BAC Information

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BAC

Clone NameB6Ng01-231E18
Chromosome3 (Build37)
Map Location 56,295,285 - 56,296,480
singlet/doubletsinglet
Overlap genenone
Upstream geneDclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231E18.bB6Ng01-231E18.g
ACCGA043933GA043934
length1,1991,179
definitionB6Ng01-231E18.b B6Ng01-231E18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctactaacacgtactaaaattggaaatgaacaaagatcgagc
taaatctttttgtgcatgtatctgtgcattgtgtgcacatgtgtgtatag
tgcagcagcatcatgagcctgaagtgactgatagtgatgtcttaaagatg
ataagatgatgatgataatcatgacataaatgtggcatttgaacccaacc
aagctgtttctcacattttacttcattctttgcctgttacccttagtgct
gtctcatatattttagacttccattgctgcaacattccatcgctgctccc
tgccattagcgtcctgctccatcgcactcttggagaatatcaactgccct
gtgaattgaccctgcaattatgaccatgtgctttaggaaagtttctgcac
gttataaacacatcagtgagccagcggatgtgataatgataaaattacac
tgtcttgctttcagcagtttgctgaaagtcactcacaagggaatgcttct
tggtctaagggcaaatttcttggtcaccagttcttatagtgactgaaact
ctgagaggcagagagattggatcccaaggggtgatgatccctgcatttgt
cttaacttgcattaattctgtaagaaatagaagcataatattaataggac
cctcagaggttcttttgctcattgaatttagataaattattaatattcct
tttttctaaactaaaattttccctggctggagattgtcaagttgagcact
aatatgccttgaagggtataagcagacacaaagggaagtagattttttaa
aaatcccgtttatatgccacgacacaccattccaggagcatggggacaat
tctgctctgacaacatcatgttactctacatataaccttaactgtgcagc
atgtgtgtgcataatgtgcgtttgggaaaggcaaaaccactacttaccat
tttagggaacatctaggaccactctgtatagatatagacattcaactggg
gttcttttttttttccattaaattttaatttatttactttatgtctggga
tacagcttcccctttctcttctctctagtctttccctctcccccttccct
gacccattccaccccacttttcctcctcagagaagagatctcccatgcat
agctactgcttggtcattcaagttgcagtaggactacttataggttttc

gaattctagaaagtctttaatttcttcatttatttcttccttgacacagt
agtcattcagtggagagttgttcagtttccatgagtttgtaaatctttca
cttccttgtgttgttgttggatcccagctttaatccatggatttataata
agagaaggggggcgcagtttcttgtctctgttgagacttgcttttttgcc
aagtatgtggtcaattttggggaagattccttgagtgctgagaagaaggg
atatgcttttgttatttgggtaaatagttttgtagatacttattggtaca
tatgagtataacatgttagtttcattatttctctttttagtttctgacta
gatgatgtgtctattgatcagaatatggtgttgtagtctcccactattaa
tatatggagtttgatgtgagatttaagctttagtgatgtttcccatgcat
ttggagcatatatgttcagaactgagatgtcatcttggtgaatttttcct
ttaatgtgtataaagtgttgttccatatctcttttgattaattttggttg
aaagcctattttgttagattttagaatggctataccaacttgcttatttg
atccattagcttggaaaatctttttccaaccctttactctgaggtaatgt
ctacctttgatgttgaggtatatttcctgtatgcaaaaaactgatggatt
ctttttcacattgattctattagtctatgtatttttactgggaaattgag
tttattgatgttgagtgatagcaatcaaccaaagatggttgattcctgtt
attttgatgttggtggtagctgtgtatatgtgtgcttctcttctttggtt
ttgctggcatgaattatttatttcctgtgttttgttgggtgtagttaaat
tccctgggttgggctttccttctagtaccttctgtagtgctggatttgta
gatagaatattgtttaaatttggttttattatggaattatcctgtttttc
tccatttatgtgatgaaaattttgctgactaatagtagtctgggctgcat
ctgtgatcctcttaagatctgcccaaatatataagcctctggctttagag
tctctttttggaatggtacaatcttaatataaacgtcaatccttatattt
tactgaaccttttcctgcagcacttcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56295285_56296480
seq2: B6Ng01-231E18.b_44_1242

seq1  GAATTCACCTACTAACACGTACTAAAATTGGAAATGAACAAAGATCGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTACTAACACGTACTAAAATTGGAAATGAACAAAGATCGAGC  50

seq1  TAAATCTTTTTGTGCATGTATCTGTGCATTGTGTGCACATGTGTGTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTTTGTGCATGTATCTGTGCATTGTGTGCACATGTGTGTATAG  100

seq1  TGCAGCAGCATCATGAGCCTGAAGTGACTGATAGTGATGTCTTAAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGCATCATGAGCCTGAAGTGACTGATAGTGATGTCTTAAAGATG  150

seq1  ATAAGATGATGATGATAATCATGACATAAATGTGGCATTTGAACCCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGATGATGATAATCATGACATAAATGTGGCATTTGAACCCAACC  200

seq1  AAGCTGTTTCTCACATTTTACTTCATTCTTTGCCTGTTACCCTTAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTCTCACATTTTACTTCATTCTTTGCCTGTTACCCTTAGTGCT  250

seq1  GTCTCATATATTTTAGACTTCCATTGCTGCAACATTCCATCGCTGCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATATATTTTAGACTTCCATTGCTGCAACATTCCATCGCTGCTCCC  300

seq1  TGCCATTAGCGTCCTGCTCCATCGCACTCTTGGAGAATATCAACTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTAGCGTCCTGCTCCATCGCACTCTTGGAGAATATCAACTGCCCT  350

seq1  GTGAATTGACCCTGCAATTATGACCATGTGCTTTAGGAAAGTTTCTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTGACCCTGCAATTATGACCATGTGCTTTAGGAAAGTTTCTGCAC  400

seq1  GTTATAAACACATCAGTGAGCCAGCGGATGTGATAATGATAAAATTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAACACATCAGTGAGCCAGCGGATGTGATAATGATAAAATTACAC  450

seq1  TGTCTTGCTTTCAGCAGTTTGCTGAAAGTCACTCACAAGGGAATGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCTTTCAGCAGTTTGCTGAAAGTCACTCACAAGGGAATGCTTCT  500

seq1  TGGTCTAAGGGCAAATTTCTTGGTCACCAGTTCTTATAGTGACTGAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAAGGGCAAATTTCTTGGTCACCAGTTCTTATAGTGACTGAAACT  550

seq1  CTGAGAGGCAGAGAGATTGGATCCCAAGGGGTGATGATCCCTGCATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCAGAGAGATTGGATCCCAAGGGGTGATGATCCCTGCATTTGT  600

seq1  CTTAACTTGCATTAATTCTGTAAGAAATAGAAGCATAATATTAATAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTGCATTAATTCTGTAAGAAATAGAAGCATAATATTAATAGGAC  650

seq1  CCTCAGAGGTTCTTTTGCTCATTGAATTTAGATAAATTATTAATATTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGGTTCTTTTGCTCATTGAATTTAGATAAATTATTAATATTCCT  700

seq1  TTTTTCTAAACTAAAATTTTCCCTGGCTGGAGATTGTCAAGTTGAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAAACTAAAATTTTCCCTGGCTGGAGATTGTCAAGTTGAGCACT  750

seq1  AATATGCCTTGAAGGGTATAAGCAGACACAAAGGGAAGTAGATTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCTTGAAGGGTATAAGCAGACACAAAGGGAAGTAGATTTTTTAA  800

seq1  AAATCCCGTTTATATGCCACGACACACCATTCCAGGAGCATGGGGACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCGTTTATATGCCACGACACACCATTCCAGGAGCATGGGGACAAT  850

seq1  TCTGCTCTGACAACATCATGTTACTCTACATATAACCTTAACTGTGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTGACAACATCATGTTACTCTACATATAACCTTAACTGTGCAGC  900

seq1  ATGTGTGTGCATAATGTGCGTTTGGGAAAGGCAAAACCACTACTTACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGCATAATGTGCGTTTGGGAAAGGCAAAACCACTACTTACCAT  950

seq1  TTTAGGGAACATCTAGGACCACTCTGTATAGATATAGACATTC-ACT-GG  998
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TTTAGGGAACATCTAGGACCACTCTGTATAGATATAGACATTCAACTGGG  1000

seq1  GTTC--TTTTTTTTCCATTAA--TTTTATTTATTTACTTTATGTCTGGAT  1044
      ||||  |||||||||||||||  ||| |||||||||||||||||||||  
seq2  GTTCTTTTTTTTTTCCATTAAATTTTAATTTATTTACTTTATGTCTGGGA  1050

seq1  TACAGCTTCCCCTTCCTCTTCTCCTCCTAGTCCTTTCCTCT-CCCCTCCC  1093
      |||||||||||||| ||||||||   |||||| || ||||| ||||| ||
seq2  TACAGCTTCCCCTTTCTCTTCTC--TCTAGTCTTTCCCTCTCCCCCTTCC  1098

seq1  CTGACCCCATTCCCACCCACTTT--CTCCTCAGAGGAGGGAAGATCTCCC  1141
      |||| ||||||||  ||||||||  |||||||||| ||   |||||||||
seq2  CTGA-CCCATTCCACCCCACTTTTCCTCCTCAGAGAAG---AGATCTCCC  1144

seq1  ATGGATAGCTACCTGCCTTGGCATATCAAGTTGCAGTAGGACTACTTAT-  1190
      ||| ||||||| |||| | | ||| |||||||||||||||||||||||| 
seq2  ATGCATAGCTA-CTGCTTGGTCAT-TCAAGTTGCAGTAGGACTACTTATA  1192

seq1  -GTTTTC  1196
       ||||||
seq2  GGTTTTC  1199


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