BAC Information

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BAC

Clone NameB6Ng01-230N01
Chromosome19 (Build37)3 (Build37)
Map Location 17,102,506 - 17,102,70119,114,935 - 19,115,932
singlet/doubletsingletsinglet
Overlap geneA230083H22Rik
Upstream geneLOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230N01.bB6Ng01-230N01.g
ACCGA043582GA043583
length1,0271,002
definitionB6Ng01-230N01.b B6Ng01-230N01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,102,506 - 17,102,701)(19,114,935 - 19,115,932)
sequence
gaattcagggcctctggaagaacacccagtgctcttaaccgctgagctat
ctctccagcccccaccatctgaatcttctgattcagaggatcataggcaa
ttattttgaaaatatatgttccaataaatacataacttagaagtgaatat
attgctagccacatatgatgtaccaaaaccgaaccaagaggctcataagc
aacctagacagatacataatgagcaatgagattaaaagagtaatggtttc
ccaaaaagggaagggtgtagaaccaaggactcactgttggaattcataag
atgtttaaaaagaactaaggtcagagttcctcagattagtctataaaatg
taaaggaaagaaatgcttccattttcaccttgaaaccaaaaccagagaac
aaaaatcatacacaaatatctttgatgaacataaatcctcaacaaaacac
ttgcaaacagaagtcaataatacattaagaagataatctcagctgggtgt
ggtggcacaggcctttaatcccagcacttgggaggcagaggcagtcggat
ttctgagttcaaggccagcctggtctacaaaaaaaaaaagaaagaaagaa
gaaaagaaaaaagataatctcacacaccaagcatcctggctattgtgtgt
tggcttttgttctcttgatgatgatagctatgctgactagggtgaactag
aatcttaatgtaatttttttttatttgtagctcttgtatagctaaaagtg
tatgtgcttattcaacacatatatgtctttttgaaaatcattcagcccag
gcagtggtggcacacgcccttcagtcccagcactccagagggcagaggca
ggcagatttctgaatttcaaagccagccctggtctacagagtgagttcca
ggacagccaggactatacagaggaaaccctgtctaaaaaaaaaaaaggaa
aggaaaaaaaaaaaggaaaaaaagaggaacctcattcagtccatttgccc
atattttggttggtttacttgttcttt

gaattcttgcattttgaagcattcccagcgactggcatgtccgacttcag
ggagcagtgtttccagtgttcagactttgacagtgtgggcttgagagaaa
tgacattaacgattcccctctcctttcggcttctgggatgtggttggatt
acatggttcccatatttcttgtttgatgtgcttagtcaaacacaggaatt
gctggtactagaaggcaaagccaggaccctacagaagggctcagacattc
tcggtttgagcttcccggtggttatgattagattgcaatttggaagatga
aattttttaggtgaagacaaaaacaaaagaaaacaaaacaaaaccaatcg
gcagcctttcctcttgacagtggtggaggagcaacaggctctgtagacag
gaaaggagtggggcagtgctggcatacagctggggaatagtgacttgtgt
gataccctgatgagcagtgtgtaggtgtctgtctattcaggtctccttca
cagcctgtgatggccacctttatgctttccttgcagggcagaagtcagtt
ccaagcctcctcatgaggatgaccctccttgctttgagaagcccccaagc
aggcacacttccttcccaagcctgtctcaagacaagccttctccagagag
gacgctggccagcgaggaggccctgcagaagatctctgcccttgagaatg
agcttgctgcccttagagctcagattgccaaagattgtgaccctgcagag
caacagagtccaagtgcaggttatgtggcccctgaagtggcttgttgtga
ctggacagtgcaagctgtgtctttctctagtcttgcctaagacagcacaa
aaacccgatgatgtctgtgtgacttttaatttgagaagagtagggaaaaa
aatctgcttggcaactctgaatggcctgcattggaagtggcctgttgtga
atggctgctttaatgggaagtttaaatcccccatctgataacccactcct
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17102506_17102701
seq2: B6Ng01-230N01.b_540_1012

seq1  --------------------------------------------------  0
                                                        
seq2  GGGTGTGGTGGCACAGGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  50

seq1  --------------------------------------------------  0
                                                        
seq2  TCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAAAAAAAAAGAAAG  100

seq1  --------------------------------------------------  0
                                                        
seq2  AAAGAAGAAAAGAAAAAAGATAATCTCACACACCAAGCATCCTGGCTATT  150

seq1  --------------------------------------------------  0
                                                        
seq2  GTGTGTTGGCTTTTGTTCTCTTGATGATGATAGCTATGCTGACTAGGGTG  200

seq1  --------------------------------------------------  0
                                                        
seq2  AACTAGAATCTTAATGTAATTTTTTTTTATTTGTAGCTCTTGTATAGCTA  250

seq1  --------------------------------------------------  0
                                                        
seq2  AAAGTGTATGTGCTTATTCAACACATATATGTCTTTTTGAAAATCATTCA  300

seq1  -----GGGTGTGGTGGCGCATG-CCTTTAATCCCAGCACTCGGGA-GGCA  43
           ||  |||||||| || | |||| | |||||||||||  || ||||
seq2  GCCCAGGCAGTGGTGGCACACGCCCTTCAGTCCCAGCACTCCAGAGGGCA  350

seq1  GAGGCAGGCAGATTTCTG-AGTTCAAGGCCAG-CCTGGTCTACAAAGTGA  91
      |||||||||||||||||| | ||||| ||||| ||||||||||| |||||
seq2  GAGGCAGGCAGATTTCTGAATTTCAAAGCCAGCCCTGGTCTACAGAGTGA  400

seq1  GTTCCAGGACAGCCAGGGCTACACAGA-GAAACCCTGTCTCGAAAAGAAC  140
      ||||||||||||||||| ||| ||||| ||||||||||||          
seq2  GTTCCAGGACAGCCAGGACTATACAGAGGAAACCCTGTCT----------  440

seq1  AAAACAAAACAACAACAACAACAACAACAAAAAAAAAAGGAAAAAAAAGG  190
           ||||                || |||||  |||||||||||||  
seq2  -----AAAA----------------AAAAAAAAGGAAAGGAAAAAAAA--  467

seq1  AAAGGA  196
      ||||||
seq2  AAAGGA  473


seq1: chr3_19114935_19115932
seq2: B6Ng01-230N01.g_72_1073

seq1  GAATTCTTGCATTTTGAAGCATTCCCAGCGACTGGCATGTCCGACTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATTTTGAAGCATTCCCAGCGACTGGCATGTCCGACTTCAG  50

seq1  GGAGCAGTGTTTCCAGTGTTCAGACTTTGACAGTGTGGGCTTGAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTGTTTCCAGTGTTCAGACTTTGACAGTGTGGGCTTGAGAGAAA  100

seq1  TGACATTAACGATTCCCCTCTCCTTTCGGCTTCTGGGATGTGGTTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAACGATTCCCCTCTCCTTTCGGCTTCTGGGATGTGGTTGGATT  150

seq1  ACATGGTTCCCATATTTCTTGTTTGATGTGCTTAGTCAAACACAGGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTCCCATATTTCTTGTTTGATGTGCTTAGTCAAACACAGGAATT  200

seq1  GCTGGTACTAGAAGGCAAAGCCAGGACCCTACAGAAGGGCTCAGACATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTACTAGAAGGCAAAGCCAGGACCCTACAGAAGGGCTCAGACATTC  250

seq1  TCGGTTTGAGCTTCCCGGTGGTTATGATTAGATTGCAATTTGGAAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTGAGCTTCCCGGTGGTTATGATTAGATTGCAATTTGGAAGATGA  300

seq1  AATTTTTTAGGTGAAGACAAAAACAAAAGAAAACAAAACAAAACCAATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTAGGTGAAGACAAAAACAAAAGAAAACAAAACAAAACCAATCG  350

seq1  GCAGCCTTTCCTCTTGACAGTGGTGGAGGAGCAACAGGCTCTGTAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTTCCTCTTGACAGTGGTGGAGGAGCAACAGGCTCTGTAGACAG  400

seq1  GAAAGGAGTGGGGCAGTGCTGGCATACAGCTGGGGAATAGTGACTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTGGGGCAGTGCTGGCATACAGCTGGGGAATAGTGACTTGTGT  450

seq1  GATACCCTGATGAGCAGTGTGTAGGTGTCTGTCTATTCAGGTCTCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCTGATGAGCAGTGTGTAGGTGTCTGTCTATTCAGGTCTCCTTCA  500

seq1  CAGCCTGTGATGGCCACCTTTATGCTTTCCTTGCAGGGCAGAAGTCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTGATGGCCACCTTTATGCTTTCCTTGCAGGGCAGAAGTCAGTT  550

seq1  CCAAGCCTCCTCATGAGGATGACCCTCCTTGCTTTGAGAAGCCCCCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTCCTCATGAGGATGACCCTCCTTGCTTTGAGAAGCCCCCAAGC  600

seq1  AGGCACACTTCCTTCCCAAGCCTGTCTCAAGACAAGCCTTCTCCAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACTTCCTTCCCAAGCCTGTCTCAAGACAAGCCTTCTCCAGAGAG  650

seq1  GACGCTGGCCAGCGAGGAGGCCCTGCAGAAGATCTCTGCCCTTGAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGGCCAGCGAGGAGGCCCTGCAGAAGATCTCTGCCCTTGAGAATG  700

seq1  AGCTTGCTGCCCTTAGAGCTCAGATTGCC-AAGATTGTGACCCTGCAGGA  749
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  AGCTTGCTGCCCTTAGAGCTCAGATTGCCAAAGATTGTGACCCTGCA-GA  749

seq1  GCAACAGAGTCCAAGTGCAGG-TATGTGGCCCCTGAAGTGGCTTGTTGTG  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAACAGAGTCCAAGTGCAGGTTATGTGGCCCCTGAAGTGGCTTGTTGTG  799

seq1  ACTGGACAGTGCAAGCTGTGTC-TTCTCTAGTCTTGCCTAAGACAGCAC-  846
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  ACTGGACAGTGCAAGCTGTGTCTTTCTCTAGTCTTGCCTAAGACAGCACA  849

seq1  AAAACCCGATGATGTCTGTGTGAC-TTTAATTTGAGAAGAGTAGGGAAAA  895
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAACCCGATGATGTCTGTGTGACTTTTAATTTGAGAAGAGTAGGGAAAA  899

seq1  AAATCTGCTTGGCAAACTCTGAAATGCCTGCATTTGAAGTGGGCTGTTGT  945
      ||||||||||||| |||||||||  ||||||||| ||||||| |||||||
seq2  AAATCTGCTTGGC-AACTCTGAATGGCCTGCATTGGAAGTGGCCTGTTGT  948

seq1  GAATGGCTGCTTT-ATGGGAAGTTTAGATTCCCCCATCTGATAA-CCACT  993
      ||||||||||||| |||||||||||| | ||||||||||||||| |||||
seq2  GAATGGCTGCTTTAATGGGAAGTTTA-AATCCCCCATCTGATAACCCACT  997

seq1  CCTCT  998
      |||||
seq2  CCTCT  1002


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