BAC Information

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BAC

Clone NameB6Ng01-229J13
Chromosome3 (Build37)
Map Location 80,481,278 - 80,654,659
singlet/doubletdoublet
Overlap geneGria2, Glrb
Upstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneEG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229J13.bB6Ng01-229J13.g
ACCGA042693GA042694
length7801,064
definitionB6Ng01-229J13.b B6Ng01-229J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,653,880 - 80,654,659)(80,481,278 - 80,482,349)
sequence
gaattcctaggaagacctaataccttaaattttttgaaaactctcaactg
agtttaaaaataacggctttactttctcatcattgaacagagagatattt
caagagtttttacctcagtatataaatgttagtaagaagccgagggactt
agggtttgcgcagaccttcagccagctctgaggctaggagagccatgctg
ttgttggacagtcattttcccgttcctactgtgttaaggagcttccaatg
gtttgtcagcagatcacttaccaactggatggctggcccacagacacgct
caccacacaggtaaggatctctctagcctatccatcatagccagagaagg
cccgaatgccctttctgccgttggcccttccttgccatgtatctttgact
taaaaatagattcaagtaattggtttcagaacaacctgctgcttagcaga
ttaaagttacctgtgcacttactcagagagtcatgcttgatgttcactgt
taggaaagaaaagtcatccagaagactgtttctacagagctaagggttat
aaactctccaggagaccaatagacctatccacatccatggacactgggcc
taccttgaccgtgttctggccctatgggtctctgtgtgttttccaacccc
caactgccctcttacaaggaattctagaaaatatgctacatatagaattt
ttagacagaagaacaaactgatttttcctatgttgctatcctgaggctgg
tgtatgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcagattccctactataagcatggataattaatttcatccataaat
gaatggatagataaatagtgccattcatcacttaacagctaaaatttaat
tttattcttagagtgcagttaaattatacttgagtagttagtagtttggt
ctcagaatcttagaccaaatatgtgagatacctcttgacttttgcatatg
gttttttttttttttttgcctcagatcttcctttttaatgataaaatcta
aaaatagttgacagagctgggtcatcagtgaaggacttagaggagggctt
atgaaatagagttcagaacatgaggaatgccaaagccatcctgatatagt
tcctgtctcaagctttctctaggtgtctctcatagaacatactgtattca
aatttgtctttgatataattagttggaaaatagcagaaatgatctttact
caacagaacttgattgagatactttccagttcccaaagaaggcaaaggcc
agatgcagtggcctacatttgttatcatttgggcattcaaatacctaaaa
caggaagatgaatgtgaggccagcctgagacttacactgaattttaagtt
ttaaggatgcctcatcagcatatgtatgccatttcaaaagtgtgataaga
agtctccatccctagacagagctgcagacaaccattggcttctggaggag
aattagccttttgcaaggatggactccctaattgtttgtcaaaggcaaag
tgttcagctttgaaaccatatacacacaaagaacaaatatggattcagta
tcaaagctgtgaccgtgcatgcccagaattccagaactcaggaaacagag
gcaggcagatctctctgtgtccaaggatatcctggctacagagttaggtc
caggacagccaaaactacacaaagaaacttagtctgaataaacaaataat
taataataacataaatattcaaaatggactaagttctatatgtattttct
gtatcatctagacataacatatgtgtgtgtgtgtgtgtgtgtgtgtaaca
aatataatcaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80653880_80654659
seq2: B6Ng01-229J13.b_42_821 (reverse)

seq1  CACACACACACACACACACACACACATACACCAGCCTCAGGATAGCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATACACCAGCCTCAGGATAGCAACA  50

seq1  TAGGAAAAATCAGTTTGTTCTTCTGTCTAAAAATTCTATATGTAGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAAATCAGTTTGTTCTTCTGTCTAAAAATTCTATATGTAGCATAT  100

seq1  TTTCTAGAATTCCTTGTAAGAGGGCAGTTGGGGGTTGGAAAACACACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAATTCCTTGTAAGAGGGCAGTTGGGGGTTGGAAAACACACAGA  150

seq1  GACCCATAGGGCCAGAACACGGTCAAGGTAGGCCCAGTGTCCATGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATAGGGCCAGAACACGGTCAAGGTAGGCCCAGTGTCCATGGATGT  200

seq1  GGATAGGTCTATTGGTCTCCTGGAGAGTTTATAACCCTTAGCTCTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGTCTATTGGTCTCCTGGAGAGTTTATAACCCTTAGCTCTGTAGA  250

seq1  AACAGTCTTCTGGATGACTTTTCTTTCCTAACAGTGAACATCAAGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTTCTGGATGACTTTTCTTTCCTAACAGTGAACATCAAGCATGA  300

seq1  CTCTCTGAGTAAGTGCACAGGTAACTTTAATCTGCTAAGCAGCAGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGTAAGTGCACAGGTAACTTTAATCTGCTAAGCAGCAGGTTGT  350

seq1  TCTGAAACCAATTACTTGAATCTATTTTTAAGTCAAAGATACATGGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACCAATTACTTGAATCTATTTTTAAGTCAAAGATACATGGCAAG  400

seq1  GAAGGGCCAACGGCAGAAAGGGCATTCGGGCCTTCTCTGGCTATGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCAACGGCAGAAAGGGCATTCGGGCCTTCTCTGGCTATGATGGA  450

seq1  TAGGCTAGAGAGATCCTTACCTGTGTGGTGAGCGTGTCTGTGGGCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAGAGAGATCCTTACCTGTGTGGTGAGCGTGTCTGTGGGCCAGCC  500

seq1  ATCCAGTTGGTAAGTGATCTGCTGACAAACCATTGGAAGCTCCTTAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTTGGTAAGTGATCTGCTGACAAACCATTGGAAGCTCCTTAACAC  550

seq1  AGTAGGAACGGGAAAATGACTGTCCAACAACAGCATGGCTCTCCTAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAACGGGAAAATGACTGTCCAACAACAGCATGGCTCTCCTAGCCT  600

seq1  CAGAGCTGGCTGAAGGTCTGCGCAAACCCTAAGTCCCTCGGCTTCTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGCTGAAGGTCTGCGCAAACCCTAAGTCCCTCGGCTTCTTACT  650

seq1  AACATTTATATACTGAGGTAAAAACTCTTGAAATATCTCTCTGTTCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATATACTGAGGTAAAAACTCTTGAAATATCTCTCTGTTCAATG  700

seq1  ATGAGAAAGTAAAGCCGTTATTTTTAAACTCAGTTGAGAGTTTTCAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAGTAAAGCCGTTATTTTTAAACTCAGTTGAGAGTTTTCAAAAA  750

seq1  ATTTAAGGTATTAGGTCTTCCTAGGAATTC  780
      ||||||||||||||||||||||||||||||
seq2  ATTTAAGGTATTAGGTCTTCCTAGGAATTC  780

seq1: chr3_80481278_80482349
seq2: B6Ng01-229J13.g_65_1128

seq1  GAATTCAGATTCCCTACTATAAGCATGGATAATTAATTTCATCCATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCCCTACTATAAGCATGGATAATTAATTTCATCCATAAAT  50

seq1  GAATGGATAGATAAATAGTGCCATTCATCACTTAACAGCTAAAATTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATAGATAAATAGTGCCATTCATCACTTAACAGCTAAAATTTAAT  100

seq1  TTTATTCTTAGAGTGCAGTTAAATTATACTTGAGTAGTTAGTAGTTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTAGAGTGCAGTTAAATTATACTTGAGTAGTTAGTAGTTTGGT  150

seq1  CTCAGAATCTTAGACCAAATATGTGAGATACCTCTTGACTTTTGCATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCTTAGACCAAATATGTGAGATACCTCTTGACTTTTGCATATG  200

seq1  GTTTTTTTTTTTTTTTTGCCTCAGATCTTCCTTTTTAATGATAAAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTGCCTCAGATCTTCCTTTTTAATGATAAAATCTA  250

seq1  AAAATAGTTGACAGAGCTGGGTCATCAGTGAAGGACTTAGAGGAGGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTGACAGAGCTGGGTCATCAGTGAAGGACTTAGAGGAGGGCTT  300

seq1  ATGAAATAGAGTTCAGAACATGAGGAATGCCAAAGCCATCCTGATATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGAGTTCAGAACATGAGGAATGCCAAAGCCATCCTGATATAGT  350

seq1  TCCTGTCTCAAGCTTTCTCTAGGTGTCTCTCATAGAACATACTGTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCAAGCTTTCTCTAGGTGTCTCTCATAGAACATACTGTATTCA  400

seq1  AATTTGTCTTTGATATAATTAGTTGGAAAATAGCAGAAATGATCTTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCTTTGATATAATTAGTTGGAAAATAGCAGAAATGATCTTTACT  450

seq1  CAACAGAACTTGATTGAGATACTTTCCAGTTCCCAAAGAAGGCAAAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAACTTGATTGAGATACTTTCCAGTTCCCAAAGAAGGCAAAGGCC  500

seq1  AGATGCAGTGGCCTACATTTGTTATCATTTGGGCATTCAAATACCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTGGCCTACATTTGTTATCATTTGGGCATTCAAATACCTAAAA  550

seq1  CAGGAAGATGAATGTGAGGCCAGCCTGAGACTTACACTGAATTTTAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGATGAATGTGAGGCCAGCCTGAGACTTACACTGAATTTTAAGTT  600

seq1  TTAAGGATGCCTCATCAGCATATGTATGCCATTTCAAAAGTGTGATAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATGCCTCATCAGCATATGTATGCCATTTCAAAAGTGTGATAAGA  650

seq1  AGTCTCCATCCCTAGACAGAGCTGCAGACAACCATTGGCTTCTGGAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCATCCCTAGACAGAGCTGCAGACAACCATTGGCTTCTGGAGGAG  700

seq1  AATTAGCCTTTTGCAAGGATGGACTCCCTAATTGTTTGTCAAAGGCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCTTTTGCAAGGATGGACTCCCTAATTGTTTGTCAAAGGCAAAG  750

seq1  TGTTCAGCTTTGAAACCATATACACACAAAGAACAAATATGGATTCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTTTGAAACCATATACACACAAAGAACAAATATGGATTCAGTA  800

seq1  TCAAAGCTGTGACCGTGCATGCCCAGAATTCCAGAACTCAGGAAACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTGTGACCGTGCATGCCCAGAATTCCAGAACTCAGGAAACAGAG  850

seq1  GCAGGCAGATCTCTCTGTGTCCAAGGATATCCTGGGCTACAGAGTTAGGT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGGCAGATCTCTCTGTGTCCAAGGATATCCT-GGCTACAGAGTTAGGT  899

seq1  CCAGGACAGCCAAAACTACACAAAGAAACTTAGTCTTGAATAAACAAATA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CCAGGACAGCCAAAACTACACAAAGAAACTTAGTC-TGAATAAACAAAT-  947

seq1  AATTAATAAATAACATAAATATTTCAAAAATGGACTAAGTTCTATTAATG  1000
      ||||||| |||||||||||||||   |||||||||||||||||||  |||
seq2  AATTAAT-AATAACATAAATATT--CAAAATGGACTAAGTTCTAT--ATG  992

seq1  TATTTTCTGTATCCATCTAGACAT-ACATATGTGTGTGTGTGTGTGTGTG  1049
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  TATTTTCTGTAT-CATCTAGACATAACATATGTGTGTGTGTGTGTGTGTG  1041

seq1  TGTGTAACAAATATAATCAAAGA  1072
      |||||||||||||||||||||||
seq2  TGTGTAACAAATATAATCAAAGA  1064