BAC Information

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BAC

Clone NameB6Ng01-229L21
Chromosome3 (Build37)
Map Location 45,475,705 - 45,627,507
singlet/doubletdoublet
Overlap geneLOC433580
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229L21.bB6Ng01-229L21.g
ACCGA042790GA042791
length1,1241,106
definitionB6Ng01-229L21.b B6Ng01-229L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,626,373 - 45,627,507)(45,475,705 - 45,476,815)
sequence
gaattctttaaaatgattgcataatcataaagaatttttgttcactatga
aaacatttgtttgcttaaatatttgtttgcttgtttgcttgtctgcaatt
tatgacacacagagatcaaatgcaaccagtgtacactattttttatacct
ttgcacacctaagaaaatatccttatgaacataagagctagtaaatacag
ctggaaatttgtaacagagactatccttggcgtttaaagatctgaatgac
attctgtctgtccttgtagaaagagaataaactcctaatagactgtggat
ctatataggagttctgacctatgcttccacttacagtgtgttttagtaaa
atgcgttgagagaagtggaaggctatttttcccttcctgtgacgttttgg
caattctatatagccataatagatgcaattctttcccattaacacactga
tctgtcaaattaccatgatttataaaattagaggcttttaacttgatatt
atgtctgtagctctttctctcactttgagcctaatttccatgccatgttt
tgttttaactttacaaaatgaatgttgacttcttgtctgtgcaaggagta
atgtgtacatacatcttaccgtgattaatttcagccataattttgtcaca
aagagactaaatatataaccccaaagttccaatagttctggggaaatgct
gactttttatttaagtcttcaggtgacaaactttgatggatggtctgaca
aggtcccttagcttagccttgctttgccaggcaaatgactgtggcaccag
cctgcccatttagttatcaacatctaacagcctaaagcagcagtatgaaa
gtcatttgtttgcacttctgacaagagcactccattgtgcagcttattca
actaagcaaaattttataaaaagttgttaaaagccttttgtcaccaataa
aatgttctttttcctgttaccaaaacctaataatgagagatatcttgaca
tggtatctgttgaaatctgagcagtagctagctaatactgctcaagtaat
tagtgtgatttcttttgtgtgttatactgctatcaaatcttctagtacat
ttttccctgatccaagaaattgct

gaattcaattatgaatgctttctacttcaattttgaattgaagtagataa
atctggagtatattaaacagaaatatgaaggttaaaaccaattgttatta
taacatttgccataataaaataattattttctgtgcggtcaaaaatttta
aaaatggtatttctattatataaacacacacacacacaaataacaaaaat
ataaaaaaaagtagtagtaactgtgaaggttcatgatgggattttaggag
cacaaatatattaaaaatgtttttaatttttcttatctaatattaaaaca
tctcataagacaaacattttatcactaatagtttggctatgattctaaat
gaagataattataaggatgaagccaagaattatttactcaaattttcagt
aggcaatttctattggaaaacttcattgaaataatggctaccttgccttt
gaaaaatatttagttcatagattttagaaagtaaagtgaacctttttgat
gcttattcattagcataaagaatctatcaagtgtccctaagaaaagtttt
ccctaaaggaagctgagatcttacatatggataggtaaaatagattttac
aacttttttcagtagtagaatagtctgttctacaagacagcagtagtatt
tacaggctggataatgtgtgtttcctgtagatttaaagcttaggaaatcc
atctctctctctctctctctctctctctctctctctctctctcacacaca
cacacacacacacacacacacacacacacacacatttcctgtagaaatgt
gtttacagtttgggaagtgcacataaattccctgcatttataaaaacagt
cagatgtaggtgcaagttgcttttttttgcaggattgcacacagactttt
atgagtcttgctattttattcacactttcccaatcaaccaatctctttac
aaagacagatgaagtctgcaaggagctcatggatgagatcttttagttga
ttagccatgtgccactgatttgattctcacactacataggacgacttatt
ttacagattgcctatatgcttcagcactaggggtatgccagggcagatct
aagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45626373_45627507
seq2: B6Ng01-229L21.b_48_1171 (reverse)

seq1  AGCAATTTCTGTGATCAAGGAAAAATGTTACTTAAGAAGGATTTGATAGC  50
      ||||||||||  ||||| ||||||||| ||||  |||| |||||||||||
seq2  AGCAATTTCTTGGATCAGGGAAAAATG-TACT--AGAA-GATTTGATAGC  46

seq1  AGTATAACAACAACAAAAGAAATCAACACTAATTACTTGAGCAGTATTTA  100
      |||||||||   |||||||||||| ||||||||||||||||||||| |||
seq2  AGTATAACA--CACAAAAGAAATC-ACACTAATTACTTGAGCAGTA-TTA  92

seq1  GCTAGCTACTTGCTCAGATTTCAACAGATACCATGTTCAAGATATTCTCT  150
      ||||||||| ||||||||||||||||||||||||| |||||||| |||||
seq2  GCTAGCTAC-TGCTCAGATTTCAACAGATACCATG-TCAAGATA-TCTCT  139

seq1  CATTATTAGGTTTTTGGTAACAGG-AAAAGAACATTTTATTGGTGACAAA  199
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CATTATTAGG-TTTTGGTAACAGGAAAAAGAACATTTTATTGGTGACAAA  188

seq1  AGGCTTTTAACAACTTTTTATAAAATTTTGCTTAGTTGAATAAGCTGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTAACAACTTTTTATAAAATTTTGCTTAGTTGAATAAGCTGCAC  238

seq1  AATGGAGTGCTCTTGTCAGAAGTGCAAACAAATGACTTTCATACTGCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTGCTCTTGTCAGAAGTGCAAACAAATGACTTTCATACTGCTGC  288

seq1  TTTAGGCTGTTAGATGTTGATAACTAAATGGGCAGGCTGGTGCCACAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTGTTAGATGTTGATAACTAAATGGGCAGGCTGGTGCCACAGTC  338

seq1  ATTTGCCTGGCAAAGCAAGGCTAAGCTAAGGGACCTTGTCAGACCATCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTGGCAAAGCAAGGCTAAGCTAAGGGACCTTGTCAGACCATCCA  388

seq1  TCAAAGTTTGTCACCTGAAGACTTAAATAAAAAGTCAGCATTTCCCCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTGTCACCTGAAGACTTAAATAAAAAGTCAGCATTTCCCCAGA  438

seq1  ACTATTGGAACTTTGGGGTTATATATTTAGTCTCTTTGTGACAAAATTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGAACTTTGGGGTTATATATTTAGTCTCTTTGTGACAAAATTAT  488

seq1  GGCTGAAATTAATCACGGTAAGATGTATGTACACATTACTCCTTGCACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAATTAATCACGGTAAGATGTATGTACACATTACTCCTTGCACAG  538

seq1  ACAAGAAGTCAACATTCATTTTGTAAAGTTAAAACAAAACATGGCATGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGTCAACATTCATTTTGTAAAGTTAAAACAAAACATGGCATGGA  588

seq1  AATTAGGCTCAAAGTGAGAGAAAGAGCTACAGACATAATATCAAGTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGCTCAAAGTGAGAGAAAGAGCTACAGACATAATATCAAGTTAAA  638

seq1  AGCCTCTAATTTTATAAATCATGGTAATTTGACAGATCAGTGTGTTAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTAATTTTATAAATCATGGTAATTTGACAGATCAGTGTGTTAATG  688

seq1  GGAAAGAATTGCATCTATTATGGCTATATAGAATTGCCAAAACGTCACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATTGCATCTATTATGGCTATATAGAATTGCCAAAACGTCACAG  738

seq1  GAAGGGAAAAATAGCCTTCCACTTCTCTCAACGCATTTTACTAAAACACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAAAATAGCCTTCCACTTCTCTCAACGCATTTTACTAAAACACA  788

seq1  CTGTAAGTGGAAGCATAGGTCAGAACTCCTATATAGATCCACAGTCTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTGGAAGCATAGGTCAGAACTCCTATATAGATCCACAGTCTATT  838

seq1  AGGAGTTTATTCTCTTTCTACAAGGACAGACAGAATGTCATTCAGATCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTATTCTCTTTCTACAAGGACAGACAGAATGTCATTCAGATCTT  888

seq1  TAAACGCCAAGGATAGTCTCTGTTACAAATTTCCAGCTGTATTTACTAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCCAAGGATAGTCTCTGTTACAAATTTCCAGCTGTATTTACTAGC  938

seq1  TCTTATGTTCATAAGGATATTTTCTTAGGTGTGCAAAGGTATAAAAAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTTCATAAGGATATTTTCTTAGGTGTGCAAAGGTATAAAAAATA  988

seq1  GTGTACACTGGTTGCATTTGATCTCTGTGTGTCATAAATTGCAGACAAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACTGGTTGCATTTGATCTCTGTGTGTCATAAATTGCAGACAAGC  1038

seq1  AAACAAGCAAACAAATATTTAAGCAAACAAATGTTTTCATAGTGAACAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCAAACAAATATTTAAGCAAACAAATGTTTTCATAGTGAACAAA  1088

seq1  AATTCTTTATGATTATGCAATCATTTTAAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATGATTATGCAATCATTTTAAAGAATTC  1124


seq1: chr3_45475705_45476815
seq2: B6Ng01-229L21.g_65_1170

seq1  GAATTCAATTATGAATGCTTTCTACTTCAATTTTGAATTGAAGTAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATGAATGCTTTCTACTTCAATTTTGAATTGAAGTAGATAA  50

seq1  ATCTGGAGTATATTAAACAGAAATATGAAGGTTAAAACCAATTGTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGTATATTAAACAGAAATATGAAGGTTAAAACCAATTGTTATTA  100

seq1  TAACATTTGCCATAATAAAATAATTATTTTCTGTGCGGTCAAAAATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGCCATAATAAAATAATTATTTTCTGTGCGGTCAAAAATTTTA  150

seq1  AAAATGGTATTTCTATTATATAAACACACACACACACAAATAACAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTATTTCTATTATATAAACACACACACACACAAATAACAAAAAT  200

seq1  ATAAAAAAAAGTAGTAGTAACTGTGAAGGTTCATGATGGGATTTTAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAGTAGTAGTAACTGTGAAGGTTCATGATGGGATTTTAGGAG  250

seq1  CACAAATATATTAAAAATGTTTTTAATTTTTCTTATCTAATATTAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATATTAAAAATGTTTTTAATTTTTCTTATCTAATATTAAAACA  300

seq1  TCTCATAAGACAAACATTTTATCACTAATAGTTTGGCTATGATTCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAAGACAAACATTTTATCACTAATAGTTTGGCTATGATTCTAAAT  350

seq1  GAAGATAATTATAAGGATGAAGCCAAGAATTATTTACTCAAATTTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAATTATAAGGATGAAGCCAAGAATTATTTACTCAAATTTTCAGT  400

seq1  AGGCAATTTCTATTGGAAAACTTCATTGAAATAATGGCTACCTTGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTTCTATTGGAAAACTTCATTGAAATAATGGCTACCTTGCCTTT  450

seq1  GAAAAATATTTAGTTCATAGATTTTAGAAAGTAAAGTGAACCTTTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATTTAGTTCATAGATTTTAGAAAGTAAAGTGAACCTTTTTGAT  500

seq1  GCTTATTCATTAGCATAAAGAATCTATCAAGTGTCCCTAAGAAAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCATTAGCATAAAGAATCTATCAAGTGTCCCTAAGAAAAGTTTT  550

seq1  CCCTAAAGGAAGCTGAGATCTTACATATGGATAGGTAAAATAGATTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGGAAGCTGAGATCTTACATATGGATAGGTAAAATAGATTTTAC  600

seq1  AACTTTTTTCAGTAGTAGAATAGTCTGTTCTACAAGACAGCAGTAGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTCAGTAGTAGAATAGTCTGTTCTACAAGACAGCAGTAGTATT  650

seq1  TACAGGCTGGATAATGTGTGTTTCCTGTAGATTTAAAGCTTAGGAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCTGGATAATGTGTGTTTCCTGTAGATTTAAAGCTTAGGAAATCC  700

seq1  ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACA  750

seq1  CACACACACACACACACACACACACACACACACATTTCCTGTAGAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACATTTCCTGTAGAAATGT  800

seq1  GTTTACAGTTTGGGAAGTGCACATAAATTCCCTGCATTTAT-AAAACAGT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTACAGTTTGGGAAGTGCACATAAATTCCCTGCATTTATAAAAACAGT  850

seq1  CAGATGTAGGTGCAAGTTGC-TTTTTTTGCAGGATTGCACAACAGAC-TT  897
      |||||||||||||||||||| ||||||||||||||||||| |||||| ||
seq2  CAGATGTAGGTGCAAGTTGCTTTTTTTTGCAGGATTGCAC-ACAGACTTT  899

seq1  TATGAGTCTTGCTA-TTTATTCAACACTTTCCCCAATCAACC-ATCTCTT  945
      |||||||||||||| ||||||| ||||||| ||||||||||| |||||||
seq2  TATGAGTCTTGCTATTTTATTC-ACACTTT-CCCAATCAACCAATCTCTT  947

seq1  TACAAAGACAGATGAAGGTCTGCAAGGAGGCTCAATGGATGAGAATCTTT  995
      |||||||||||||||| ||||||||||| |||| ||||||||||   |||
seq2  TACAAAGACAGATGAA-GTCTGCAAGGA-GCTC-ATGGATGAGATCTTTT  994

seq1  AGTTGA-TAGCCATGTGCACCTGAATTTGAATTCTCAACAACCAC-AAAT  1043
      |||||| |||||||||||  ||| ||||| |||||||     ||| | ||
seq2  AGTTGATTAGCCATGTGCCACTG-ATTTG-ATTCTCA-----CACTACAT  1037

seq1  AAGACAGACATA-TTTACAGA-TGCCTATA-GCTCCAGCACTAGGGGGTA  1090
      | ||| ||| || |||||||| |||||||| ||| |||||||| ||||||
seq2  AGGAC-GACTTATTTTACAGATTGCCTATATGCTTCAGCACTA-GGGGTA  1085

seq1  TGGCA-GGCAGATCACAAGGGC  1111
      || || ||||||||  ||||||
seq2  TGCCAGGGCAGATC-TAAGGGC  1106


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