTGTAATG--TTTTTTTATCTGGAAAGAAC-AAACGTC  696
      ||||||||||||||||||||  |||||||||||||||||||| |||||||
seq2  CGAATAACCAAAGTGTAATGTTTTTTTTTATCTGGAAAGAACAAAACGTC  700

seq1  TTGTTGAAGATC-TTTTTGTCTTGTAGAGAC--TTTTTTTTCTCGAGACA  743
      |||||||||||| |||||||| |||||||||  |||||||||||||||||
seq2  TTGTTGAAGATCTTTTTTGTC-TGTAGAGACTTTTTTTTTTCTCGAGACA  749

seq1  GGGCTTCTCTGTGTAGCCTGGGCTGTCCTGGAA-CTCACTCTGTAGACC-  791
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GGGCTTCTCTGTGTAGCCTGGGCTGTCCTGGAATCTCACTCTGTAGACCA  799

seq1  AGGCTGG-CCTCAAACTCAGAAATCCACCTG-CCTCTGCCTCCCAAGTGC  839
      ||||||| ||||||||||  || || ||||| ||||||||| ||||||||
seq2  AGGCTGGCCCTCAAACTCCAAATTCTACCTGCCCTCTGCCTTCCAAGTGC  849

seq1  AGGGACTAAAGGTGTGCGCCACCACCACCTGGCTGTAAAGAAACTG  885
      | |||||||| ||||||||||| | |||||||||||||||||||||
seq2  ATGGACTAAAAGTGTGCGCCACTATCACCTGGCTGTAAAGAAACTG  895