BAC Information

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BAC

Clone NameB6Ng01-228J22
Chromosome3 (Build37)
Map Location 28,382,155 - 28,541,940
singlet/doubletdoublet
Overlap geneTnik
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228J22.bB6Ng01-228J22.g
ACCGA041988GA041989
length913859
definitionB6Ng01-228J22.b B6Ng01-228J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,382,155 - 28,383,064)(28,541,091 - 28,541,940)
sequence
gaattcattatggacaacaaatttgaaatgttgactcagtaaggtgggcc
gtagaaacttgcttgatcttggtcttcctgtttgtactcgaatcttgtaa
ggaaagcgagcctaccaagcagttctgtttctcttctttataaaagtcaa
aaggacttgcctagagcttcattggaaaattgaaaacatcaaacttctga
aaggagtgtatgtaccctcattcctctggctcccatctattcatctccta
tggatttttcatgccttcctaatttgttttctgaattattttctcctcaa
agaaagcttttaaaatttttacagtagcagtattctgtttttggaaaaga
atccaccagcctttaaaagcatcgtgcgtcagttgctaagtattttatag
tatttataagtgtaggtgttgaatgtctatcaatgggtggtacattatta
ttaattattattagcattaaatttctattaagttcgtggcatctaataca
ggttttgttgttgttgtttgggcagattaggaatgatacttaaaaaccag
tacagttctgttacttaaataagcattggttttcttttctactatgtatg
aacgtgtgaatgcgtgcttgtgtgttaggtgctttgatgtgtgtgcacat
gtgtagaggccacaagcctcaccttaggagctgcccaccttgatgttttg
agacagagtccctcactggaacctggaactcacccactctgctgggctgg
tggccagcctgctgtgatcttctgtctcttctcctctccagcattgggat
tgccagcaggggtgagggcttgggggatggaggaaagggcttcctcttgt
ttccatgtgggtgaccttcttgacaatggcttaagcaacttgctagctcc
atcttttcacatt

gaattcccaagagaattggccatgtatactgggagatggggattaagttt
tgccagcagcccaagtagattatggtgatgatctcgtaatggaacaagaa
gagatgaggatgcaggtatgcagaaggagagagaaggggattgtggagag
acagggagggcaggaggcaagcaaagctgagggcagagtgcatgcaggag
ccaccgaagcccttgtctctctttagtttctgcttccacccctacatagg
taccccactaactgtgcctcgagttcctccatggaatatgaatataaata
gtttgtgaatttcaattcttttttttttgtgtgtgcgttatctacaagtc
cctactcccccccaaaactctgtaaaagtgtgtcctttcttttttactta
taataaaaagcttcatggtataacctagtgttattactctatggggtagg
tgggtagaaactagagaggacatgaggagcttcgggaaagcgctgctatc
cttgacagccagaaaaggcttctagaaaggaaagctgaggcagaaaagaa
tagaagggagtaaaaagcaaaatagcatttccaggagatgggacactgga
gatgagctggctggtaagacctggctggtgtggcacactctagtggactg
gaaaatggttccatggaggtgtaagataaagacaggaggacacagaagga
cagcagctagggagagcaccaaggcactaggcgtgggacagtcctaggta
gcatggtcagttagagttctttcagagctcttctttctattcttctgaag
aaataagctgaatgagtgtctgatgtcccatcctgggggaagttgagctc
actaggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28382155_28383064
seq2: B6Ng01-228J22.b_45_957

seq1  GAATTCATTATGGACAACAAATTTGAAATGTTGACTCAGTAAGGTGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGGACAACAAATTTGAAATGTTGACTCAGTAAGGTGGGCC  50

seq1  GTAGAAACTTGCTTGATCTTGGTCTTCCTGTTTGTACTCGAATCTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACTTGCTTGATCTTGGTCTTCCTGTTTGTACTCGAATCTTGTAA  100

seq1  GGAAAGCGAGCCTACCAAGCAGTTCTGTTTCTCTTCTTTATAAAAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCGAGCCTACCAAGCAGTTCTGTTTCTCTTCTTTATAAAAGTCAA  150

seq1  AAGGACTTGCCTAGAGCTTCATTGGAAAATTGAAAACATCAAACTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTGCCTAGAGCTTCATTGGAAAATTGAAAACATCAAACTTCTGA  200

seq1  AAGGAGTGTATGTACCCTCATTCCTCTGGCTCCCATCTATTCATCTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGTATGTACCCTCATTCCTCTGGCTCCCATCTATTCATCTCCTA  250

seq1  TGGATTTTTCATGCCTTCCTAATTTGTTTTCTGAATTATTTTCTCCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTCATGCCTTCCTAATTTGTTTTCTGAATTATTTTCTCCTCAA  300

seq1  AGAAAGCTTTTAAAATTTTTACAGTAGCAGTATTCTGTTTTTGGAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTTTTAAAATTTTTACAGTAGCAGTATTCTGTTTTTGGAAAAGA  350

seq1  ATCCACCAGCCTTTAAAAGCATCGTGCGTCAGTTGCTAAGTATTTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCAGCCTTTAAAAGCATCGTGCGTCAGTTGCTAAGTATTTTATAG  400

seq1  TATTTATAAGTGTAGGTGTTGAATGTCTATCAATGGGTGGTACATTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAGTGTAGGTGTTGAATGTCTATCAATGGGTGGTACATTATTA  450

seq1  TTAATTATTATTAGCATTAAATTTCTATTAAGTTCGTGGCATCTAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTATTAGCATTAAATTTCTATTAAGTTCGTGGCATCTAATACA  500

seq1  GGTTTTGTTGTTGTTGTTTGGGCAGATTAGGAATGATACTTAAAAACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTGTTGTTGTTTGGGCAGATTAGGAATGATACTTAAAAACCAG  550

seq1  TACAGTTCTGTTACTTAAATAAGCATTGGTTTTCTTTTCTACTATGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCTGTTACTTAAATAAGCATTGGTTTTCTTTTCTACTATGTATG  600

seq1  AACGTGTGAATGCGTGCTTGTGTGTTAGGTGCTTTGATGTGTGTGCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTGAATGCGTGCTTGTGTGTTAGGTGCTTTGATGTGTGTGCACAT  650

seq1  GTGTAGAGGCCACAAGCCTCACCTTAGGAGCTGCCCACCTTGATGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAGGCCACAAGCCTCACCTTAGGAGCTGCCCACCTTGATGTTTTG  700

seq1  AGACAGAGTCCCTCACTGGAACCTGGAACTCACCCACTCTGCTGGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTCCCTCACTGGAACCTGGAACTCACCCACTCTGCTGGGCTGG  750

seq1  TGGCCAGCCTGCTGTGATCTTCTGTCTCTTCTCCTCTCCAGCATTGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCCTGCTGTGATCTTCTGTCTCTTCTCCTCTCCAGCATTGGGAT  800

seq1  TGCCAGCAGGGGTGAGGGC-TGGGGGATGGAGGAAAGGGC-TCCTCGTGG  848
      ||||||||||||||||||| |||||||||||||||||||| ||||| || 
seq2  TGCCAGCAGGGGTGAGGGCTTGGGGGATGGAGGAAAGGGCTTCCTCTTGT  850

seq1  TTCCATGTGGGTGACCTTCCTGACTATGGCTTAAGC-ACTTGCTAGCTCC  897
      ||||||||||||||||||| |||| ||||||||||| |||||||||||||
seq2  TTCCATGTGGGTGACCTTCTTGACAATGGCTTAAGCAACTTGCTAGCTCC  900

seq1  ATCTTTTCACATT  910
      |||||||||||||
seq2  ATCTTTTCACATT  913


seq1: chr3_28541091_28541940
seq2: B6Ng01-228J22.g_71_929 (reverse)

seq1  GATCCT-GTGAGCTC-ACTT-CCACAGGAT-GGACATCAGACACTCATTC  46
      |||||| |||||||| |||| || |||||| |||||||||||||||||||
seq2  GATCCTAGTGAGCTCAACTTCCCCCAGGATGGGACATCAGACACTCATTC  50

seq1  AGCTTA-TTCTTCAG-AGAATAGAAAGAAGAGCTCTGAAAG-ACTCT-AC  92
      |||||| |||||||| ||||||||||||||||||||||||| ||||| ||
seq2  AGCTTATTTCTTCAGAAGAATAGAAAGAAGAGCTCTGAAAGAACTCTAAC  100

seq1  TGGCCATGCTACCTAGGACTGTCCCACGCCTAGTGCCTTGGTGCTCTCCC  142
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGCTACCTAGGACTGTCCCACGCCTAGTGCCTTGGTGCTCTCCC  150

seq1  TAGCTGCTGTCCTTCTGTGTCCTCCTGTC-TTATCTTACACCTCCATGGA  191
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGCTGCTGTCCTTCTGTGTCCTCCTGTCTTTATCTTACACCTCCATGGA  200

seq1  ACCATTTTCCAGTCCACTAGAGTGTGCCACACCAGCCAGGTCTTACCAGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTCCAGTCCACTAGAGTGTGCCACACCAGCCAGGTCTTACCAGC  250

seq1  CAGCTCATCTCCAGTGTCCCATCTCCTGGAAATGCTATTTTGCTTTTTAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATCTCCAGTGTCCCATCTCCTGGAAATGCTATTTTGCTTTTTAC  300

seq1  TCCCTTCTATTCTTTTCTGCCTCAGCTTTCCTTTCTAGAAGCCTTTTCTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTATTCTTTTCTGCCTCAGCTTTCCTTTCTAGAAGCCTTTTCTG  350

seq1  GCTGTCAAGGATAGCAGCGCTTTCCCGAAGCTCCTCATGTCCTCTCTAGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAAGGATAGCAGCGCTTTCCCGAAGCTCCTCATGTCCTCTCTAGT  400

seq1  TTCTACCCACCTACCCCATAGAGTAATAACACTAGGTTATACCATGAAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCACCTACCCCATAGAGTAATAACACTAGGTTATACCATGAAGC  450

seq1  TTTTTATTATAAGTAAAAAAGAAAGGACACACTTTTACAGAGTTTTGGGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTATAAGTAAAAAAGAAAGGACACACTTTTACAGAGTTTTGGGG  500

seq1  GGGAGTAGGGACTTGTAGATAACGCACACACAAAAAAAAAAGAATTGAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAGGGACTTGTAGATAACGCACACACAAAAAAAAAAGAATTGAAA  550

seq1  TTCACAAACTATTTATATTCATATTCCATGGAGGAACTCGAGGCACAGTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAACTATTTATATTCATATTCCATGGAGGAACTCGAGGCACAGTT  600

seq1  AGTGGGGTACCTATGTAGGGGTGGAAGCAGAAACTAAAGAGAGACAAGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTACCTATGTAGGGGTGGAAGCAGAAACTAAAGAGAGACAAGGG  650

seq1  CTTCGGTGGCTCCTGCATGCACTCTGCCCTCAGCTTTGCTTGCCTCCTGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTGGCTCCTGCATGCACTCTGCCCTCAGCTTTGCTTGCCTCCTGC  700

seq1  CCTCCCTGTCTCTCCACAATCCCCTTCTCTCTCCTTCTGCATACCTGCAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTCTCTCCACAATCCCCTTCTCTCTCCTTCTGCATACCTGCAT  750

seq1  CCTCATCTCTTCTTGTTCCATTACGAGATCATCACCATAATCTACTTGGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTCTTCTTGTTCCATTACGAGATCATCACCATAATCTACTTGGG  800

seq1  CTGCTGGCAAAACTTAATCCCCATCTCCCAGTATACATGGCCAATTCTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCAAAACTTAATCCCCATCTCCCAGTATACATGGCCAATTCTCT  850

seq1  TGGGAATTC  850
      |||||||||
seq2  TGGGAATTC  859


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