BAC Information

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BAC

Clone NameB6Ng01-229H21
Chromosome3 (Build37)
Map Location 45,758,211 - 45,759,383
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229H21.bB6Ng01-229H21.g
ACCGA042620GA042621
length1,1621,197
definitionB6Ng01-229H21.b B6Ng01-229H21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacataattaaatctaataaatttctttaaaaacttgtctttaag
taactgttgacatattaaaactaactatgctaaatgccatcgtatctcta
atggctaaattacattttggtcctattttatattgaaatatgaggccttc
acattggcaagtatttaatgtgctggatatatttgtcactaagaatgtag
catttcaatatctgaacatttaccttttatctaggtgaaatataagtttt
tatatggtgtaatttttaaaatagtttaattattttgcttataattattt
taatcagaagtaatcaaattaatttgagactaaggtttaggctgtatatg
catgtagacactaaaaagacactgcagccagtaaaataactagcaacttt
taagtaatcttgctccagtcctaccactggtttcctcatccattagatca
catgattaaaatcgctagacatttcttactgaacatcttcaactaacaag
cttagttgttgcactgtttgaaagctagtttgttaattagtcttcaaatt
tttgattgcggggtgctggagacatgatacagaggccacggaggaatact
gagtactggcttgctccctcatgtcttgcatatcctgctttctctgaact
cccaggacaacctgcccagaggtttgaccacatacaatgggtctcccagt
taattactgattaggaaattgcactacagacttgcctacagacctgactg
atagaggaaatttgtcaatttataattcgttgtcccaaatgattctaggt
tgtgtcaaggtaagatcaaccagctaaagatatcatcttacaattatatt
aaaaaatgcgtaatttctagcttttacataatttttttcataacatttta
acattgctatagaaaaagtaggaaaaaaactaggactctttctctccatg
gactcatgaatatgtaaacaaatccatttttttcttatcatctctgacta
acttatttactaccacagagaagcagcagaatttcctaaatagttttatt
agtcatctagggagaaacttcatataaccattttctgaacactggatgcc
tagagacctctatatagaaagatattgcttagttcatgatcatgagatac
acactaaccttt
gaattcacaaccaaacagctacactgggtgctattaccatctgcagcatc
agaatcaggaaatccagtgctttcttctggtctccacaggtgtctgaagt
cacacatacacaaatacacaaagacgcatacaaacatacatacacaccta
cacactcacagtccccagaggactttccatgctaaggatcactggtaagt
ggaaaggaacataggttccaagccaatcataatgggactttgacagcagg
accaaggacacaggagcagttcaggttccttctggttggtgctggtatag
ctaggtttcaaacacagcagacagccccatggagctcagaggagatacca
cttccacgcccaggatcttaggattccaggatcccaggatcccaggagct
tggtcacaccaggatcttagggtctcagagaaagttagactgccaagaat
tctgacacacccagaatctcaggttcacagaatactggaagaaggacagg
ctccaatcagatatattgagggcagtaagcacttgagataatcagatggc
agggggcaagcataagaacagaagcaacagaaatccaggttacatggcat
caccagaacaaaactctcctaccatagcaagtcctggatacaccatcaca
ccagaaaagaaagatatggatctaaattcacttctcatgatgatgatgga
ggactttaagaaggaaataaataactcgcttaaagaaatacagcagaaca
tatacaatcaggagaaagaattaacaaaactatccagaatctaaaaatgg
aagtagaaacaataaagaaatcacaaagggagagcactctgaaaatagaa
aacctagaaaaaaagtcaggagccaatgatgcaaggataactaacaaaat
acaagagaaaagagaatctcagtgcagaagatatcatagaaaagacccat
ggaggagttacagagacaaagtttgagctgaagacaaaagatgaccacct
agagactgcatactggggatcatctgataatcagcctccaaaagctgcac
attgcatacacacaaaattttgctgaagacctgtattagcttgtctcctt
gtgagttatgccaaggctgcaaacacagattgaatgctcacaggtcctgt
ctattggaagtggaaccaggacccccaattgggtaggagtccttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45758211_45759383
seq2: B6Ng01-229H21.b_42_1203

seq1  GAATTCACATAATTAAATCTAATAAATTTCTTTAAAAACTTGTCTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAATTAAATCTAATAAATTTCTTTAAAAACTTGTCTTTAAG  50

seq1  TAACTGTTGACATATTAAAACTAACTATGCTAAATGCCATCGTATCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTGACATATTAAAACTAACTATGCTAAATGCCATCGTATCTCTA  100

seq1  ATGGCTAAATTACATTTTGGTCCTATTTTATATTGAAATATGAGGCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAATTACATTTTGGTCCTATTTTATATTGAAATATGAGGCCTTC  150

seq1  ACATTGGCAAGTATTTAATGTGCTGGATATATTTGTCACTAAGAATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGCAAGTATTTAATGTGCTGGATATATTTGTCACTAAGAATGTAG  200

seq1  CATTTCAATATCTGAACATTTACCTTTTATCTAGGTGAAATATAAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATATCTGAACATTTACCTTTTATCTAGGTGAAATATAAGTTTT  250

seq1  TATATGGTGTAATTTTTAAAATAGTTTAATTATTTTGCTTATAATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTGTAATTTTTAAAATAGTTTAATTATTTTGCTTATAATTATTT  300

seq1  TAATCAGAAGTAATCAAATTAATTTGAGACTAAGGTTTAGGCTGTATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAAGTAATCAAATTAATTTGAGACTAAGGTTTAGGCTGTATATG  350

seq1  CATGTAGACACTAAAAAGACACTGCAGCCAGTAAAATAACTAGCAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGACACTAAAAAGACACTGCAGCCAGTAAAATAACTAGCAACTTT  400

seq1  TAAGTAATCTTGCTCCAGTCCTACCACTGGTTTCCTCATCCATTAGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATCTTGCTCCAGTCCTACCACTGGTTTCCTCATCCATTAGATCA  450

seq1  CATGATTAAAATCGCTAGACATTTCTTACTGAACATCTTCAACTAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTAAAATCGCTAGACATTTCTTACTGAACATCTTCAACTAACAAG  500

seq1  CTTAGTTGTTGCACTGTTTGAAAGCTAGTTTGTTAATTAGTCTTCAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTGTTGCACTGTTTGAAAGCTAGTTTGTTAATTAGTCTTCAAATT  550

seq1  TTTGATTGCGGGGTGCTGGAGACATGATACAGAGGCCACGGAGGAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGCGGGGTGCTGGAGACATGATACAGAGGCCACGGAGGAATACT  600

seq1  GAGTACTGGCTTGCTCCCTCATGTCTTGCATATCCTGCTTTCTCTGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGGCTTGCTCCCTCATGTCTTGCATATCCTGCTTTCTCTGAACT  650

seq1  CCCAGGACAACCTGCCCAGAGGTTTGACCACATACAATGGGTCTCCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACAACCTGCCCAGAGGTTTGACCACATACAATGGGTCTCCCAGT  700

seq1  TAATTACTGATTAGGAAATTGCACTACAGACTTGCCTACAGACCTGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTGATTAGGAAATTGCACTACAGACTTGCCTACAGACCTGACTG  750

seq1  ATAGAGGAAATTTGTCAATTTATAATTCGTTGTCCCAAATGATTCTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAAATTTGTCAATTTATAATTCGTTGTCCCAAATGATTCTAGGT  800

seq1  TGTGTCAAGGTAAGATCAACCAGCTAAAGATATCATCTTACAATTATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAGGTAAGATCAACCAGCTAAAGATATCATCTTACAATTATATT  850

seq1  AAAAAATGCGTAATTTCTAGCTTTTACATAATTTTTTTCATAACATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCGTAATTTCTAGCTTTTACATAATTTTTTTCATAACATTTTA  900

seq1  ACATTGCTATAGAAAAAGTAGGAAAAAAACTAGGACTCTTTCTCTCCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTATAGAAAAAGTAGGAAAAAAACTAGGACTCTTTCTCTCCATG  950

seq1  GACTCATGAATATGTAAACAAATCCATTTTTTTCTTTATCAATCTCTGAA  1000
      |||||||||||||||||||||||||||||||||| ||||| |||||||| 
seq2  GACTCATGAATATGTAAACAAATCCATTTTTTTC-TTATC-ATCTCTGA-  997

seq1  CCTTAACTTATTTTACTA-CACAGAGAAAGCAAGCAGAAATTCCTAAATA  1049
         ||||||| ||||||| ||||||| |||| ||||||| ||||||||||
seq2  --CTAACTTA-TTTACTACCACAGAG-AAGC-AGCAGAATTTCCTAAATA  1042

seq1  GTTTTAATAAGTCATCTAGGGAAGGAAAC-TCATAT-ACCATTTTCTGAA  1097
      ||||| || |||||||||||||  ||||| |||||| |||||||||||||
seq2  GTTTT-ATTAGTCATCTAGGGA--GAAACTTCATATAACCATTTTCTGAA  1089

seq1  CACTGGGATG-CTAGAGAACTCTAATAATAG-AAGATATTGCTTAGTTCA  1145
      |||| ||||| ||||||| |||||   |||| ||||||||||||||||||
seq2  CACT-GGATGCCTAGAGACCTCTA--TATAGAAAGATATTGCTTAGTTCA  1136

seq1  TTGATCAATGAGTAACACACTAATCTTT  1173
       ||||| |||||  ||||||||| ||||
seq2  -TGATC-ATGAGATACACACTAACCTTT  1162