BAC Information

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BAC

Clone NameB6Ng01-229O03
Chromosome3 (Build37)
Map Location 49,307,543 - 49,308,661
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247
Downstream geneLOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229O03.bB6Ng01-229O03.g
ACCGA042895GA042896
length1,2531,109
definitionB6Ng01-229O03.b B6Ng01-229O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagatgcataatactccattgtgtaaatgttcc
acattttctgtatgcattccccggttgagggacatctgcgttctttccgg
cttctggctattataaataaggctgttatgaacaaagtggagcatgtatc
ctgattacacgttggagcatcttctgggtatatgcccaggagtggtactg
ctgaatactccactattactatgtccaattttctgaggaattgccaaact
gatttccagagtggttttaccagcttgcaattcctctaaaggtggagcag
tgttcttctttctctacatcctcgccagcatctactgttacctgaggtct
tgatcttagccattctgactggtttgaggtggaatctcagagttgttttg
atttgcatttccctgatgactaaggatgtggaacataattttaggtgctt
ctcagccattcagtattcctcagttgagaattctttgtttagccctgtac
cccatttttaatagggttatttgtttctctggagtctaacttcttgagtt
ctttgtatatattggatctagccatctatcagatgtaggattggaaaaga
ccttttcccaataatgttggtttccttttggtcttcttgacagtgtcctt
tgccttacagaagctttgcaattttataaggtcccatttgttgattggtg
atcttacatcataagccattagtgttctgtttaggaattttccccctgtg
tccatatctttgagactcttcgccagtttatcttctataagtttcagtgt
atctggttttatgtgaaggtccttgattctcttggacttgaattttgtac
aaggagataagtctgttgttatgtctctcttttcatttctgattttttaa
ctacgatattgtccgtgtcccttagtaagtgtggctaggagtttatctat
gttgttgattcttctcaaagaaccagctcctggtttgggttgattctttg
tatagttctttttggtttccacttgggttgattccagccctgagtttgat
atttctgctctctactgctcttggggtgaatttgactcctttgttcagag
ctattaaggcatgctttgcagcttatggtgtatgctcttctctcagcttc
atttcggaaggcactgaacagcctaggagtttacctctaccactgccatt
gctgttttgtcgaattagccttaaggtataggtggtgagggcttgcacgt
act
gaattctctgcccacgtgttactcatattcacattacccttcctgaaata
taatttctgaaaaaaacgtctagagaaatgccaattggctattttctctc
tgcaatgttttaagcgacccttctcaatcttcctcttttagagtagctag
tagctttgcagtgtttataataaaattcataattaattacttgccaggca
tttccatgcctggttgtctggtagttactgttatatttttgaaagactta
aaaactaaattaaaacttgaactgtgcagttatgaaggaggcacagtgta
aggaccacaaatggactctcatttaccaggagcatctgtttctctttata
aatactcttcataggctctgtccaaaccatcaaccaaaataaaagcagga
cgttagaagcctgcagtataaacatcttcttctccttattaagtccgaat
cagttcataatgaacaagtaaaacaaagcacttaattctgctatatgtga
aagaaatgtgtataatgatttcagaaaaagagagaaagagagaataagta
agtgaggaggagagaaatgtcagagtggagcaagaaagacaggcagggag
attctgagccaaggatggataagaagtaaaaggacatggctaaaatagaa
gaaaaaagaatcaaagacgaggaagaaagtgtaacgagtatttaagaaaa
tactcatctttaatgttattcaaacacagtatttacattatctgtgtttt
aaaatggaatactactaataaagctattcttaaatagaagagaaatctgt
tggaggtatttataatgaaaatcacttttgtttcagtggaggtaatgttc
ttagaacatgtgctattaatgttcttatttgaatacagttcttgcatcga
cagtgtcttacttttaatttatttgttagaattatataaatgttaccact
tctgtgtatatgagatttctttattttctctttctaatattctttggctt
tgtggactttggaaactgtgtgcactatattaatgtagtattatgatagc
tgtttctggagcagagtggcagctctgtatgctagtttcattatcccaca
gcatgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49307543_49308661
seq2: B6Ng01-229O03.g_64_1172 (reverse)

seq1  GTCACATGCTGT-GGATAATGAAACTTAGCATTACAGAGCTGCCAACTCT  49
      |||||||||||| |||||||||||| ||||| |||||||||||| |||||
seq2  GTCACATGCTGTGGGATAATGAAAC-TAGCA-TACAGAGCTGCC-ACTCT  47

seq1  GGCTCAG-AACAGCTATTCAT-ATACTACATTTAATATAGTGCACAACAG  97
      |   ||| |||||||| |||| |||||||| |||||||||||||| ||||
seq2  GCTCCAGAAACAGCTA-TCATAATACTACA-TTAATATAGTGCAC-ACAG  94

seq1  TTTCCAAAGTCCACAAAAGCCAAAAGAAATATTAGAAAAGAAGAAAAATA  147
      |||||||||||||| |||||||||   |||||||| |||||   ||||||
seq2  TTTCCAAAGTCCAC-AAAGCCAAA--GAATATTAG-AAAGA--GAAAATA  138

seq1  AAGAAATCTTCATATACACAGAAGTGGTAACATTTATATAATTCTAACAA  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATC-TCATATACACAGAAGTGGTAACATTTATATAATTCTAACAA  187

seq1  ATAAATTAAAAGTAAGACACTGTCGATGCAAGAACTGTATTCAAATAAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAAGTAAGACACTGTCGATGCAAGAACTGTATTCAAATAAGA  237

seq1  ACATTAATAGCACATGTTCTAAGAACATTACCTCCACTGAAACAAAAGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATAGCACATGTTCTAAGAACATTACCTCCACTGAAACAAAAGTG  287

seq1  ATTTTCATTATAAATACCTCCAACAGATTTCTCTTCTATTTAAGAATAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTATAAATACCTCCAACAGATTTCTCTTCTATTTAAGAATAGC  337

seq1  TTTATTAGTAGTATTCCATTTTAAAACACAGATAATGTAAATACTGTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGTAGTATTCCATTTTAAAACACAGATAATGTAAATACTGTGTT  387

seq1  TGAATAACATTAAAGATGAGTATTTTCTTAAATACTCGTTACACTTTCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACATTAAAGATGAGTATTTTCTTAAATACTCGTTACACTTTCTT  437

seq1  CCTCGTCTTTGATTCTTTTTTCTTCTATTTTAGCCATGTCCTTTTACTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCTTTGATTCTTTTTTCTTCTATTTTAGCCATGTCCTTTTACTTC  487

seq1  TTATCCATCCTTGGCTCAGAATCTCCCTGCCTGTCTTTCTTGCTCCACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATCCTTGGCTCAGAATCTCCCTGCCTGTCTTTCTTGCTCCACTC  537

seq1  TGACATTTCTCTCCTCCTCACTTACTTATTCTCTCTTTCTCTCTTTTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCTCTCCTCCTCACTTACTTATTCTCTCTTTCTCTCTTTTTCT  587

seq1  GAAATCATTATACACATTTCTTTCACATATAGCAGAATTAAGTGCTTTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTATACACATTTCTTTCACATATAGCAGAATTAAGTGCTTTGT  637

seq1  TTTACTTGTTCATTATGAACTGATTCGGACTTAATAAGGAGAAGAAGATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTTCATTATGAACTGATTCGGACTTAATAAGGAGAAGAAGATG  687

seq1  TTTATACTGCAGGCTTCTAACGTCCTGCTTTTATTTTGGTTGATGGTTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGCAGGCTTCTAACGTCCTGCTTTTATTTTGGTTGATGGTTTG  737

seq1  GACAGAGCCTATGAAGAGTATTTATAAAGAGAAACAGATGCTCCTGGTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCCTATGAAGAGTATTTATAAAGAGAAACAGATGCTCCTGGTAA  787

seq1  ATGAGAGTCCATTTGTGGTCCTTACACTGTGCCTCCTTCATAACTGCACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGTCCATTTGTGGTCCTTACACTGTGCCTCCTTCATAACTGCACA  837

seq1  GTTCAAGTTTTAATTTAGTTTTTAAGTCTTTCAAAAATATAACAGTAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTTTTAATTTAGTTTTTAAGTCTTTCAAAAATATAACAGTAACT  887

seq1  ACCAGACAACCAGGCATGGAAATGCCTGGCAAGTAATTAATTATGAATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAACCAGGCATGGAAATGCCTGGCAAGTAATTAATTATGAATTT  937

seq1  TATTATAAACACTGCAAAGCTACTAGCTACTCTAAAAGAGGAAGATTGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAACACTGCAAAGCTACTAGCTACTCTAAAAGAGGAAGATTGAG  987

seq1  AAGGGTCGCTTAAAACATTGCAGAGAGAAAATAGCCAATTGGCATTTCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCGCTTAAAACATTGCAGAGAGAAAATAGCCAATTGGCATTTCTC  1037

seq1  TAGACGTTTTTTTCAGAAATTATATTTCAGGAAGGGTAATGTGAATATGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGTTTTTTTCAGAAATTATATTTCAGGAAGGGTAATGTGAATATGA  1087

seq1  GTAACACGTGGGCAGAGAATTC  1119
      ||||||||||||||||||||||
seq2  GTAACACGTGGGCAGAGAATTC  1109