BAC Information

Click to search

BAC

Clone NameB6Ng01-232D22
Chromosome3 (Build37)
Map Location 81,279,130 - 81,280,298
singlet/doubletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232D22.bB6Ng01-232D22.g
ACCGA044631GA044632
length1,1751,214
definitionB6Ng01-232D22.b B6Ng01-232D22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagctcccacactcacctctacctgagaattctcagggagcct
aaattagtttagaggatcaatttccattctcctgacaacacctgttcatt
cagcacttgagattccttaaatgcttccccacgctaatgaggcatttcag
gtaccctaagccccaagccaaagacctgtgcccattcttgatctccttac
ccttacccaccaaaaaacattataagccttcattcaccttaagtaaattg
atctacctaccaactgagggtccttgtgtgttttattctgcatacatact
cccagggctcccgaaccctctgtttgatgtctcctctgatcccactacct
tcatggattgtaacagcttatgatgcaaaaaaaggggatacccacaacac
ttccatagccagttgatacagtatgtgtgggattaagttacacttcattg
actgtgttttctaacaataatcacaagcacaaatccatctctacagcaag
gagacatatcattctatactacatagcttaagttaggctatcaggattgc
ttacacagttgcttcactcttacccataccagtctatgaatctaacttct
ccatcctgaagaggatgaataaatttaaggcacatagccatacaattcct
accaaggctcctggaagttgaatttccagaaattacatacaacatactca
aaagacacacaaagcatacacatagatacgaatgtacacacacaaatttg
taaatataaaaactggcatgctcaaatttgataccaaagacatctatagg
gaaatgaagaaatatggttgtctgtagatcaaagtataaagacaatctga
agcacagaacaataggcttggagatagtggggatagggagaaacaggtgg
aggtgacacaagaatggcaatcctttggtactaaagttgtacttagctat
gagtacggcttaggatttgaagaatcaaaagttccaatgcagtctgtcac
tgatacacctttcattatcagatctatcactgtacactgcttgtcagttt
atgacgatggattgcccaaatggtaaaatatttgtactgcctgagatgac
ttcagtagtaagaaactttcagcgtgactaatgctggagaattctttctc
ataagaatttttagtatagaataaa
gaattcagtattgcagagtgagcactaggtcaaatgagacattggctggt
gccacacaagctttgtgcctctagcatatcttgcaggtagggcaatgtgg
tagattaaagagtttctggctcagttgatgtttccccttctcctttggta
tcattcagaatagcttcctgaacccaagacactattatataggagtgaag
gctttttgtaggcagcaactcaactgttgcacccacaatgacttgtgtag
atgttgtcttcagtaaagggacgtttccttgcagagagcagcccatagtt
ttggcaacagcttagtgtgatgagaattttagttttcttttaaacataga
aatgttatgtgaatgtggttttatttcaatcccagggatggggtgtggga
cttttttagattgtccatagcagcagactattatttgctctgtgccttga
gagagacatgattttgtgagctgcagatagtttttcaagtgtatgccatc
tggaattctggggattcttgagatggtataaaaatattagagccctgaga
ggagtgactgagatgctccccctacctctgctgctgctgctgcacttgct
gttggttgctggttgctggttgctagttgctggttggaaatatcctgaag
atgaagatcagacttgttccaaggaacttgatgactctaatcagcaggaa
gtagtctaatgctatatagatgacccctttcccctctaacttttctttcc
tacctagtacttgggaattggcagagtggagaagggtagtaggaaaagag
cctcaataaagtagcctaaagcccagttatagctaaggttgtttgcaagt
ttgctacatgaccacatttgtccaacagttcaattagatataaatcattc
ctagtattgggaagcttaattggtaaatacagattttcagttggaggatc
tgtctcccctcattatttaccagtttcacttaataattttcatatatgaa
tatattttaggaagcttcttacttattgtgagtggtgcacacactcctta
aatgggcccttaggttaagatttccctcccttatatctcccatcgatttc
aatcccctccataccaattgatgctccaccacattccattctgtccttcg
gtcatcccactctattaattcatatccatttctagagagaatgctatctg
gtccgtccgagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81279130_81280298
seq2: B6Ng01-232D22.b_51_1225 (reverse)

seq1  TTTA-TCTATACTATAAAT--CTATGAGAAGGA--TCTCAGGCCATTAGT  45
      |||| ||||||||| ||||   |||||||| ||  ||||  | |||||||
seq2  TTTATTCTATACTAAAAATTCTTATGAGAAAGAATTCTCCAG-CATTAGT  49

seq1  CACGCTGAAAAGTTTCTTTACCTACTG-AGTCATCTCA-GCAGTACAATT  93
      ||||||| ||||||||||   |||||| |||||||||| ||||||||| |
seq2  CACGCTG-AAAGTTTCTT--ACTACTGAAGTCATCTCAGGCAGTACAAAT  96

seq1  ATTTTA-CATTT-GGCATTCCATCCTTCAT-AACTGAC-AGCAGTTGTTA  139
      |||||| ||||| |||| ||||| | |||| ||||||| ||||||   ||
seq2  ATTTTACCATTTGGGCAATCCAT-CGTCATAAACTGACAAGCAGT--GTA  143

seq1  CAGTTGATAGATCTGAT-ATGAAA-GTGTATCAGTGACAGACTGCATTGG  187
      ||| ||||||||||||| |||||| |||||||||||||||||||||||||
seq2  CAG-TGATAGATCTGATAATGAAAGGTGTATCAGTGACAGACTGCATTGG  192

seq1  AACTTTTGATTCTTCAATTCCTAAGCCGTACTCATAGCTAAGTAC-ACCT  236
      ||||||||||||||||| ||||||||||||||||||||||||||| || |
seq2  AACTTTTGATTCTTCAAATCCTAAGCCGTACTCATAGCTAAGTACAACTT  242

seq1  TAGTACCAAAGGATTGCCATTCTTGTGTCACCTCCACCTGTTTCTCCCTA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCAAAGGATTGCCATTCTTGTGTCACCTCCACCTGTTTCTCCCTA  292

seq1  TCCCCACTATCTCCAAGCCTATTGTTCTGTGCTTCAGATTGTCTTTATAC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTATCTCCAAGCCTATTGTTCTGTGCTTCAGATTGTCTTTATAC  342

seq1  TTTGATCTACAGACAACCATATTTCTTCATTTCCCTATAGATGTCTTTGG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTACAGACAACCATATTTCTTCATTTCCCTATAGATGTCTTTGG  392

seq1  TATCAAATTTGAGCATGCCAGTTTTTATATTTACAAATTTGTGTGTGTAC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTTGAGCATGCCAGTTTTTATATTTACAAATTTGTGTGTGTAC  442

seq1  ATTCGTATCTATGTGTATGCTTTGTGTGTCTTTTGAGTATGTTGTATGTA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTATCTATGTGTATGCTTTGTGTGTCTTTTGAGTATGTTGTATGTA  492

seq1  ATTTCTGGAAATTCAACTTCCAGGAGCCTTGGTAGGAATTGTATGGCTAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGAAATTCAACTTCCAGGAGCCTTGGTAGGAATTGTATGGCTAT  542

seq1  GTGCCTTAAATTTATTCATCCTCTTCAGGATGGAGAAGTTAGATTCATAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTAAATTTATTCATCCTCTTCAGGATGGAGAAGTTAGATTCATAG  592

seq1  ACTGGTATGGGTAAGAGTGAAGCAACTGTGTAAGCAATCCTGATAGCCTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTATGGGTAAGAGTGAAGCAACTGTGTAAGCAATCCTGATAGCCTA  642

seq1  ACTTAAGCTATGTAGTATAGAATGATATGTCTCCTTGCTGTAGAGATGGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGCTATGTAGTATAGAATGATATGTCTCCTTGCTGTAGAGATGGA  692

seq1  TTTGTGCTTGTGATTATTGTTAGAAAACACAGTCAATGAAGTGTAACTTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTTGTGATTATTGTTAGAAAACACAGTCAATGAAGTGTAACTTA  742

seq1  ATCCCACACATACTGTATCAACTGGCTATGGAAGTGTTGTGGGTATCCCC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACATACTGTATCAACTGGCTATGGAAGTGTTGTGGGTATCCCC  792

seq1  TTTTTTTGCATCATAAGCTGTTACAATCCATGAAGGTAGTGGGATCAGAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCATCATAAGCTGTTACAATCCATGAAGGTAGTGGGATCAGAG  842

seq1  GAGACATCAAACAGAGGGTTCGGGAGCCCTGGGAGTATGTATGCAGAATA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCAAACAGAGGGTTCGGGAGCCCTGGGAGTATGTATGCAGAATA  892

seq1  AAACACACAAGGACCCTCAGTTGGTAGGTAGATCAATTTACTTAAGGTGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACAAGGACCCTCAGTTGGTAGGTAGATCAATTTACTTAAGGTGA  942

seq1  ATGAAGGCTTATAATGTTTTTTGGTGGGTAAGGGTAAGGAGATCAAGAAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCTTATAATGTTTTTTGGTGGGTAAGGGTAAGGAGATCAAGAAT  992

seq1  GGGCACAGGTCTTTGGCTTGGGGCTTAGGGTACCTGAAATGCCTCATTAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGGTCTTTGGCTTGGGGCTTAGGGTACCTGAAATGCCTCATTAG  1042

seq1  CGTGGGGAAGCATTTAAGGAATCTCAAGTGCTGAATGAACAGGTGTTGTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGAAGCATTTAAGGAATCTCAAGTGCTGAATGAACAGGTGTTGTC  1092

seq1  AGGAGAATGGAAATTGATCCTCTAAACTAATTTAGGCTCCCTGAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGGAAATTGATCCTCTAAACTAATTTAGGCTCCCTGAGAATTC  1142

seq1  TCAGGTAGAGGTGAGTGTGGGAGCTCAGAATTC  1169
      |||||||||||||||||||||||||||||||||
seq2  TCAGGTAGAGGTGAGTGTGGGAGCTCAGAATTC  1175