BAC Information

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BAC

Clone NameB6Ng01-230K16
Chromosome3 (Build37)
Map Location 49,465,630 - 49,563,127
singlet/doubletdoublet
Overlap genePcdh18
Upstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230K16.bB6Ng01-230K16.g
ACCGA043471GA043472
length1,158492
definitionB6Ng01-230K16.b B6Ng01-230K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,465,630 - 49,466,793)(49,562,631 - 49,563,127)
sequence
gaattctttttctcaaataataaatggaaatttattttttgtgacaagca
tattcaaattagcacatctttccttatgaagaactgaggcttgtcacagt
ccaatattctttaatcagtcagttgatttcctggggagagtagaatttgt
tttgaagtatctatatttcaaaagattttgtatgtcttgtagatatggtg
aaatcttttcctctctcttgattctgaaaccctggaatttaaatcttatt
atagtcttcatattgtggtagctattgtggaaaatagaggtttgtaacac
tgggatttggaggcagttgaaagagtacagaagtcaacttttccaggtgt
gtatcaaataaaatgcacaatacatagtaacaagtgagttcagacatgct
aggcaaggatattttacatgcattttcaaatggtatcctaagaatatcgc
cctaaatagaactcatggagatccccctgaagggtatgggcatatgctct
aggaaatgtaattagacagttgaaggttaaagcacaggcaggaagattgc
tgttagagtgcatctttctgtaaaattgatgcaaagcaatctagtaattc
caaaattcaaacaaaagcccacacaggcagaaaaggctactataaaactt
catatacagtggttttattagagagtatagccaactcctgaagcataaag
atttacagaaattactatatttaaggtatagtggaaagctcaaatatgac
acattaaaaatctttatactaggtgtctcatagtaaatcactatcattta
aaaggacaaatgcacaaatgcatagatggaaactggtcctgcaaatataa
tctaagttttagaagtgtgatgcaaacctaaggaaaaataaattcataat
ttgtagaaaatctttcagttacttccaactctttctttttgttgataata
tgtatagtattacattggtttattctactgaaatacttgatcttcaaatt
ggccataagatatgaaccacttcttgtgtggaggatagcttcgtccatag
cctataacttattataacaattgtattcttcatgccctcctctgacaacg
gactggtaatctgagtagagctctagaaagttctgagcgtgtctgagaat
aggctttc

tctccctaattttgaatagtcactaactcctttttttgttcctttggctt
ttacagagaggctctctaaagcccgaactgacataattattggctcagat
tgttagcgacataggccagatggctgtgagtttctaaagtcccagttgct
tatggtagttttctgagtttgtctatagggtttggggatcagcaatttga
aagggttgcaaacttgtaaaatggtgttattgggggggcagagtgttcat
cagagtgacatagcactaaacacattcatagcagacatcctagtctgcac
aatttgacacacagcactggtttctgggggtgggaatgggggtgagacaa
tggctcataaaatgtttttgaatgcttagaatgaaggagagtttgtattg
gggctcttctctggtttcttcttgggggagtaccttctctgtgactatag
ctgagttctgcttgagagtaagcaaagtggaaaaatcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49465630_49466793
seq2: B6Ng01-230K16.b_45_1202

seq1  GAATTCTTTTTCTCAAATAATAAATGGAAATTTATTTTTTGTGACAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTCAAATAATAAATGGAAATTTATTTTTTGTGACAAGCA  50

seq1  TATTCAAATTAGCACATCTTTCCTTATGAAGAACTGAGGCTTGTCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATTAGCACATCTTTCCTTATGAAGAACTGAGGCTTGTCACAGT  100

seq1  CCAATATTCTTTAATCAGTCAGTTGATTTCCTGGGGAGAGTAGAATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTCTTTAATCAGTCAGTTGATTTCCTGGGGAGAGTAGAATTTGT  150

seq1  TTTGAAGTATCTATATTTCAAAAGATTTTGTATGTCTTGTAGATATGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTATCTATATTTCAAAAGATTTTGTATGTCTTGTAGATATGGTG  200

seq1  AAATCTTTTCCTCTCTCTTGATTCTGAAACCCTGGAATTTAAATCTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTCCTCTCTCTTGATTCTGAAACCCTGGAATTTAAATCTTATT  250

seq1  ATAGTCTTCATATTGTGGTAGCTATTGTGGAAAATAGAGGTTTGTAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTCATATTGTGGTAGCTATTGTGGAAAATAGAGGTTTGTAACAC  300

seq1  TGGGATTTGGAGGCAGTTGAAAGAGTACAGAAGTCAACTTTTCCAGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGGAGGCAGTTGAAAGAGTACAGAAGTCAACTTTTCCAGGTGT  350

seq1  GTATCAAATAAAATGCACAATACATAGTAACAAGTGAGTTCAGACATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAATAAAATGCACAATACATAGTAACAAGTGAGTTCAGACATGCT  400

seq1  AGGCAAGGATATTTTACATGCATTTTCAAATGGTATCCTAAGAATATCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGATATTTTACATGCATTTTCAAATGGTATCCTAAGAATATCGC  450

seq1  CCTAAATAGAACTCATGGAGATCCCCCTGAAGGGTATGGGCATATGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATAGAACTCATGGAGATCCCCCTGAAGGGTATGGGCATATGCTCT  500

seq1  AGGAAATGTAATTAGACAGTTGAAGGTTAAAGCACAGGCAGGAAGATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGTAATTAGACAGTTGAAGGTTAAAGCACAGGCAGGAAGATTGC  550

seq1  TGTTAGAGTGCATCTTTCTGTAAAATTGATGCAAAGCAATCTAGTAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGTGCATCTTTCTGTAAAATTGATGCAAAGCAATCTAGTAATTC  600

seq1  CAAAATTCAAACAAAAGCCCACACAGGCAGAAAAGGCTACTATAAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCAAACAAAAGCCCACACAGGCAGAAAAGGCTACTATAAAACTT  650

seq1  CATATACAGTGGTTTTATTAGAGAGTATAGCCAACTCCTGAAGCATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACAGTGGTTTTATTAGAGAGTATAGCCAACTCCTGAAGCATAAAG  700

seq1  ATTTACAGAAATTACTATATTTAAGGTATAGTGGAAAGCTCAAATATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGAAATTACTATATTTAAGGTATAGTGGAAAGCTCAAATATGAC  750

seq1  ACATTAAAAATCTTTATACTAGGTGTCTCATAGTAAATCACTATCATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAAATCTTTATACTAGGTGTCTCATAGTAAATCACTATCATTTA  800

seq1  AAAGGACAAATGCACAAATGCATAGATGGAAACTGGTCCTGCAAATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAATGCACAAATGCATAGATGGAAACTGGTCCTGCAAATATAA  850

seq1  TCTAAGTTTTAGAAGTGTGATGCAAACCTAAGGAAAAATAAATTCATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTTTAGAAGTGTGATGCAAACCTAAGGAAAAATAAATTCATAAT  900

seq1  TTGTAGAAAAATCTTTCAGTTACTTCCAACTCTTTCTTTTTGTTGATAAT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAG-AAAATCTTTCAGTTACTTCCAACTCTTTCTTTTTGTTGATAAT  949

seq1  ATGTATAGTATTACATT-GTTTA-TCTACTGAAATACTTGATCTTCAAAT  998
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  ATGTATAGTATTACATTGGTTTATTCTACTGAAATACTTGATCTTCAAAT  999

seq1  T-GCCATAAGATATGAACCACTTCTGTGT-TGGAGGATAGCCTTCGTCCA  1046
      | ||||||||||||||||||||||| ||| |||||||||| |||||||||
seq2  TGGCCATAAGATATGAACCACTTCT-TGTGTGGAGGATAG-CTTCGTCCA  1047

seq1  TAG-CTATAACTTATTATAACAATGGTA-TCTTCATGCCCTCTCCTGACA  1094
      ||| |||||||||||||||||||| ||| |||||||||||||  ||||||
seq2  TAGCCTATAACTTATTATAACAATTGTATTCTTCATGCCCTCCTCTGACA  1097

seq1  ACAGACCTGGT-ATCTGGAAGTAGAGCTCCTTAGAAAGTTCCTGAAGCTG  1143
      || || ||||| |||||  ||||||||||  ||||||||| ||||   ||
seq2  ACGGA-CTGGTAATCTG--AGTAGAGCTC--TAGAAAGTT-CTGAGCGTG  1141

seq1  TTGTTCTGAGAATAAGCTTTC  1164
          |||||||||| ||||||
seq2  ----TCTGAGAATAGGCTTTC  1158


seq1: chr3_49562631_49563127
seq2: B6Ng01-230K16.g_69_566 (reverse)

seq1  TTTCTGATTTTTCCACTTTGCTTACTCTC-AGCAGAACTCAGCTATAGTC  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCTGATTTTTCCACTTTGCTTACTCTCAAGCAGAACTCAGCTATAGTC  50

seq1  ACAGAGAAGGTACTCCCCCAAGAAGAAACCAGAGAAGAGCCCCAATACAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGGTACTCCCCCAAGAAGAAACCAGAGAAGAGCCCCAATACAA  100

seq1  ACTCTCCTTCATTCTAAGCATTCAAAAACATTTTATGAGCCATTGTCTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTTCATTCTAAGCATTCAAAAACATTTTATGAGCCATTGTCTCA  150

seq1  CCCCCATTCCCACCCCCAGAAACCAGTGCTGTGTGTCAAATTGTGCAGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTCCCACCCCCAGAAACCAGTGCTGTGTGTCAAATTGTGCAGAC  200

seq1  TAGGATGTCTGCTATGAATGTGTTTAGTGCTATGTCACTCTGATGAACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTCTGCTATGAATGTGTTTAGTGCTATGTCACTCTGATGAACAC  250

seq1  TCTGCCCCCCCAATAACACCATTTTACAAGTTTGCAACCCTTTCAAATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCCCAATAACACCATTTTACAAGTTTGCAACCCTTTCAAATTG  300

seq1  CTGATCCCCAAACCCTATAGACAAACTCAGAAAACTACCATAAGCAACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCCAAACCCTATAGACAAACTCAGAAAACTACCATAAGCAACTG  350

seq1  GGACTTTAGAAACTCACAGCCATCTGGCCTATGTCGCTAACAATCTGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTAGAAACTCACAGCCATCTGGCCTATGTCGCTAACAATCTGAGC  400

seq1  CAATAATTATGTCAGTTCGGGCTTTAGAGAGCCTCTCTGTAAAAGCCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTATGTCAGTTCGGGCTTTAGAGAGCCTCTCTGTAAAAGCCAAA  450

seq1  GGAACAAAAAAAGGAGTTAGTGACTATTCAAAATTAGGGAGAGAATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAAAAAGGAGTTAGTGACTATTCAAAATTAGGGAGAGAATTC  498


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