BAC Information

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BAC

Clone NameB6Ng01-229G06
Chromosome3 (Build37)
Map Location 5,477,634 - 5,478,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620283, Zfhx4
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229G06.bB6Ng01-229G06.g
ACCGA042553GA042554
length1,1001,147
definitionB6Ng01-229G06.b B6Ng01-229G06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagatctgtaccccatttttaatagggttatttgattt
tctggagtccatcttcttgagttatttatatatattggatacccccccca
atctaatttaggattgtaaagatcctttccaaatctcttggtggcctttt
tgtcttattgacagtgtcttttgccttacagaagcattgcaattttatga
ggtcccatttgtcaattctcaatcttacagcacaagccattgccattttc
atcaggctgttttcccctgtgcccacatcttcgatgcttttccccacttt
ctcctctataagtttcagtgtctctgtttttatgtggcgatccttgatct
atgtagacttgagctttgtacaaggagataagaatggatcaattcatatt
cttctacatgataaccgccagttgtgccagcaccatttgatgaaaatgct
gtcttttttccactggatgattttagctcccttgtcaaagaccaagtgac
cttacgtgtgtgggttcatttctgggtcttcgattctatcccattgatct
acctgtctgtcactgtaccagtatcatgcagattttatcccaattgctct
gtagtccagcttgaggtcaggcatggtgattccaccagaggttcttttat
cattgagaagagtttttgctatcctaggttttttgttattccagatgaat
ttgaagattgccctttctaattccttgaagaattgagttggaattttgtt
ggggattgcatgaaagccatttttagtatactgatcttgacaatccatga
gcatgggagatctttccatcttctgagatcttctttaatttctttctcaa
gagacttaaagttcttatcatacagatctttcactttccttagttagagt
ccacatcaaaggtattttatattatttgtgactattgtgaagggtgttgt
ttccctaatttctttctcagcctgtttatctttgggtgtaggagaaaggc
cattgatttgtttggagataattttatattcagctacttcactgaagctg
ttttttcaggttaaggtggttctctctgctggaaatttctaggatcacct

gaattccatgtccctgttattagcaagactttcttctaatcccccgtgaa
attctcagagaacatggaccaatgtgcagagcagaaacctgaacaataac
agcttatgtctgtatcaacatcctgccttagatgtctgctccttattact
accaggggagattgcatttggtaaaacaaaacaaaaattgtttgtttgtt
tgtttgttttaaatttgatttaactaacccacagaagacaaaatgggata
ttacactttaggactacttaataaacactagagtgttatgtataagtaac
tagcaaatatttcttttggagcaataaaaacattttgaaatataactgct
tttcagaagtagaatctttctttcttgatatagctaacatggcaatgaca
ctaagagtgacattgtctttgccacagccatgtctgatcataagtaggca
ggaacatagtgtaaatttttcttcctgaaactgttttgttttaaaagcta
gaccacagacaactgatgcttaaacgaaaatgctatgtatagatggatta
ctaatggtggcaggtgatatcagccacgctgataaaataaataaataaat
aaataaataaataaataaataacaaccctacaaattttctcagcaaatta
aaagtagatttttcttagtctgaaaagttacatgtccaaaatcttaaagc
taataagtgtaacattttacctctaaaaataaggataagataaacatacc
ttttctcattatttgattagtcactatgatggactagtcaacaaaggcaa
caaataagaataaaaaatgtataaaaccggatggacctggagggcatcat
cctgagtgaggtaacccagtcacaaaggaactcacacaatatgtactcac
tgataagtggattattagcccagaaacttaggaatacccaagatacagat
acattttgctaacgcatgaaactcaagaagaacgaagatcaaagtgtgga
cacttttgctccttctagattgagaacaaaacaacccatgaaggagttac
agaagacaagtttggagctgtgacttaaggatagacatctaagacttgcc
atatcttgggatcatctcatatcagctcgaagctgaaccattgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5477634_5478787
seq2: B6Ng01-229G06.g_67_1213

seq1  GAATTCCATGTCCCTGTTATTAGCAAGACTTTCTTCTAATCCCCCGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCCCTGTTATTAGCAAGACTTTCTTCTAATCCCCCGTGAA  50

seq1  ATTCTCAGAGAACATGGACCAATGTGCAGAGCAGAAACCTGAACAATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGAGAACATGGACCAATGTGCAGAGCAGAAACCTGAACAATAAC  100

seq1  AGCTTATGTCTGTATCAACATCCTGCCTTAGATGTCTGCTCCTTATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATGTCTGTATCAACATCCTGCCTTAGATGTCTGCTCCTTATTACT  150

seq1  ACCAGGGGAGATTGCATTTGGTAAAACAAAACAAAAATTGTTTGTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGAGATTGCATTTGGTAAAACAAAACAAAAATTGTTTGTTTGTT  200

seq1  TGTTTGTTTTAAATTTGATTTAACTAACCCACAGAAGACAAAATGGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTAAATTTGATTTAACTAACCCACAGAAGACAAAATGGGATA  250

seq1  TTACACTTTAGGACTACTTAATAAACACTAGAGTGTTATGTATAAGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTAGGACTACTTAATAAACACTAGAGTGTTATGTATAAGTAAC  300

seq1  TAGCAAATATTTCTTTTGGAGCAATAAAAACATTTTGAAATATAACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATATTTCTTTTGGAGCAATAAAAACATTTTGAAATATAACTGCT  350

seq1  TTTCAGAAGTAGAATCTTTCTTTCTTGATATAGCTAACATGGCAATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGTAGAATCTTTCTTTCTTGATATAGCTAACATGGCAATGACA  400

seq1  CTAAGAGTGACATTGTCTTTGCCACAGCCATGTCTGATCATAAGTAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTGACATTGTCTTTGCCACAGCCATGTCTGATCATAAGTAGGCA  450

seq1  GGAACATAGTGTAAATTTTTCTTCCTGAAACTGTTTTGTTTTAAAAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAGTGTAAATTTTTCTTCCTGAAACTGTTTTGTTTTAAAAGCTA  500

seq1  GACCACAGACAACTGATGCTTAAACGAAAATGCTATGTATAGATGGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGACAACTGATGCTTAAACGAAAATGCTATGTATAGATGGATTA  550

seq1  CTAATGGTGGCAGGTGATATCAGCCACGCTGATAAAATAAATAAATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGTGGCAGGTGATATCAGCCACGCTGATAAAATAAATAAATAAAT  600

seq1  AAATAAATAAATAAATAAATAACAACCCTACAAATTTTCTCAGCAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAACAACCCTACAAATTTTCTCAGCAAATTA  650

seq1  AAAGTAGATTTTTCTTAGTCTGAAAAGTTACATGTCCAAAATCTTAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGATTTTTCTTAGTCTGAAAAGTTACATGTCCAAAATCTTAAAGC  700

seq1  TAATAAGTGTAACATTTTACCTCTAAAAATAAGGATAAGATAAACATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTGTAACATTTTACCTCTAAAAATAAGGATAAGATAAACATACC  750

seq1  TTTTCTCATTATTTGATTAGTCACTATGATGGACTAGTCAAC-AAGGCAA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTCTCATTATTTGATTAGTCACTATGATGGACTAGTCAACAAAGGCAA  800

seq1  CAAATAAGAATAAAAAATGTATAAAACCGGATGGACCTGGAGGGCATCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGAATAAAAAATGTATAAAACCGGATGGACCTGGAGGGCATCAT  850

seq1  CCTGAGTGAGGTAACCCAGTCACAAAGGAACTCACACAATATGTACTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGAGGTAACCCAGTCACAAAGGAACTCACACAATATGTACTCAC  900

seq1  TGATAAGTGGA-TATTAGCCCAGAAACTTAGG-ATACCCAAGATACAAGA  947
      ||||||||||| |||||||||||||||||||| ||||||||||||| |||
seq2  TGATAAGTGGATTATTAGCCCAGAAACTTAGGAATACCCAAGATAC-AGA  949

seq1  TACAATTTGCTAAACGCATGAAACTCAAGAAGAACGAAGATCAAAGTGTG  997
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGCT-AACGCATGAAACTCAAGAAGAACGAAGATCAAAGTGTG  998

seq1  GACAC-TTTGCTCCTTCTTAGAATTGAGAACAAAAC-ACCCATGGAAGGA  1045
      ||||| ||||||||||| ||| |||||||||||||| |||||| ||||||
seq2  GACACTTTTGCTCCTTC-TAG-ATTGAGAACAAAACAACCCAT-GAAGGA  1045

seq1  GTTACAG-AGACAAAGTTTGGAGCTGTGACTAAAGGATAGACCATCTAGA  1094
      ||||||| |||| |||||||||||||||||| ||||||||| |||||| |
seq2  GTTACAGAAGAC-AAGTTTGGAGCTGTGACTTAAGGATAGA-CATCTA-A  1092

seq1  GAC-TGCCATATCTGGGGATCCATCTCATAATCAGCTTCCAAAAGCTGAC  1143
      ||| |||||||||| ||||| |||||||| |||||||     ||||||| 
seq2  GACTTGCCATATCTTGGGAT-CATCTCAT-ATCAGCT---CGAAGCTGA-  1136

seq1  ACCATTGCATA  1154
      |||||||||||
seq2  ACCATTGCATA  1147