BAC Information

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BAC

Clone NameB6Ng01-231A23
Chromosome3 (Build37)
Map Location 13,636,304 - 13,750,100
singlet/doubletdoublet
Overlap gene0710005M24Rik, LOC100041667, LOC100039882
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231A23.bB6Ng01-231A23.g
ACCGA043761GA043762
length1,1251,094
definitionB6Ng01-231A23.b B6Ng01-231A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,636,304 - 13,637,439)(13,749,000 - 13,750,100)
sequence
gaattcattctctgtggtctgaaatatttactggacttcaagttcaactt
caagaatatatatatatatacatattcttgtggatacatagagtagcttt
tgtaatatatattgttgaagttgacttgatactaagttgatctactaggg
atgaaaataaagaatttagaaaaaacactggcagggaaataagtaaaatg
aagcctttgaaatgttgctttcaaaccacagaaccagtaaaggttacaaa
ggcacatttataaaagcacttctccattcataatgacaaggatctccatg
ttattagaattgtgacaatacttccaaataagcaaaatgcaagaaaactc
tccagcatcaaataatgaggaataattaagggcaagtaggcttgtgtaaa
ctgaaatacgataattgggggcaggatctggagaactatttgaaagagag
gaatatgagttatttctatgctcaaaaaaccttttccagctctctttgtt
cagtggaaaaatggagttcttctggagggagacgtaaatcttcactctga
gaaactctggtagagccataccaacatggtttgctataagcagtgttaca
gggatgtatcagtacccagttaataactcaaattgattgcttactttata
ggaggctctgggtccaactccagcagcacacaaagtgtgcgtggtcatat
tcacttgtgatcccagcacttgattaatggaagaaggatttagaagttca
aggacattctccaaagcacaggcaattcaaagctaccctaggttagagac
cttgtcccctgagggaaaaaagaataatgaatttagttccatatgaaata
gataatgatgctatgctctaatttagttcattgatcttggaatatgtatt
gatgacatttattagtttatgataattttgtttttggcaatttcatacat
gcatgcaatgcattttgattataatcacctgccattctaccctccagttt
cctttcagatttgccacttgtgtcctttcccactacacatcatcttcttt
aaaacaaacaaacaacaacaacaaaacaccacacacaatggatgctgctt
gtgtgtgcattggaatgtgtccaga

gaattccagccatcactctctctctcatgtgggtggtcactgaggcgctg
ttctgtaggttctcatagtcctccgaccaggcgaccttgctgccgcagca
gccattgtggcagtccctatccatcctctggcctgtccccacgctgccgc
tgcggagctccatctgtgcccccccgaccccaccccatccgcggccctgc
tgggaggctggatgtctcaaccaaccttaacaaacatcttaagtgtatta
gtaaaaagtaactgtccattgtttccaacggtaaaaatgacaaatagttt
tagaatatcttttctattttatccttaacacggtttctaattattttaga
aataaaaactatttttatggttgccaatagttggcataatgttctttcta
ataagtcctctgttgctcatgtgggaggagaaaaaaaaaaaaaaaaaaag
actgacttctgcattcaaagttcgagagactcaagacagctgagagttcc
atcgactataactagtgtaaacagacaatagcatttgggtatgatttggg
taaagcgttcagatttccaggaagagcaaggtgtaaataggtgagagtaa
tttagatgagcttactaaagggattatttttagaggtacgtggaatttat
atcaccatggaaggatatggaaagctctgtgtggagaaactcaaggaaat
gcagcctgaggagatcagatgagagccacgcaagagaaaccgttccaaag
agagagagacagtgccgagggcacctgcgaacaggcttcctgttagaatg
cacatcaaaggaagtcatagaacttttcaaaccctgtgaaggagttgttt
atattctaggaatcttcgattgcttttatttatcatgggctcagacactt
atttttaagttaaactgtgtggtctgtatattacagtatttatgagaccg
ggcttcataatgtgactgtgtagaacaaatgcttaccacagttcagtcat
gtgttctgtcttaactaggtattgattatactcctgtctcataactctgg
ccctcatctgcccatcggtcactgaacattgtataaatctcgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13636304_13637439
seq2: B6Ng01-231A23.b_44_1168

seq1  GAATTCATTCTCTGTGGTCTGAAATATTTACTGGACTTCAAGTTCAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCTGTGGTCTGAAATATTTACTGGACTTCAAGTTCAACTT  50

seq1  CAAGAATATATATATATATACATATTCTTGTGGATACATAGAGTAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATATATATATATACATATTCTTGTGGATACATAGAGTAGCTTT  100

seq1  TGTAATATATATTGTTGAAGTTGACTTGATACTAAGTTGATCTACTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATATATTGTTGAAGTTGACTTGATACTAAGTTGATCTACTAGGG  150

seq1  ATGAAAATAAAGAATTTAGAAAAAACACTGGCAGGGAAATAAGTAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATAAAGAATTTAGAAAAAACACTGGCAGGGAAATAAGTAAAATG  200

seq1  AAGCCTTTGAAATGTTGCTTTCAAACCACAGAACCAGTAAAGGTTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTGAAATGTTGCTTTCAAACCACAGAACCAGTAAAGGTTACAAA  250

seq1  GGCACATTTATAAAAGCACTTCTCCATTCATAATGACAAGGATCTCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTTATAAAAGCACTTCTCCATTCATAATGACAAGGATCTCCATG  300

seq1  TTATTAGAATTGTGACAATACTTCCAAATAAGCAAAATGCAAGAAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAATTGTGACAATACTTCCAAATAAGCAAAATGCAAGAAAACTC  350

seq1  TCCAGCATCAAATAATGAGGAATAATTAAGGGCAAGTAGGCTTGTGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATCAAATAATGAGGAATAATTAAGGGCAAGTAGGCTTGTGTAAA  400

seq1  CTGAAATACGATAATTGGGGGCAGGATCTGGAGAACTATTTGAAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATACGATAATTGGGGGCAGGATCTGGAGAACTATTTGAAAGAGAG  450

seq1  GAATATGAGTTATTTCTATGCTCAAAAAACCTTTTCCAGCTCTCTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAGTTATTTCTATGCTCAAAAAACCTTTTCCAGCTCTCTTTGTT  500

seq1  CAGTGGAAAAATGGAGTTCTTCTGGAGGGAGACGTAAATCTTCACTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAAAATGGAGTTCTTCTGGAGGGAGACGTAAATCTTCACTCTGA  550

seq1  GAAACTCTGGTAGAGCCATACCAACATGGTTTGCTATAAGCAGTGTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTGGTAGAGCCATACCAACATGGTTTGCTATAAGCAGTGTTACA  600

seq1  GGGATGTATCAGTACCCAGTTAATAACTCAAATTGATTGCTTACTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTATCAGTACCCAGTTAATAACTCAAATTGATTGCTTACTTTATA  650

seq1  GGAGGCTCTGGGTCCAACTCCAGCAGCACACAAAGTGTGCGTGGTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCTGGGTCCAACTCCAGCAGCACACAAAGTGTGCGTGGTCATAT  700

seq1  TCACTTGTGATCCCAGCACTTGATTAATGGAAGAAGGATTTAGAAGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTGATCCCAGCACTTGATTAATGGAAGAAGGATTTAGAAGTTCA  750

seq1  AGGACATTCTCCAAAGCACAGGCAATTCAAAGCTACCCTAGGTTAGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTCTCCAAAGCACAGGCAATTCAAAGCTACCCTAGGTTAGAGAC  800

seq1  CTTGTCCCCTGAGGGAAAAAAGAATAATGAATTTAGTTCCATATGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCCTGAGGGAAAAAAGAATAATGAATTTAGTTCCATATGAAATA  850

seq1  GATAATGATGCTATGCTCTAATTTAGTTCATTGATCTTGGAATATGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGATGCTATGCTCTAATTTAGTTCATTGATCTTGGAATATGTATT  900

seq1  GATGACATTTATTAGTTTATGATAATTTTGTTTTTGGCAAATTTCATACA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATGACATTTATTAGTTTATGATAATTTTGTTTTTGGC-AATTTCATACA  949

seq1  TGCATGCAATGCATTTTGATTATAATCACCTGCCATTCTACCCTCCAG-T  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCATGCAATGCATTTTGATTATAATCACCTGCCATTCTACCCTCCAGTT  999

seq1  TCCTTTCAGATTTGCCACTTGTGTCCCTTTCCCAACTACACATCATTCTT  1049
      |||||||||||||||||||||||| |||||||| ||||||||||| ||||
seq2  TCCTTTCAGATTTGCCACTTGTGT-CCTTTCCC-ACTACACATCA-TCTT  1046

seq1  CTTTAAAACAAACAAACAAACAAACAAACAAAAACAACAACAACA-ACA-  1097
      |||||||||||||||||         ||||| ||||| |||| || ||| 
seq2  CTTTAAAACAAACAAAC---------AACAACAACAA-AACACCACACAC  1086

seq1  AATGAATGCTGCCTTTGTGTGCATTGGGATGTGTCCAGA  1136
      |||| ||||||| | |||||||||||| |||||||||||
seq2  AATGGATGCTGCTTGTGTGTGCATTGGAATGTGTCCAGA  1125


seq1: chr3_13749000_13750100
seq2: B6Ng01-231A23.g_69_1162 (reverse)

seq1  AACGAGGATTTATACATATGTTCAGTGACAGATGGGGGCAGATGAGGGGC  50
      ||||| |||||||||| |||||||||||| |||  ||||||||||||| |
seq2  AACGA-GATTTATACA-ATGTTCAGTGACCGAT--GGGCAGATGAGGGCC  46

seq1  AGAGGTAATGAGAACAGGGAGTATAATCAAATACCTAAGTAAAGACAGAA  100
      ||| || ||||| ||| ||||||||||| ||||||| ||| |||||||||
seq2  AGA-GTTATGAG-ACA-GGAGTATAATC-AATACCT-AGTTAAGACAGAA  91

seq1  CACAATGACTGACTTGTGGTAAGCATTTG-TCT--ACAGTCAACATATGA  147
      ||| ||||||||  ||||||||||||||| |||  |||||||   |||||
seq2  CAC-ATGACTGAACTGTGGTAAGCATTTGTTCTACACAGTCACATTATGA  140

seq1  AGCC---GCTCATAAATACTGTTAATATACAGAACCACACAGTTTAACCT  194
      ||||    ||||||||||||| |||||||||| |||||||||||||| ||
seq2  AGCCCGGTCTCATAAATACTG-TAATATACAG-ACCACACAGTTTAA-CT  187

seq1  TAAAAATAAGTGTCTGAGCCCATGATAAATAAAAGCAATCGAAGATTCCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGTGTCTGAGCCCATGATAAATAAAAGCAATCGAAGATTCCT  237

seq1  AGAATATAAACAACTCCTTCACAGGGTTTGAAAAGTTCTATGACTTCCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAACAACTCCTTCACAGGGTTTGAAAAGTTCTATGACTTCCTT  287

seq1  TGATGTGCATTCTAACAGGAAGCCTGTTCGCAGGTGCCCTCGGCACTGTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGCATTCTAACAGGAAGCCTGTTCGCAGGTGCCCTCGGCACTGTC  337

seq1  TCTCTCTCTTTGGAACGGTTTCTCTTGCGTGGCTCTCATCTGATCTCCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTGGAACGGTTTCTCTTGCGTGGCTCTCATCTGATCTCCTC  387

seq1  AGGCTGCATTTCCTTGAGTTTCTCCACACAGAGCTTTCCATATCCTTCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCATTTCCTTGAGTTTCTCCACACAGAGCTTTCCATATCCTTCCA  437

seq1  TGGTGATATAAATTCCACGTACCTCTAAAAATAATCCCTTTAGTAAGCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATATAAATTCCACGTACCTCTAAAAATAATCCCTTTAGTAAGCTC  487

seq1  ATCTAAATTACTCTCACCTATTTACACCTTGCTCTTCCTGGAAATCTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATTACTCTCACCTATTTACACCTTGCTCTTCCTGGAAATCTGAA  537

seq1  CGCTTTACCCAAATCATACCCAAATGCTATTGTCTGTTTACACTAGTTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTACCCAAATCATACCCAAATGCTATTGTCTGTTTACACTAGTTAT  587

seq1  AGTCGATGGAACTCTCAGCTGTCTTGAGTCTCTCGAACTTTGAATGCAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGATGGAACTCTCAGCTGTCTTGAGTCTCTCGAACTTTGAATGCAGA  637

seq1  AGTCAGTCTTTTTTTTTTTTTTTTTTTCTCCTCCCACATGAGCAACAGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCTTTTTTTTTTTTTTTTTTTCTCCTCCCACATGAGCAACAGAG  687

seq1  GACTTATTAGAAAGAACATTATGCCAACTATTGGCAACCATAAAAATAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTAGAAAGAACATTATGCCAACTATTGGCAACCATAAAAATAGT  737

seq1  TTTTATTTCTAAAATAATTAGAAACCGTGTTAAGGATAAAATAGAAAAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTAAAATAATTAGAAACCGTGTTAAGGATAAAATAGAAAAGA  787

seq1  TATTCTAAAACTATTTGTCATTTTTACCGTTGGAAACAATGGACAGTTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAAACTATTTGTCATTTTTACCGTTGGAAACAATGGACAGTTAC  837

seq1  TTTTTACTAATACACTTAAGATGTTTGTTAAGGTTGGTTGAGACATCCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTAATACACTTAAGATGTTTGTTAAGGTTGGTTGAGACATCCAG  887

seq1  CCTCCCAGCAGGGCCGCGGATGGGGTGGGGTCGGGGGGGCACAGATGGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGCAGGGCCGCGGATGGGGTGGGGTCGGGGGGGCACAGATGGAG  937

seq1  CTCCGCAGCGGCAGCGTGGGGACAGGCCAGAGGATGGATAGGGACTGCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCAGCGGCAGCGTGGGGACAGGCCAGAGGATGGATAGGGACTGCCA  987

seq1  CAATGGCTGCTGCGGCAGCAAGGTCGCCTGGTCGGAGGACTATGAGAACC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTGCTGCGGCAGCAAGGTCGCCTGGTCGGAGGACTATGAGAACC  1037

seq1  TACAGAACAGCGCCTCAGTGACCACCCACATGAGAGAGAGAGTGATGGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACAGCGCCTCAGTGACCACCCACATGAGAGAGAGAGTGATGGCT  1087

seq1  GGAATTC  1101
      |||||||
seq2  GGAATTC  1094


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