BAC Information

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BAC

Clone NameB6Ng01-232A23
Chromosome3 (Build37)
Map Location 66,208,489 - 66,209,577
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232A23.bB6Ng01-232A23.g
ACCGA044491GA044492
length9211,096
definitionB6Ng01-232A23.b B6Ng01-232A23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatatatatatattgaatattag
tcccctacctgatttaagataggtaaagatcctttcccaatctgttggtg
gtctttttgtcttattgatggtgtcttttgccttgcagaagctttgcagt
ttcatgaggtcccatttatcaatcctcgatcttaaagcacaagccattgc
tgttctattcaggaattttttccctgtgcccatatcttcgagacgtttcc
ccactttctcctctataaatttcagtgtctctggttttatgtggagttcc
ttgatccacttagatttgaccttagtacaaggagagaggaatggggcgat
tcgcattcttctacatgataacaaccagttgtgccagcaccatttgttga
aaattctgtcttttttcccctggatggttttagctcccttgtcgaagatc
aagtgaccataggtgtgtgggttcatttctgggtcttcaattctattcca
ttggtctacttgtctgtcactataccagtaccatgcagtttttatcacaa
ttgctctatagtaaagctttaggtcaggcatggtgattccaccagaggta
cttttatccttgagaagagcttttgctatcctaggttttttgttattcca
aatgaatttgcagattgctctttctaattcgttgaagaattgagttggaa
ttttgatggggattgcatttgaatctgtagattgcttttggcaagatagc
cattttttacaatgttgatcctgccaatccatgagcatggggagatcttt
ccatcttctgagatcttctttaatttctttcttcagggacttgaattttt
tatcatacagatctttcactt

gaattcagagagtcactttgtatcagagaggcatgagtcatgagctcagc
cttccaagaaggttcgtgaagggggagcccggggagagtgaatgcaatta
tctaaagcaatggcagcttcaataaaggatgacaaggggacagccaatga
aagagatactggagcatctgattaagaccccgaaggtaaaaacaatagtg
atcactctctagcttcctctgggggacatagacaggccaatgtcagcctc
gctcactctcctctctgagggcttcatggatgctcaccaggaaagaagcc
ttgctgacctttaactttagagcatttaattcattaatttaatatattgt
atgtacatgtgtgggcacacatggcatatgggcatcagaggacaacttgc
aaatctctccttccaccgtgtggttcctgggaatgggacttgagtcctca
ggcttggcagtaagagtctttgctcacggagccatctcaccaggctcatt
gctgaacttacacccacaaccaggtttgtgcaaagcacagggattgttcg
aaaccatgattaaagagctaacgaggctggttttgcaagtcagatgaaat
atttttcctaatgtaggacactcctgtgagctcacacacacgcacaaaca
cacacacactgatacgagctttttcttctagaccatattcctagtgagac
tgttgacagcttccagttacatacaatcacccttgaagggaagagaaaaa
aaaaaaaaaaaaaccaacaggtctatttttcaccccacacccaatacgat
gcccaaaacaggttttctttttgaggatctagtcagcacccccaagaagg
gctaacctatagcttggagccctacagagggcccacagtcttagacatgt
gatttcttcttcccctctgcctgactgcaagacaccctatcagttttata
ggctgtaagtaggagcaaggcactctgagaccttgaagaccaggaatcta
ggagagactgttctccttaaggcttgattggtgcctcagatgttggacca
gattctcagtacagcacaaggtcagaagcctgttgacaaagtatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_66208489_66209577
seq2: B6Ng01-232A23.g_68_1163

seq1  GAATTCAGAGAGTCACTTTGTATCAGAGAGGCATGAGTCATGAGCTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGTCACTTTGTATCAGAGAGGCATGAGTCATGAGCTCAGC  50

seq1  CTTCCAAGAAGGTTCGTGAAGGGGGAGCCCGGGGAGAGTGAATGCAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGAAGGTTCGTGAAGGGGGAGCCCGGGGAGAGTGAATGCAATTA  100

seq1  TCTAAAGCAATGGCAGCTTCAATAAAGGATGACAAGGGGACAGCCAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCAATGGCAGCTTCAATAAAGGATGACAAGGGGACAGCCAATGA  150

seq1  AAGAGATACTGGAGCATCTGATTAAGACCCCGAAGGTAAAAACAATAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATACTGGAGCATCTGATTAAGACCCCGAAGGTAAAAACAATAGTG  200

seq1  ATCACTCTCTAGCTTCCTCTGGGGGACATAGACAGGCCAATGTCAGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTCTAGCTTCCTCTGGGGGACATAGACAGGCCAATGTCAGCCTC  250

seq1  GCTCACTCTCCTCTCTGAGGGCTTCATGGATGCTCACCAGGAAAGAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCTCCTCTCTGAGGGCTTCATGGATGCTCACCAGGAAAGAAGCC  300

seq1  TTGCTGACCTTTAACTTTAGAGCATTTAATTCATTAATTTAATATATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACCTTTAACTTTAGAGCATTTAATTCATTAATTTAATATATTGT  350

seq1  ATGTACATGTGTGGGCACACATGGCATATGGGCATCAGAGGACAACTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATGTGTGGGCACACATGGCATATGGGCATCAGAGGACAACTTGC  400

seq1  AAATCTCTCCTTCCACCGTGTGGTTCCTGGGAATGGGACTTGAGTCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTCCTTCCACCGTGTGGTTCCTGGGAATGGGACTTGAGTCCTCA  450

seq1  GGCTTGGCAGTAAGAGTCTTTGCTCACGGAGCCATCTCACCAGGCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCAGTAAGAGTCTTTGCTCACGGAGCCATCTCACCAGGCTCATT  500

seq1  GCTGAACTTACACCCACAACCAGGTTTGTGCAAAGCACAGGGATTGTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTTACACCCACAACCAGGTTTGTGCAAAGCACAGGGATTGTTCG  550

seq1  AAACCATGATTAAAGAGCTAACGAGGCTGGTTTTGCAAGTCAGATGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGATTAAAGAGCTAACGAGGCTGGTTTTGCAAGTCAGATGAAAT  600

seq1  ATTTTTCCTAATGTAGGACACTCCTGTGAGCTCACACACACGCACAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTAATGTAGGACACTCCTGTGAGCTCACACACACGCACAAACA  650

seq1  CACACACACTGATACGAGCTTTTTCTTCTAGACCATATTCCTAGTGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTGATACGAGCTTTTTCTTCTAGACCATATTCCTAGTGAGAC  700

seq1  TGTTGACAGCTTCCAGTTACATACAATCACCCTTGAAGGGAAGAGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAGCTTCCAGTTACATACAATCACCCTTGAAGGGAAGAGAAAAA  750

seq1  AAAAAAAAAAAAACCAACAGGTCTATTTTTCACCCCACACCCAATACGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACCAACAGGTCTATTTTTCACCCCACACCCAATACGAT  800

seq1  GCCCAAAACAGGTTT--CTTTTGAGGATCTAGTCAGCACCCCCAAGAAGG  848
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  GCCCAAAACAGGTTTTCTTTTTGAGGATCTAGTCAGCACCCCCAAGAAGG  850

seq1  GCTAACCTATAGCTTGGAGCCCTACAGAGGG-CCACAGTCTTAGACATGT  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTAACCTATAGCTTGGAGCCCTACAGAGGGCCCACAGTCTTAGACATGT  900

seq1  GATTTCTTCTTCCCCTCTGCCTGACTGCAAGACACCC-ATCAG-TTTATA  945
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  GATTTCTTCTTCCCCTCTGCCTGACTGCAAGACACCCTATCAGTTTTATA  950

seq1  GGCTGTAAGTAGGAGCAAGGCACTCTGAGAACCTGAAGAACCAGGAATCT  995
      |||||||||||||||||||||||||||||| | ||||| |||||||||||
seq2  GGCTGTAAGTAGGAGCAAGGCACTCTGAGACCTTGAAG-ACCAGGAATCT  999

seq1  AGGAAGAGACTG-TCTCC-TAAGGCTTG-TTGGTGGCTCAGAGTGTTGGA  1042
      ||| |||||||| ||||| ||||||||| |||||| |||||| |||||||
seq2  AGG-AGAGACTGTTCTCCTTAAGGCTTGATTGGTGCCTCAGA-TGTTGGA  1047

seq1  CCCAGA-TCTCAGTACAGCAC-AGGTCAGGAGGCTG-TGACAAAGTATGG  1089
       ||||| |||||||||||||| ||||||| || ||| |||||||||||||
seq2  -CCAGATTCTCAGTACAGCACAAGGTCAGAAGCCTGTTGACAAAGTATGG  1096


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