BAC Information

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BAC

Clone NameB6Ng01-231N11
Chromosome3 (Build37)
Map Location 44,383,485 - 44,384,622
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231N11.bB6Ng01-231N11.g
ACCGA044331GA044332
length1,2161,130
definitionB6Ng01-231N11.b B6Ng01-231N11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataatatggcccataccttctgtttgaagccactatagggatgg
agaagaatgtttttggttgtttttctgcttgctttcaccttgctagaaag
tccattattaactagcattacagcttatttatttatgcttccagcatcta
ttgaaaactagctaagacatccaacactttaaaccaagaaacttgtggat
tcttgaatttttttttcacagacagccattgttggattatctgtactatt
gtgatttaaaaagatatggcacccataaattgtttgagtgcctaggtcat
aaggagtgatacttttagaaggtgtgaccttgttggaagaagtctgtcgc
tgtggttgtgggctttgaggttgcatatgtttaagctatgctcagtgtgg
gacatagtatcctgctgcctacaatatctagatgtagaactctcagatgc
ctttctccagtaccatgtttgcctgtatgctgtctgcttctaaacatgat
gataatggataaagccccgaaagcataaaaatccttaaaagactaaggat
gcaagcaacacgttgtaatataataaatgtggtatagagcaagcttacat
gtcattatcctaaaaagtgagaaactcaattaattttactaaaatccaga
acaagaccagtttgtctactctctccataccaatttaatatatacttaaa
atctatactagagcaataagacaactgaaggagatgaatgagatacaatt
aggtatggaagaagtcaacatattcttatcaggagctaataggattttat
aaaaacaaattttgagaacaccacttggaaattgctataacttatgaaca
atttctccaaagtagcaggataccatattaagacaaaagaccactaacct
ttctatataaacaggtagactaataaagaaattaggaaaacaatacattc
aaacaacctcaaaaataaaatagactaattctaggcaagcaagcagaaac
ttataataaaaaagttgaagacatttaaaaagaacaagatggaagacttc
atgccaacagattgttgtgattagtataaacaaatgggccacatcaagcc
atttatatatcaatgtaatcctcatcgaatagtattgatgtgaggaccta
attctacaatagtcgaaaatatatcgggagaaataaccaattattgtccc
accaaataatattctc

gaattccaggagtgggaagatgtcttagaacttctcaatatttatttaat
atttctcaaaggaagattttactttttgattagtcggtcacagtatcaat
ggaaatgctatttctcacactgggattctaacttctctggacatggtagt
tgattcctatagacctctaactctcacagaggacacccacaactctgaca
gagattccattaaagtaccaattaaatcaaattcttaaaatattttctga
aaattactacttatgaatctactgtgtattagcaagcaggtatattattt
ttcccaatgctgtgctaattggtctgtatgaagtttactgaagtgtccta
tggccaatctcttccttggctccatcaaacagtacacctcactctcttgc
ttttcctacttcactcagtgaatctatctcttaatgtaatgtgcttccat
taattgtattattagttcatttcattaagtttaactctcaaataaaattc
tttggagaatgagattattttctacatattatgtttcttcccatttgtat
gtttattctacatattcaaaccatgacgacgatttatctatatgtttaac
aaatagttgttgaattaatgactgcttttcgagaattcatttcagaggtc
tgaggcaatgatatctcttactaatttagtacaagtactctgctatcaga
atacatatgtacttatcaataactttattaaattatgatacatgtataga
gagctgaactacattaatgagcttcttaaatcaagagagagaaaaacaaa
tacagtctagactcattttcatgtttccagaaagattaattacattcatg
tcactactgctttagaaatctgatataaagaatgaaacatatgtcttcat
tttatttaattaacttacaaactaatcataaaatgaaatatttaataaaa
tcatgcatatacaaaattatgatgctttcagtaatctgaattttccagca
tcgcagtttcagtaagtgtagaaaacatttacttctcttcattgtttaag
atgtgtgaaacattgctatttaagctctgtgagacttaattttaacctag
gctatgaaatcgcttgaaatagacgagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44383485_44384622
seq2: B6Ng01-231N11.g_68_1197

seq1  GAATTCCAGGAGTGGGAAGATGTCTTAGAACTTCTCAATATTTATTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGTGGGAAGATGTCTTAGAACTTCTCAATATTTATTTAAT  50

seq1  ATTTCTCAAAGGAAGATTTTACTTTTTGATTAGTCGGTCACAGTATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAAAGGAAGATTTTACTTTTTGATTAGTCGGTCACAGTATCAAT  100

seq1  GGAAATGCTATTTCTCACACTGGGATTCTAACTTCTCTGGACATGGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCTATTTCTCACACTGGGATTCTAACTTCTCTGGACATGGTAGT  150

seq1  TGATTCCTATAGACCTCTAACTCTCACAGAGGACACCCACAACTCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTATAGACCTCTAACTCTCACAGAGGACACCCACAACTCTGACA  200

seq1  GAGATTCCATTAAAGTACCAATTAAATCAAATTCTTAAAATATTTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCATTAAAGTACCAATTAAATCAAATTCTTAAAATATTTTCTGA  250

seq1  AAATTACTACTTATGAATCTACTGTGTATTAGCAAGCAGGTATATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTACTTATGAATCTACTGTGTATTAGCAAGCAGGTATATTATTT  300

seq1  TTCCCAATGCTGTGCTAATTGGTCTGTATGAAGTTTACTGAAGTGTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATGCTGTGCTAATTGGTCTGTATGAAGTTTACTGAAGTGTCCTA  350

seq1  TGGCCAATCTCTTCCTTGGCTCCATCAAACAGTACACCTCACTCTCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATCTCTTCCTTGGCTCCATCAAACAGTACACCTCACTCTCTTGC  400

seq1  TTTTCCTACTTCACTCAGTGAATCTATCTCTTAATGTAATGTGCTTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTACTTCACTCAGTGAATCTATCTCTTAATGTAATGTGCTTCCAT  450

seq1  TAATTGTATTATTAGTTCATTTCATTAAGTTTAACTCTCAAATAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATTATTAGTTCATTTCATTAAGTTTAACTCTCAAATAAAATTC  500

seq1  TTTGGAGAATGAGATTATTTTCTACATATTATGTTTCTTCCCATTTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAATGAGATTATTTTCTACATATTATGTTTCTTCCCATTTGTAT  550

seq1  GTTTATTCTACATATTCAAACCATGACGACGATTTATCTATATGTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTACATATTCAAACCATGACGACGATTTATCTATATGTTTAAC  600

seq1  AAATAGTTGTTGAATTAATGACTGCTTTTCGAGAATTCATTTCAGAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGTTGAATTAATGACTGCTTTTCGAGAATTCATTTCAGAGGTC  650

seq1  TGAGGCAATGATATCTCTTACTAATTTAGTACAAGTACTCTGCTATCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAATGATATCTCTTACTAATTTAGTACAAGTACTCTGCTATCAGA  700

seq1  ATACATATGTACTTATCAATAACTTTATTAAATTATGATACATGTATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGTACTTATCAATAACTTTATTAAATTATGATACATGTATAGA  750

seq1  GAGCTGAACTACATTAATGAGCTTCTTAAATCAAGAGAGAGAAAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAACTACATTAATGAGCTTCTTAAATCAAGAGAGAGAAAAACAAA  800

seq1  TACAGTCTAGACTCATTTTCATGTTTCCAGAAAGATTAATTACATTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTAGACTCATTTTCATGTTTCCAGAAAGATTAATTACATTCATG  850

seq1  TCACTACTGCTTTAGAAATCTGATATAAAGAATGAAACATATGTCTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACTGCTTTAGAAATCTGATATAAAGAATGAAACATATGTCTTCAT  900

seq1  TTTATTTAATTAACTTACAAACTAATCATAAAATGAAAATATTTAATAAA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTATTTAATTAACTTACAAACTAATCATAAAATG-AAATATTTAATAAA  949

seq1  ATCATGCATATACAAAAATTATGATGCTTTCAGTAATCTGAATTTTCCAG  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCATGCATATAC-AAAATTATGATGCTTTCAGTAATCTGAATTTTCCAG  998

seq1  CAATCGCAGTTTCAGTAAGTGTAG-AAACATTTACTTCTCTTCATTGTTT  1049
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  C-ATCGCAGTTTCAGTAAGTGTAGAAAACATTTACTTCTCTTCATTGTTT  1047

seq1  AAGATGTGTGAAACAATTGCTATTTAAGCTCTGTGAGGACTTAAATTTAA  1099
      |||||||||||||| ||||||||||||||||||||| ||||||| |||||
seq2  AAGATGTGTGAAAC-ATTGCTATTTAAGCTCTGTGA-GACTTAATTTTAA  1095

seq1  ACCCTA-GCTATGAAATCGCTGGAAAATTAAGACGAGCCC  1138
        |||| |||||||||||||| ||||    ||||||||||
seq2  --CCTAGGCTATGAAATCGCTTGAAA---TAGACGAGCCC  1130


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