BAC Information

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BAC

Clone NameB6Ng01-229H23
Chromosome3 (Build37)3 (Build37)
Map Location 45,387,206 - 45,387,74633,377,531 - 33,378,651
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229H23.bB6Ng01-229H23.g
ACCGA042624GA042625
length9681,116
definitionB6Ng01-229H23.b B6Ng01-229H23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,387,206 - 45,387,746)(33,377,531 - 33,378,651)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcaggttttaccacaaatgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccagtt
ttacaatgtgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttatttcttccttcagagacttgaagtttttatcataca
gatctttcacttccttagttagagtcactccgagatatttatattatttt
gactattgagaagggtgt

gaattcttttatgtcaactcctattttcatttgacatgaccccattttta
attcatataaacttatatattacatttgtagatgaaacataagcatttaa
tcatttaagtaaatttagattactccatgccccaaatacctagcattttt
catatgtcacttttgtatacgagacttgtaaaatcattaaagctagaata
ttctcttgagcggatcattcttaaaaggagattttctctataagaagaaa
accaagggagaaatctccaactaacacagacataggagctgttgagctga
gggagcaataaagtcatagtgcttcataacattcctaccgatcttgtttg
aaacatcccaacaaatacttgggtctcattaaaactttataatgcagtgg
ttctcagtcttcctaacctaacagtcctctaataaagatcatgttgtggt
gactcaaagccataaaattattttcttgctactttatgactataattttg
acaccattatgaattgtaatgtaaatgtttgatatgccagatatctaatt
gatatttgacccccaaagtgcttgacccatagatagagaaccactgcttt
aataaatgttctcaggacattttttaattgtagctctattccacatgaga
gtttaaatgcaaattagagaaagagaaggtgtctcctttcaagtcctagg
gtcacactatagaaaaagtgtcatccatcagttttctctttatagctata
actggtttgttaacatcttttgggattttgtattcccatttcttagtttt
tttcaatctatattaattaaaatatgattacatatttttctcctattgcg
tcccactcgaccggcaagaaagacgcaaccactggaatctttctgcggca
aaagcttttattgcttacttctcagagaccccgaaccgggaaatggtgct
gcttatatagcgcagcgtgatgtttcagcactgatatggcgtgaacagct
ctgatcgtgctcgccatcaccccactatacgctcgagaggtgagcagtga
ctaggagtggagtcactctcgccacctgcatacaaggccttggtttacta
gtaagcacaggctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45387206_45387746
seq2: B6Ng01-229H23.b_477_1013 (reverse)

seq1  ACACCCTTCTCAATAGCCACAAATAATATAAAATATCTCGGCGTGACTCT  50
      |||||||||||||||| || ||||||||| ||||||||||| ||||||||
seq2  ACACCCTTCTCAATAGTCA-AAATAATAT-AAATATCTCGGAGTGACTCT  48

seq1  AACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGA  100
      ||| |||||||||||||||||||||||||||||||||||||| |||||| 
seq2  AACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGG  98

seq1  AAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGG  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAA-TAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGG  147

seq1  ATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTA  200
      |||||||||| | ||||||||||| |||||||||||||||||||||||||
seq2  ATTGGCAGGATC-ACATTGTAAAACTGGCTATCTTGCCAAAAGCAATCTA  196

seq1  CAGATTCAATGCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAAC  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  CAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAAT  246

seq1  TAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATA  296

seq1  GCAAAAACTCTTCTCAAGGATAAAAGAACTTCTGGTGGAATCACCATGCC  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCC  346

seq1  TGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACT  400
      ||||||||||||||||||||||||| ||||| ||||| ||||||||||||
seq2  TGACCTAAAGCTTTACTACAGAGCATTTGTGGTAAAACCTGCATGGTACT  396

seq1  GGTATAGAGACAGACAAGTGGACCAATGGAATAGAATTGAAGACCCAGAA  450
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAA  446

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCCAAAAC  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  496

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCT  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCT  537


seq1: chr3_33377531_33378651
seq2: B6Ng01-229H23.g_65_1180

seq1  GAATTCTTTTATGTCAACTCCTATTTTCATTTGACATGACCCCATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATGTCAACTCCTATTTTCATTTGACATGACCCCATTTTTA  50

seq1  ATTCATATAAACTTATATATTACATTTGTAGATGAAACATAAGCATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATAAACTTATATATTACATTTGTAGATGAAACATAAGCATTTAA  100

seq1  TCATTTAAGTAAATTTAGATTACTCCATGCCCCAAATACCTAGCATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGTAAATTTAGATTACTCCATGCCCCAAATACCTAGCATTTTT  150

seq1  CATATGTCACTTTTGTATACGAGACTTGTAAAATCATTAAAGCTAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCACTTTTGTATACGAGACTTGTAAAATCATTAAAGCTAGAATA  200

seq1  TTCTCTTGAGCGGATCATTCTTAAAAGGAGATTTTCTCTATAAGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGAGCGGATCATTCTTAAAAGGAGATTTTCTCTATAAGAAGAAA  250

seq1  ACCAAGGGAGAAATCTCCAACTAACACAGACATAGGAGCTGTTGAGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGAGAAATCTCCAACTAACACAGACATAGGAGCTGTTGAGCTGA  300

seq1  GGGAGCAATAAAGTCATAGTGCTTCATAACATTCCTACCGATCTTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAATAAAGTCATAGTGCTTCATAACATTCCTACCGATCTTGTTTG  350

seq1  AAACATCCCAACAAATACTTGGGTCTCATTAAAACTTTATAATGCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCCAACAAATACTTGGGTCTCATTAAAACTTTATAATGCAGTGG  400

seq1  TTCTCAGTCTTCCTAACCTAACAGTCCTCTAATAAAGATCATGTTGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCTTCCTAACCTAACAGTCCTCTAATAAAGATCATGTTGTGGT  450

seq1  GACTCAAAGCCATAAAATTATTTTCTTGCTACTTTATGACTATAATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAGCCATAAAATTATTTTCTTGCTACTTTATGACTATAATTTTG  500

seq1  ACACCATTATGAATTGTAATGTAAATGTTTGATATGCCAGATATCTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTATGAATTGTAATGTAAATGTTTGATATGCCAGATATCTAATT  550

seq1  GATATTTGACCCCCAAAGTGCTTGACCCATAGATAGAGAACCACTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGACCCCCAAAGTGCTTGACCCATAGATAGAGAACCACTGCTTT  600

seq1  AATAAATGTTCTCAGGACATTTTTTAATTGTAGCTCTATTCCACATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTTCTCAGGACATTTTTTAATTGTAGCTCTATTCCACATGAGA  650

seq1  GTTTAAATGCAAATTAGAGAAAGAGAAGGTGTCTCCTTTCAAGTCCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATGCAAATTAGAGAAAGAGAAGGTGTCTCCTTTCAAGTCCTAGG  700

seq1  GTCACACTATAGAAAAAGTGTCATCCATCAGGTTTTCTCTTTATAGCTAT  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCACACTATAGAAAAAGTGTCATCCATCA-GTTTTCTCTTTATAGCTAT  749

seq1  AACTGGTTTGTTAACATCTTTTGGGATTTTGTATTCCCATTTCTTAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTGTTAACATCTTTTGGGATTTTGTATTCCCATTTCTTAGTTT  799

seq1  TTTTCAATCTATATTAATTAAAATATGATTACATATTTTTCTCCTATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATCTATATTAATTAAAATATGATTACATATTTTTCTCCTATTGC  849

seq1  GTCCCACTCGACCGGCAAGAAAGACGCAACCACTGGAATC-TTCTGCGGC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCCCACTCGACCGGCAAGAAAGACGCAACCACTGGAATCTTTCTGCGGC  899

seq1  AAAAGC-TTTATTGCTTACTTCTCAGGAAGACCCCGAACCGGGAAAATGG  948
      |||||| |||||||||||||||||||  ||||||||||||||| ||||||
seq2  AAAAGCTTTTATTGCTTACTTCTCAG--AGACCCCGAACCGGG-AAATGG  946

seq1  TGCTGCTTATATAGCCGGCAGCGTGATGTTTCAGCACCTGATATGGCGTG  998
      |||||||||||||||  ||||||||||||||||||| |||||||||||||
seq2  TGCTGCTTATATAGC--GCAGCGTGATGTTTCAGCA-CTGATATGGCGTG  993

seq1  -ACAGCTCCTGATTCGTTGCTCGCCCATCACCCCACTATTACGCTCGAGA  1047
       |||||| |||| ||| |||||| |||||||||||||| |||||||||||
seq2  AACAGCT-CTGA-TCG-TGCTCG-CCATCACCCCACTA-TACGCTCGAGA  1038

seq1  -GTGAGCAGTGACTAGGAGTGAGTTCACTCTCG-CACCTGCATACAAGGC  1095
       ||||||||||||||||||||   ||||||||| ||||||||||||||||
seq2  GGTGAGCAGTGACTAGGAGTGGAGTCACTCTCGCCACCTGCATACAAGGC  1088

seq1  --TTGTTTACTAGTTAGGCACA-GCTGAG  1121
        | ||||||||| || ||||| ||||||
seq2  CTTGGTTTACTAG-TAAGCACAGGCTGAG  1116


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