BAC Information

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BAC

Clone NameB6Ng01-230N21
Chromosome3 (Build37)
Map Location 106,138,881 - 106,177,134
singlet/doubletdoublet
Overlap genenone
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696
Downstream geneBC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230N21.bB6Ng01-230N21.g
ACCGA043619GA043620
length1,1211,080
definitionB6Ng01-230N21.b B6Ng01-230N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,138,881 - 106,139,959)(106,176,052 - 106,177,134)
sequence
gaattctctgccctgccttaaccacttgtcaacatgtgaaaaggaacaaa
aaggcttctaacactggagaaagttcaaggccagacacacctcgtaaagc
tgtaatgtcccacagttctggttccacctcgcgaaggagggatctccctt
gcgctggtgtgattgtagttcccaggtttcttggcgccacatattgcctg
agcttttgtccccgccggcaagaacacactcaggacaaccagaatcttct
gcggcaaagcttttattgcttacttatcaggagggaagaccccgaactgg
gaaaatggcgctgcttatatagcccgcagcgtgacatttcagcacctgat
gtggcgtgacagctcctgattcgttgctcgcccatcaccccattactaag
ctgcaagatgggtagtgactaggtgtgagttcactcttgcacttgcgcat
aaggcttgtttactagttaggtgcagtggaagccagcgccatcttatctt
ggcgattgctcacagcacacatgcgattgctcgcagcacggctctccaca
atacaccatttaaccaaaaggaaaaacagtatctacagtaatactccata
catcagcgtaagtgccatctcagctgtcactgagtcatttaccaccccat
acagattactccttcttgtaggactgctgagttattcttgtattgtgtcc
ctgagatctcctcaggattaattcctgaggaaagtctggttttgggtatt
gtagctttcctcctctgagatgacccttgtgacttcagccaatgttttct
tgaaagttgattttatgggttttgcttttttcaactgtcacactatttat
ttggtccttctaagtaagtggtccaaatagtcctctaacctttacgaagc
aaggttatatattagtttcatttcagccatccattcaaatctcggatatt
taagcatggagtttctatacaatgccacttcagtgtgtctctcatctcta
ccatactgtttaggtgtagtttctttttggagattttatactgtttaaat
ctcatactcatttctgctttgatttactgtgtagtcaatatggtggccta
gaaaatttatcgctatagttt
gaattcagttaaggcaagcccaagatttagttctatttttctccattgaa
gcatgatgcaaaatccactgtgttaaagcttgtgtggaagttgctgttat
tctgatagtttcaaagacaaattatttgctaaacctccctttgatatgga
accctgaaacctgaaccacacaaaacaagacacagcagtgtccatggagg
caaatggggaagaaaagaacaatctcagtaacatggactagagaagccat
tgactgcaatgtctttcaggttatataagaaaataaatccctaaatagta
tttagtgaacttgcaacatcatcctggagttaacctacatccaggtctct
aaaacctacctcagagcaggctgaactagcaattaaaatgttgcttttac
catcagtgccataagcaacagtttattgatacccattgggtaaatgggtt
tgttgaaaatctcagaatatgttatatgttacagaaaatatggacaaaca
tgcatgtcagcactttcaaagtatttctgtaaaaagccctcaaaggaact
gatttacactctaaggatatggttcaaagaggagaaaaatctgatagtga
gggttagtatagtttctggagactcaaataacctaaatacttaattgacc
tggaagagcctgcctcacgttcaaggtagccttggttcccagtaagtatg
taacataaattaatggaactgaagagatggggtaagtgtctttcactttg
gaaagaacacataaatgaatttttaaaaaaagagaggagaaggtattggg
ttatccaggcaaactttgaatgaatgaaggggattgtatactatgagtat
aattctagtgtcacttactggcactgtgtacattcagatctctctttaaa
gtagaagtcagagagaacttccctagtaacagaaggaaccagtgaaatca
tccatgtccatctaccagactatggcacctcctaatttaattgtcctcag
cactgagcctgtgaaactgaaaatatttgtcacatgatttcctgtgatca
gaatacaatctcagcacattcaatggtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106138881_106139959
seq2: B6Ng01-230N21.b_101_1168

seq1  GCTTCTAACACTGGAGAAAGTTCAAGGCCAGACACACCTCGTAAAGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAACACTGGAGAAAGTTCAAGGCCAGACACACCTCGTAAAGCTGT  50

seq1  AATGTCCCACAGTTCTGGTTCCACCTCGCGAAGGAGGGATCTCCCTTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCACAGTTCTGGTTCCACCTCGCGAAGGAGGGATCTCCCTTGCG  100

seq1  CTGGTGTGATTGTAGTTCCCAGGTTTCTTGGCGCCACATATTGCCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGATTGTAGTTCCCAGGTTTCTTGGCGCCACATATTGCCTGAGC  150

seq1  TTTTGTCCCCGCCGGCAAGAACACACTCAGGACAACCAGAATCTTCTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCCCGCCGGCAAGAACACACTCAGGACAACCAGAATCTTCTGCG  200

seq1  GCAAAGCTTTTATTGCTTACTTATCAGGAGGGAAGACCCCGAACTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTTTATTGCTTACTTATCAGGAGGGAAGACCCCGAACTGGGAA  250

seq1  AATGGCGCTGCTTATATAGCCCGCAGCGTGACATTTCAGCACCTGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGCTGCTTATATAGCCCGCAGCGTGACATTTCAGCACCTGATGTG  300

seq1  GCGTGACAGCTCCTGATTCGTTGCTCGCCCATCACCCCATTACTAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGACAGCTCCTGATTCGTTGCTCGCCCATCACCCCATTACTAAGCTG  350

seq1  CAAGATGGGTAGTGACTAGGTGTGAGTTCACTCTTGCACTTGCGCATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGGTAGTGACTAGGTGTGAGTTCACTCTTGCACTTGCGCATAAG  400

seq1  GCTTGTTTACTAGTTAGGTGCAGTGGAAGCCAGCGCCATCTTATCTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTACTAGTTAGGTGCAGTGGAAGCCAGCGCCATCTTATCTTGGC  450

seq1  GATTGCTCACAGCACACATGCGATTGCTCGCAGCACGGCTCTCCACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTCACAGCACACATGCGATTGCTCGCAGCACGGCTCTCCACAATA  500

seq1  CACCATTTAACCAAAAGGAAAAACAGTATCTACAGTAATACTCCATACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTAACCAAAAGGAAAAACAGTATCTACAGTAATACTCCATACAT  550

seq1  CAGCGTAAGTGCCATCTCAGCTGTCACTGAGTCATTTACCACCCCATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTAAGTGCCATCTCAGCTGTCACTGAGTCATTTACCACCCCATACA  600

seq1  GATTACTCCTTCTTGTAGGACTGCTGAGTTATTCTTGTATTGTGTCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTCCTTCTTGTAGGACTGCTGAGTTATTCTTGTATTGTGTCCCTG  650

seq1  AGATCTCCTCAGGATTAATTCCTGAGGAAAGTCTGGTTTTGGGTATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCCTCAGGATTAATTCCTGAGGAAAGTCTGGTTTTGGGTATTGTA  700

seq1  GCTTTCCTCCTCTGAGATGACCCTTGTGACTTCAGCCAATGTTTTCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCCTCTGAGATGACCCTTGTGACTTCAGCCAATGTTTTCTTGA  750

seq1  AAGTTGATTTTAT-GGTTTTGCTTTTTTCAACTGTCACACTATTTATTTG  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATTTTATGGGTTTTGCTTTTTTCAACTGTCACACTATTTATTTG  800

seq1  GTCCTTCTAAGTAAGTGGTCCAAATAGTCCTCTAACCTTTACGAAGCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTAAGTAAGTGGTCCAAATAGTCCTCTAACCTTTACGAAGCAAG  850

seq1  GTTATATATTAGTTTCATTTCAGCCATCCATTCAAATCTCGGATATTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTATATATTAGTTTCATTTCAGCCATCCATTCAAATCTCGGATA-TTTA  899

seq1  AGCATGGAGTTTCTATACAATGCCACTTCAAGTGTGTCTCTCCATCTCTA  949
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  AGCATGGAGTTTCTATACAATGCCACTTC-AGTGTGTCTCT-CATCTCTA  947

seq1  CCATACTGTTTAGGTGGTAGTTTTCTTTTTTGGGAGAATTTTATTACTGT  999
      ||||||||||||||| |||| |||||||||  |||| |||||| ||||||
seq2  CCATACTGTTTAGGT-GTAG-TTTCTTTTT--GGAG-ATTTTA-TACTGT  991

seq1  TTAAATCTCATAACTTCATTTCTGCTTTTGATTTAACTGTGGTAGGTCAT  1049
      ||||||||||||   |||||||||| |||||||| ||||| ||||   ||
seq2  TTAAATCTCATA--CTCATTTCTGC-TTTGATTT-ACTGT-GTAGTCAAT  1036

seq1  ATG--TGCCTAGATATTTATTCGCTATAGTTT  1079
      |||   ||||||| | ||  ||||||||||||
seq2  ATGGTGGCCTAGAAAATTTATCGCTATAGTTT  1068

seq1: chr3_106176052_106177134
seq2: B6Ng01-230N21.g_65_1144 (reverse)

seq1  TAGACCATTGAATGTGCTGAGATTGTATCCTGATTCACAGGAAATCATGT  50
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  TAGACCATTGAATGTGCTGAGATTGTATTCTGA-TCACAGGAAATCATGT  49

seq1  GACAAATATTTTCAGTTTCAACAGGCTCAGTGGCTGAAGGACAA-TAAAT  99
      ||||||||||||||||||| ||||||||||| |||| ||||||| |||||
seq2  GACAAATATTTTCAGTTTC-ACAGGCTCAGT-GCTG-AGGACAATTAAAT  96

seq1  TAGGAGGTGCCATAGTCTGGTAGATGGACATGGATGATTTCACTGGTTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGTGCCATAGTCTGGTAGATGGACATGGATGATTTCACTGGTTCC  146

seq1  TTCTGTTACTAGGGAAGTTCTCTCTGACTTCTACTTTAAAGAGAGATCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTACTAGGGAAGTTCTCTCTGACTTCTACTTTAAAGAGAGATCTG  196

seq1  AATGTACACAGTGCCAGTAAGTGACACTAGAATTATACTCATAGTATACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACACAGTGCCAGTAAGTGACACTAGAATTATACTCATAGTATACA  246

seq1  ATCCCCTTCATTCATTCAAAGTTTGCCTGGATAACCCAATACCTTCTCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTCATTCATTCAAAGTTTGCCTGGATAACCCAATACCTTCTCCT  296

seq1  CTCTTTTTTTAAAAATTCATTTATGTGTTCTTTCCAAAGTGAAAGACACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTAAAAATTCATTTATGTGTTCTTTCCAAAGTGAAAGACACT  346

seq1  TACCCCATCTCTTCAGTTCCATTAATTTATGTTACATACTTACTGGGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCATCTCTTCAGTTCCATTAATTTATGTTACATACTTACTGGGAAC  396

seq1  CAAGGCTACCTTGAACGTGAGGCAGGCTCTTCCAGGTCAATTAAGTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTACCTTGAACGTGAGGCAGGCTCTTCCAGGTCAATTAAGTATTT  446

seq1  AGGTTATTTGAGTCTCCAGAAACTATACTAACCCTCACTATCAGATTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTTGAGTCTCCAGAAACTATACTAACCCTCACTATCAGATTTTT  496

seq1  CTCCTCTTTGAACCATATCCTTAGAGTGTAAATCAGTTCCTTTGAGGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTGAACCATATCCTTAGAGTGTAAATCAGTTCCTTTGAGGGCT  546

seq1  TTTTACAGAAATACTTTGAAAGTGCTGACATGCATGTTTGTCCATATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAAATACTTTGAAAGTGCTGACATGCATGTTTGTCCATATTTT  596

seq1  CTGTAACATATAACATATTCTGAGATTTTCAACAAACCCATTTACCCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACATATAACATATTCTGAGATTTTCAACAAACCCATTTACCCAAT  646

seq1  GGGTATCAATAAACTGTTGCTTATGGCACTGATGGTAAAAGCAACATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCAATAAACTGTTGCTTATGGCACTGATGGTAAAAGCAACATTTT  696

seq1  AATTGCTAGTTCAGCCTGCTCTGAGGTAGGTTTTAGAGACCTGGATGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTAGTTCAGCCTGCTCTGAGGTAGGTTTTAGAGACCTGGATGTAG  746

seq1  GTTAACTCCAGGATGATGTTGCAAGTTCACTAAATACTATTTAGGGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTCCAGGATGATGTTGCAAGTTCACTAAATACTATTTAGGGATTT  796

seq1  ATTTTCTTATATAACCTGAAAGACATTGCAGTCAATGGCTTCTCTAGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTATATAACCTGAAAGACATTGCAGTCAATGGCTTCTCTAGTCC  846

seq1  ATGTTACTGAGATTGTTCTTTTCTTCCCCATTTGCCTCCATGGACACTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTGAGATTGTTCTTTTCTTCCCCATTTGCCTCCATGGACACTGC  896

seq1  TGTGTCTTGTTTTGTGTGGTTCAGGTTTCAGGGTTCCATATCAAAGGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTGTTTTGTGTGGTTCAGGTTTCAGGGTTCCATATCAAAGGGAG  946

seq1  GTTTAGCAAATAATTTGTCTTTGAAACTATCAGAATAACAGCAACTTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCAAATAATTTGTCTTTGAAACTATCAGAATAACAGCAACTTCCA  996

seq1  CACAAGCTTTAACACAGTGGATTTTGCATCATGCTTCAATGGAGAAAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTTTAACACAGTGGATTTTGCATCATGCTTCAATGGAGAAAAAT  1046

seq1  AGAACTAAATCTTGGGCTTGCCTTAACTGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  AGAACTAAATCTTGGGCTTGCCTTAACTGAATTC  1080