BAC Information

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BAC

Clone NameB6Ng01-231I18
Chromosome3 (Build37)
Map Location 95,135,014 - 95,259,182
singlet/doubletdoublet
Overlap geneSetdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
Upstream geneThem4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2
Downstream geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231I18.bB6Ng01-231I18.g
ACCGA044118GA044119
length978171
definitionB6Ng01-231I18.b B6Ng01-231I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,258,631 - 95,259,182)(95,135,014 - 95,135,184)
sequence
gaattctctaatgaagacattcccaatagtcctgtgtgaaaatgctatct
taggggtggaaaaatggctcagttattaagaacagttgctgcttttgcag
aggacctgggttcagttcacagtactaacatagctccagaccttaacaca
attgatcccttgatagaagaaccattcaggttgtgaaattcagtatgtat
acagcactacctaccaaaactaaaacaaaggcctaatccatcaaagtctg
cagttctgggaaagtctctttggcttctgcagttctgcttctggctaact
gttcttgttaactgaagtatgccaacaacacagaacatactgtcgtgttt
aaaagctcaccctgagaaaggctgagtgctgcattggaatcccaaacacc
agtgtagttgctggcaggctaatagtaactttctattggattaaatccat
atccaagcatcctctggtggatactccataacaccaacacccatatggca
gctcacaatcatctataactcctagtactagaggacccaactccctcttc
tggcctctgccagcacgatatacacacttacaggtaaaacacttaagata
aaaatagataaatccagcagtaacaatgaaagcttgcctagggcaaaaag
tgaaatcttttttcttcttcacatttattaggatccactaagtatcagaa
gaattacgtttaattgctgtgctggttcgtttctatcaatttgacacaaa
cctagacatctgagaagagggaatcccaactgagacaatgtctctatcag
agtggcctgtgggcaagccagtgtaatattattttgattattgattgatg
aggaaagtctatctcactacctcccctgcgcaggtagtcctagagacatc
cacttgggccacacaaccaaccaaggccacacctaacccttcaaaaaaag
gtctaccaactggggagcaagcactcaa
taggccatacctagggaaagcctattgggaattagggggctattcatatt
tgttatcagcacaggaagccatcagagtaactatactaagtatcatttat
tcattccttaaaatgtctttcagtggctactctgtaacactgcactaggt
agtgggatgggggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95258631_95259182
seq2: B6Ng01-231I18.b_45_596 (reverse)

seq1  CAGAAGAGGGAGTTGGGTCCTCTAGTACTAGGAGTTATAGATGATTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGAGTTGGGTCCTCTAGTACTAGGAGTTATAGATGATTGTGA  50

seq1  GCTGCCATATGGGTGTTGGTGTTATGGAGTATCCACCAGAGGATGCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATATGGGTGTTGGTGTTATGGAGTATCCACCAGAGGATGCTTGG  100

seq1  ATATGGATTTAATCCAATAGAAAGTTACTATTAGCCTGCCAGCAACTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATTTAATCCAATAGAAAGTTACTATTAGCCTGCCAGCAACTACA  150

seq1  CTGGTGTTTGGGATTCCAATGCAGCACTCAGCCTTTCTCAGGGTGAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTGGGATTCCAATGCAGCACTCAGCCTTTCTCAGGGTGAGCTT  200

seq1  TTAAACACGACAGTATGTTCTGTGTTGTTGGCATACTTCAGTTAACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACGACAGTATGTTCTGTGTTGTTGGCATACTTCAGTTAACAAGA  250

seq1  ACAGTTAGCCAGAAGCAGAACTGCAGAAGCCAAAGAGACTTTCCCAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGCCAGAAGCAGAACTGCAGAAGCCAAAGAGACTTTCCCAGAAC  300

seq1  TGCAGACTTTGATGGATTAGGCCTTTGTTTTAGTTTTGGTAGGTAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTTGATGGATTAGGCCTTTGTTTTAGTTTTGGTAGGTAGTGCT  350

seq1  GTATACATACTGAATTTCACAACCTGAATGGTTCTTCTATCAAGGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATACTGAATTTCACAACCTGAATGGTTCTTCTATCAAGGGATCA  400

seq1  ATTGTGTTAAGGTCTGGAGCTATGTTAGTACTGTGAACTGAACCCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTAAGGTCTGGAGCTATGTTAGTACTGTGAACTGAACCCAGGTC  450

seq1  CTCTGCAAAAGCAGCAACTGTTCTTAATAACTGAGCCATTTTTCCACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAAAGCAGCAACTGTTCTTAATAACTGAGCCATTTTTCCACCCC  500

seq1  TAAGATAGCATTTTCACACAGGACTATTGGGAATGTCTTCATTAGAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGCATTTTCACACAGGACTATTGGGAATGTCTTCATTAGAGAAT  550

seq1  TC  552
      ||
seq2  TC  552

seq1: chr3_95135014_95135184
seq2: B6Ng01-231I18.g_73_243

seq1  TAGGCCATACCTAGGGAAAGCCTATTGGGAATTAGGGGGCTATTCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCATACCTAGGGAAAGCCTATTGGGAATTAGGGGGCTATTCATATT  50

seq1  TGTTATCAGCACAGGAAGCCATCAGAGTAACTATACTAAGTATCATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAGCACAGGAAGCCATCAGAGTAACTATACTAAGTATCATTTAT  100

seq1  TCATTCCTTAAAATGTCTTTCAGTGGCTACTCTGTAACACTGCACTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTAAAATGTCTTTCAGTGGCTACTCTGTAACACTGCACTAGGT  150

seq1  AGTGGGATGGGGGTGGGGTGG  171
      |||||||||||||||||||||
seq2  AGTGGGATGGGGGTGGGGTGG  171