BAC Information

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BAC

Clone NameB6Ng01-231N13
Chromosome3 (Build37)
Map Location 6,267,031 - 6,267,980
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231N13.bB6Ng01-231N13.g
ACCGA044335GA044336
length1,1761,100
definitionB6Ng01-231N13.b B6Ng01-231N13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactgcatggattcagaactcttcagctggggaacagtggtatt
ggtaagtaaagagaaattaatgtgagtctctgagaggtatgctttcctat
gcagtaggtctggtaattgttgctggggttgtgttgcttgttttctttct
tgtcctgagactggtcagtctatccaggataagaaatgtgaaccagctgt
taaggaagggcagcaacttttgcaggagtaccaagaaggcatattagtaa
cagagagaaatgaaaaagaagacgcacgcagaaaaataagtaacttaaga
aatataaaaagagaaaaagaaaggataatataaaatataaagatacaaag
gataatataaaaatataaagatacaaaggataatataaaaaatgaagaac
aaaaaaataagtcaatttaccctcctctcgaggactttgactaaagaggc
agccttcatcaaaggcttaatgatagctcttagggaaagaggagtaacta
ttagaagcagccactgtgcagaattcccagaagaaggaaagaaaaaaatg
aaaataaggtatttcagagccctcctagggacagaaggaaaacttgagac
atcctgcttcctctctggctcctaagttaactgcactgtggctgggagtc
aagtacagctgaaaaagccctgctgagggccattgcaaatggagctctta
aaggggcaggcggccttttgcttgtacctggcgcctattcaagggaaggc
aaccgactcccacaggctatgtcctggggaggatatggaatgtatatgaa
ggcctctatctcaaaccagtcattaggtaactaggagaattaaaacttct
ttaaaaaacaaaaacaaattcaacattcctatagaaacagcactttggag
tagccagtgttaggtgctagcatcaattaaccacagagcaatactttcct
ttcccacttagtctaccaacagagatgtgctaagtggctacgttggcagg
agaagaatagaaaattcctgaagcatgtttttagccatctcatgttgttg
tgggcaacgaccaagcttttctgaatgttcctgtaggaatagcctgaagc
tcacacaaacaagctggaaatattgtctatgcgtgtaaacgctcagcaat
ttatttagatgccaccttcccgtggg

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggttaggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggaatttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtagctggttttaagttaagttccttgg
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgtcatcctg
agtgaggtaacacattcacaaaggaactcacacaatatgtactcactgat
aagtggatattagcccaaaacctaggatacccaagatataagatacaatt
tcctaaacacatgaaacttaagaaaaatgaagactgaagtgtggacacta
tgcccctccttagaagtggaaacaaaacacccatggaaggagttacagag
acaaagtttggagctgagatgaaaggatggaccatgtagagactgccata
tccagggatccaccccataatcagcatccaaacgctgacaccattgcata
tactagcaagattttatcgaaaggacccagatgtagctgtctcttgtgag
actatgccgggggcctagcaaacacagaagtggatgctcacagtcagcta
atggatggatcacagggctcccaatgggaggagctagagaaagtacccaa
ggtgctaaagggattcttcaacccttataggtggaacaacatatgaacta
cccagtaccccggagcttcttgactctagctgcatatgtatcaagatgcc
ctagtcgcatcactgaagaaagcccattgacatgcaactttatattgccc
agtacaggttacctcaaggcaaaaggggggatgtggggtgggtaagggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6267031_6267980
seq2: B6Ng01-231N13.b_539_1223

seq1  GAGTAACTATTAGAAGCAGCTACTGTGCAGAATTCCCAGAAGAAGGA---  47
      |||||||||||||||||||| ||||||||||||||||||||||||||   
seq2  GAGTAACTATTAGAAGCAGCCACTGTGCAGAATTCCCAGAAGAAGGAAAG  50

seq1  GAAAAAATGAAAATAAGCTATTTCAGAGCCCTCCTAGTAACAGAAGGAAA  97
       |||||||||||||||| |||||||||||||||||||  |||||||||||
seq2  AAAAAAATGAAAATAAGGTATTTCAGAGCCCTCCTAGGGACAGAAGGAAA  100

seq1  ACGGGAGATGTCCTGCTTCCTCTCTGGCTCCTATGGAGATATTTTTAGCT  147
      ||  ||||  |||||||||||||||||||||                   
seq2  ACTTGAGACATCCTGCTTCCTCTCTGGCTCC-------------------  131

seq1  CCTGATAGGATATCTGTGTCCCTTTGAGACATCAAGTTCTATTCCCTGTC  197
                                                        
seq2  --------------------------------------------------  131

seq1  TGTCTATTGTCTGTTTTTGGTGCACCAAATTGTCCATATGTCTGTCAATT  247
                                                        
seq2  --------------------------------------------------  131

seq1  CATGTTTGCTTTTGTTTGGATGTTTGAAAGTGTTGTTCTGTGTTTCATGT  297
                                                        
seq2  --------------------------------------------------  131

seq1  TGAAAAATATAATTAGTTAAAACTTTATCTGCTGGCTGTCCATCCTTTAA  347
                                                        
seq2  --------------------------------------------------  131

seq1  CTTGTTTAAAAAGCAGTCTCTTTTTGCACAGCAGAAACTGATAAGTTAGC  397
                                               ||||||| |
seq2  -----------------------------------------TAAGTTAAC  140

seq1  TGCACTGTGGCTGGGAGTCAAGTACAGCTGAAAAAGCCCTGCTGAGGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTGGCTGGGAGTCAAGTACAGCTGAAAAAGCCCTGCTGAGGGCC  190

seq1  AATTGCAAATGGAGCTCTTAAAGGGGAAGACAGCCTTTTGCTTGTACCTG  497
       ||||||||||||||||||||||||| || | ||||||||||||||||||
seq2  -ATTGCAAATGGAGCTCTTAAAGGGGCAGGCGGCCTTTTGCTTGTACCTG  239

seq1  GCTCCTATTCAAGGGAAGGCAACCGACTCCCACAGGCTATGTCCTGGGGA  547
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTATTCAAGGGAAGGCAACCGACTCCCACAGGCTATGTCCTGGGGA  289

seq1  GGATACGAAATGTATATGAAGGCCTCTATCTCAAACCGGTCATTAGGTAA  597
      ||||| | ||||||||||||||||||||||||||||| ||||||||||||
seq2  GGATATGGAATGTATATGAAGGCCTCTATCTCAAACCAGTCATTAGGTAA  339

seq1  CTAGGACAATTAAAACTTCTTTAAAAAACAAAAACAAATTCAACATTCCT  647
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAATTAAAACTTCTTTAAAAAACAAAAACAAATTCAACATTCCT  389

seq1  ATAGAAACAGCATTTTGGAGTGGCCAGTGTTAGGTGCTAGCATCAATTAA  697
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  ATAGAAACAGCACTTTGGAGTAGCCAGTGTTAGGTGCTAGCATCAATTAA  439

seq1  CCACAGAGCAATACTTTCC-TTCCCACTTAGTCTACCAAACAAGAGATGT  746
      ||||||||||||||||||| |||||||||||||||||||   ||||||||
seq2  CCACAGAGCAATACTTTCCTTTCCCACTTAGTCTACCAA--CAGAGATGT  487

seq1  GCTAGGTGGCTACGTGGGCAGGAGAAGAAATAGAAAAAAATTCCTGGACG  796
      |||| |||||||||| ||||||||||| |||||   |||||||||| |  
seq2  GCTAAGTGGCTACGTTGGCAGGAGAAG-AATAG---AAAATTCCTGAAGC  533

seq1  ATGTTTTTAGCCATCTCAATGTTGTTGTGGGCAATGACCAAAGCTTTCTG  846
      ||||||||||||||||| |||||||||||||||| ||||||   ||||||
seq2  ATGTTTTTAGCCATCTC-ATGTTGTTGTGGGCAACGACCAAGCTTTTCTG  582

seq1  AATGTCCTGGTAGGAATAGCTCTGAAGCTCACACAAACAGAAGCTCGATA  896
      ||||| |  ||||||||||| |||||||||||||||||  ||||| || |
seq2  AATGTTCCTGTAGGAATAGC-CTGAAGCTCACACAAAC--AAGCTGGAAA  629

seq1  TATTGTCCTACAGTGTGATAAATGTGCAG-AATTTATT--AATG-CACCT  942
      |||||| |||  | ||| |||| |  ||| ||||||||   ||| |||||
seq2  TATTGT-CTA-TGCGTG-TAAACGCTCAGCAATTTATTTAGATGCCACCT  676

seq1  TCCC-TGGG  950
      |||| ||||
seq2  TCCCGTGGG  685


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