BAC Information

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BAC

Clone NameB6Ng01-231A22
Chromosome3 (Build37)
Map Location 90,238,406 - 90,355,675
singlet/doubletdoublet
Overlap geneNpr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16
Upstream genePygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3
Downstream geneEG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231A22.bB6Ng01-231A22.g
ACCGA043759GA043760
length1,0471,071
definitionB6Ng01-231A22.b B6Ng01-231A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,238,406 - 90,239,435)(90,354,616 - 90,355,675)
sequence
gaattccaagttccatagctactgttttgggagtgaagcactcttgaacc
caagctggcctcacttttgtggcattctttctgcctcccagggacttctg
tatcctaattacaaataaaataagacccggactggccgatctccaaatac
acttctggcattctacaatcctcctgagtaagctttgaataacttctagg
taaaggactgattcagcctcggaactacaaacaagtcattacaatagctt
aatataaccgggacacatgtattggatggaaagaagaaaaagaaagggcc
gggcgtggtggtgcacgcctttaatcccagcactcgggaggcagaggcag
gtggatttctcagttcgaggccagcctggtctacaaagtgagttccagga
cagccagggctacacagagaaaccctgtctcaaaaaaacaaaaaaaaaaa
aaaaaaaagaaaaaagaaaagaaggaaggaaaaaagatgtataatactga
atattctttccattttttttttttttttgaagtgtactgggtttgtttgt
ggtactgatgattgaactcaggaattcaaaataggtaaatgccctgccag
ggaacttccatgtgctttttttaattttaaaaattcatttattgtttttt
gagacacttgttcctatgtaggtaaggatgactttcctgatcctctcaag
agttaggactgcatgtgtgcaccaccacaattgtgctttatagcatcttt
aaataagcactgtatagtgtagtggggggctggcgctgggggtgcttgcc
ttccatctgcaaagctgcattcactcaggaaagtggtggcgcacgccctt
taatcccagcacttggggaggcagaggcaggcagaatttctgagttcgaa
ggtcagcctggtccaacagagtgagtttccagggacaggccagggcttac
aacagaagtagccctgtcttgaaaaaaaaaacaataataataataataat
agttaatataataactataaggaagagggaagaaaagagggagtgaa
gaattcaggaagaatcctgtgactagactttgtgctggctaggcttatgt
ccgcttgacacaaacaagagttatgttggaagagggaaattgagaaaata
tccccacaatattgtcccatcgaggagcctgcgtgcattttcttgattga
tgattgatgtagcaaagcccagcttactgtgggaagtgccaccctactgg
cgatcctgagagctatgagagcaggctgagcaagttatggagaacaagcc
ggtaacagtggcctcctccatggcctttccatcagctcctgcatccaggg
tcctgccctgacttcttcaatgatgaactgttacgtagaagtagaagaga
aaaaccaagttgcttttgttcatggtgtctcctcacagcaatagaaaccc
taagacacctgaataagacagcaaagaacacgaggacagaaaatatggac
ttgggatgtggtaaaattcagatacttccatgtgggagtgcgtttatcct
ttaactactgagcactggctacatggcaggtcctggaatgacacagtaaa
caagacaggaggaaatcatccctcgtgaggatcggagagatctcattgta
gagaagagaatgataaacaacattttagagatctataaatgctgtgtcaa
gaaaccaagcaggatggtggcatgggcctataatcccagcaattgaggag
gctgtagcttcacaagttcaaggcccacctgggaaacttcaaaaaagcct
gtctcaaagtaaagcttaagacaaagtgtgagggcacagctgggtgggac
ggtacctgcttagcatttgtaaggccctgggttcaatctttagtacaaaa
aaataaaaaaaaaaaaaaaacagtaggcaaggcaggtgacactcccagtg
agtaaacacaccccaaataagacaatggggcttccttgggggtgagtcat
tctttattgtttcttgtacatatgggtgtttataggatccctgggtggac
cctcaaagtacattcttctaagtgctagaaaccacttccttttctctcta
accttgctaaagagtataatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90238406_90239435
seq2: B6Ng01-231A22.b_47_1093

seq1  GAATTCCAAGTTCCATAGCTACTGTTTTGGGAGTGAAGCACTCTTGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTCCATAGCTACTGTTTTGGGAGTGAAGCACTCTTGAACC  50

seq1  CAAGCTGGCCTCACTTTTGTGGCATTCTTTCTGCCTCCCAGGGACTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGCCTCACTTTTGTGGCATTCTTTCTGCCTCCCAGGGACTTCTG  100

seq1  TATCCTAATTACAAATAAAATAAGACCCGGACTGGCCGATCTCCAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAATTACAAATAAAATAAGACCCGGACTGGCCGATCTCCAAATAC  150

seq1  ACTTCTGGCATTCTACAATCCTCCTGAGTAAGCTTTGAATAACTTCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGCATTCTACAATCCTCCTGAGTAAGCTTTGAATAACTTCTAGG  200

seq1  TAAAGGACTGATTCAGCCTCGGAACTACAAACAAGTCATTACAATAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACTGATTCAGCCTCGGAACTACAAACAAGTCATTACAATAGCTT  250

seq1  AATATAACCGGGACACATGTATTGGATGGAAAGAAGAAAAAGAAAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACCGGGACACATGTATTGGATGGAAAGAAGAAAAAGAAAGGGCC  300

seq1  GGGCGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  350

seq1  GTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCTCAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  400

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAAAAAAAAA  450

seq1  AAAAAAAAGAAAAAAGAAAAGAAGGAAGGAAAAAAGATGTATAATACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAAAGAAAAGAAGGAAGGAAAAAAGATGTATAATACTGA  500

seq1  ATATTCTTTCCATTTTTTTTTTTTTTTTGAAGTGTACTGGGTTTGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTTCCATTTTTTTTTTTTTTTTGAAGTGTACTGGGTTTGTTTGT  550

seq1  GGTACTGATGATTGAACTCAGGAATTCAAAATAGGTAAATGCCCTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGATGATTGAACTCAGGAATTCAAAATAGGTAAATGCCCTGCCAG  600

seq1  GGAACTTCCATGTGCTTTTTTTAATTTTAAAAATTCATTTATTGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCCATGTGCTTTTTTTAATTTTAAAAATTCATTTATTGTTTTTT  650

seq1  GAGACACTTGTTCCTATGTAGGTAAGGATGACTTTCCTGATCCTCTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTTGTTCCTATGTAGGTAAGGATGACTTTCCTGATCCTCTCAAG  700

seq1  AGTTAGGACTGCATGTGTGCACCACCACAATTGTGCTTTATAGCATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGACTGCATGTGTGCACCACCACAATTGTGCTTTATAGCATCTTT  750

seq1  AAATAAGCACTGTATAGTGTAGT-GGGGGCTGGCGCT-GGGGTGCTTGCC  798
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  AAATAAGCACTGTATAGTGTAGTGGGGGGCTGGCGCTGGGGGTGCTTGCC  800

seq1  TTCCATCTGCAAAGCTGCATTCACTCAGG-AAGTGGTGGCGCACG-CCTT  846
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TTCCATCTGCAAAGCTGCATTCACTCAGGAAAGTGGTGGCGCACGCCCTT  850

seq1  TAATCCCAGCACTT-GGGAGGCAGAGGCAGGCAG-ATTTCTGAGTTCG-A  893
      |||||||||||||| ||||||||||||||||||| ||||||||||||| |
seq2  TAATCCCAGCACTTGGGGAGGCAGAGGCAGGCAGAATTTCTGAGTTCGAA  900

seq1  GGTCAGCCTGGTCC-ACAGAGTGAG-TTCCA-GGACA-GCCAGGGC-TAC  938
      |||||||||||||| |||||||||| ||||| ||||| |||||||| |||
seq2  GGTCAGCCTGGTCCAACAGAGTGAGTTTCCAGGGACAGGCCAGGGCTTAC  950

seq1  -ACAG-AGTAGCCCTGTCTTG-AAAAAAAAACAATAATAATAATAATAAT  985
       |||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACAGAAGTAGCCCTGTCTTGAAAAAAAAAACAATAATAATAATAATAAT  1000

seq1  AGTAATAATAATAATAATAAAGGAAGA-GGAAG-AAAGA-GGAGTGAA  1030
      ||| |  |||||||  || |||||||| ||||| ||||| ||||||||
seq2  AGTTAATATAATAACTAT-AAGGAAGAGGGAAGAAAAGAGGGAGTGAA  1047

seq1: chr3_90354616_90355675
seq2: B6Ng01-231A22.g_69_1139 (reverse)

seq1  AATTATACTCCTTAGGCAAAGTTAGAGAG-AAAGGAAGTGGTTTCTTAGC  49
      |||||||||| ||| |||| ||||||||| ||||||||||||||| ||||
seq2  AATTATACTCTTTA-GCAAGGTTAGAGAGAAAAGGAAGTGGTTTC-TAGC  48

seq1  AACCTTTAGA--GATGTACTTTGAGGG-CCACC--GGGATCCTATAAACA  94
      |    |||||   |||||||||||||| |||||  |||||||||||||||
seq2  A---CTTAGAAGAATGTACTTTGAGGGTCCACCCAGGGATCCTATAAACA  95

seq1  -CCATATGTAC-AGAAAC-ATAAAG-ATGACTCA-CCCCAAGG-AGCCCC  138
       |||||||||| |||||| |||||| |||||||| |||||||| ||||||
seq2  CCCATATGTACAAGAAACAATAAAGAATGACTCACCCCCAAGGAAGCCCC  145

seq1  ATTGTCTTATT--GGGTGTGTTTACTCACTTGGAGTGTCACCTGCC-TGC  185
      |||||||||||  ||||||||||||||||| ||||||||||||||| |||
seq2  ATTGTCTTATTTGGGGTGTGTTTACTCACTGGGAGTGTCACCTGCCTTGC  195

seq1  CTACTG-TTTTTTTTTTTTTTTATTTTTTTGTACTAAAGATTGAACCCAG  234
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTTTTTTTTTTTTTTATTTTTTTGTACTAAAGATTGAACCCAG  245

seq1  GGCCTTACAAATGCTAAGCAGGTACCGTCCCACCCAGCTGTGCCCTCACA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACAAATGCTAAGCAGGTACCGTCCCACCCAGCTGTGCCCTCACA  295

seq1  CTTTGTCTTAAGCTTTACTTTGAGACAGGCTTTTTTGAAGTTTCCCAGGT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTAAGCTTTACTTTGAGACAGGCTTTTTTGAAGTTTCCCAGGT  345

seq1  GGGCCTTGAACTTGTGAAGCTACAGCCTCCTCAATTGCTGGGATTATAGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGAACTTGTGAAGCTACAGCCTCCTCAATTGCTGGGATTATAGG  395

seq1  CCCATGCCACCATCCTGCTTGGTTTCTTGACACAGCATTTATAGATCTCT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCACCATCCTGCTTGGTTTCTTGACACAGCATTTATAGATCTCT  445

seq1  AAAATGTTGTTTATCATTCTCTTCTCTACAATGAGATCTCTCCGATCCTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGTTTATCATTCTCTTCTCTACAATGAGATCTCTCCGATCCTC  495

seq1  ACGAGGGATGATTTCCTCCTGTCTTGTTTACTGTGTCATTCCAGGACCTG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGATGATTTCCTCCTGTCTTGTTTACTGTGTCATTCCAGGACCTG  545

seq1  CCATGTAGCCAGTGCTCAGTAGTTAAAGGATAAACGCACTCCCACATGGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAGCCAGTGCTCAGTAGTTAAAGGATAAACGCACTCCCACATGGA  595

seq1  AGTATCTGAATTTTACCACATCCCAAGTCCATATTTTCTGTCCTCGTGTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGAATTTTACCACATCCCAAGTCCATATTTTCTGTCCTCGTGTT  645

seq1  CTTTGCTGTCTTATTCAGGTGTCTTAGGGTTTCTATTGCTGTGAGGAGAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTCTTATTCAGGTGTCTTAGGGTTTCTATTGCTGTGAGGAGAC  695

seq1  ACCATGAACAAAAGCAACTTGGTTTTTCTCTTCTACTTCTACGTAACAGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAACAAAAGCAACTTGGTTTTTCTCTTCTACTTCTACGTAACAGT  745

seq1  TCATCATTGAAGAAGTCAGGGCAGGACCCTGGATGCAGGAGCTGATGGAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTGAAGAAGTCAGGGCAGGACCCTGGATGCAGGAGCTGATGGAA  795

seq1  AGGCCATGGAGGAGGCCACTGTTACCGGCTTGTTCTCCATAACTTGCTCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGGAGGAGGCCACTGTTACCGGCTTGTTCTCCATAACTTGCTCA  845

seq1  GCCTGCTCTCATAGCTCTCAGGATCGCCAGTAGGGTGGCACTTCCCACAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCTCATAGCTCTCAGGATCGCCAGTAGGGTGGCACTTCCCACAG  895

seq1  TAAGCTGGGCTTTGCTACATCAATCATCAATCAAGAAAATGCACGCAGGC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGGCTTTGCTACATCAATCATCAATCAAGAAAATGCACGCAGGC  945

seq1  TCCTCGATGGGACAATATTGTGGGGATATTTTCTCAATTTCCCTCTTCCA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGATGGGACAATATTGTGGGGATATTTTCTCAATTTCCCTCTTCCA  995

seq1  ACATAACTCTTGTTTGTGTCAAGCGGACATAAGCCTAGCCAGCACAAAGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTCTTGTTTGTGTCAAGCGGACATAAGCCTAGCCAGCACAAAGT  1045

seq1  CTAGTCACAGGATTCTTCCTGAATTC  1060
      ||||||||||||||||||||||||||
seq2  CTAGTCACAGGATTCTTCCTGAATTC  1071