BAC Information

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BAC

Clone NameB6Ng01-232F18
Chromosome3 (Build37)
Map Location 156,041,714 - 156,168,096
singlet/doubletdoublet
Overlap genenone
Upstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
Downstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853, LOC546818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232F18.bB6Ng01-232F18.g
ACCGA044717GA044718
length1,1151,073
definitionB6Ng01-232F18.b B6Ng01-232F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,041,714 - 156,042,848)(156,167,035 - 156,168,096)
sequence
gaattcttaaacaaagctcaaccctgaatctgtccttttgcatttttctt
ttgttttctgccacttaccttgctgttggcctaaatcatgttcaccattc
ttagttttcaatcagtatattcacttttggttttaattgtagttcaattt
ggctttaattctctacactttgctgctgtgtttttgttgttgtttttgga
ttccaagaataaggatcagtgttgtttctaaattcctgttcttgtaaaca
acaatgcattgagtattctcacagattttcaggttttcaagcatgtgagg
cagaattctacattctgtggtatttgccccattgtgatccctccctgaat
atgttacattgcccagcagatagctttgcacatgtaaatgagaagcccta
aaatagaaaggtattatcatattgcttcagtggggttcgcataatggcag
gtattcatagaaggatggtgatttctcctgatggcaatataagagaaatt
cgatgtggtatttgaagcagaagatttcaacgttttgttgatttaaaggc
aaagtggcaagagaaaagggaatttagtcagaagactccaagtggctgac
ttagcagaacagcttgtgtgaggctagacagggagaacagggagcaaagc
atcagctgagggcctgatctcatcattcatttgactctgcattcgtgggg
acctccacaaaaatcctagctaaatcatgttgtatctgagcacacatgca
tttgataacataaacttgtgctttggcttattggctgattagatttttaa
aatttaattcgtattaactgcactgacaaaccaagactgagcatgtcagt
ccttgtttacatgtttaccctgatgatgcttaaggtggtgtgagtatagc
ttttacctcaaattcttattatgtctctttagaaagaaagttcaaacttg
taacatctgaaaaattcattactatcatataaagcatctaccatgcacag
cacacaggcttctacttcatccaacagcaattagttccatcatccactct
ctcatccttccctcccactctctcactctggagaggcttatcatatcaat
ttatacatgaaattt
gaattcaaggcttttcccaccttctcttctatcaaagtgaatgtatctgg
tcttatgctgaggtgtttgatacatatgaagttgagttttgtgcaaggca
ataaatatggatcaattttcacttttctgttttgttcaagtagccatcca
gtttgaccagcaccaattgcaaagctgctgtctttttttttttttcctag
tatataattctggcttctttattgggtgtcagaaggtatgtggacttatg
tctacctcttcatttagattccctggatcaatatgtatcttttttatgct
aataccttgctgtgtgcttctttatatctctgtagtacaacttgaaattc
aggatgatttcagcagttctggaggagtgttttagttattctggttcatt
attcagagctgtcttagttacagtgtttttcttgtatatccatttaaagt
gaaaattgcttttcaattccagtgaaaaactgtgttaaaattttgatgag
gattgtattaaatctctcacacacaaatttcaaaatttcaaatttatata
tgccttaaattctatataacacaaagtaactgaatataactgattttagc
ttgtaaaacaagaagttttaaattttgaacactcaattatgttattctat
gtagtttagattttgctcaaactccagctgataatattctgcactattag
ataatctctaacaattcaacacttttcaattataatttatatttgtgtta
gttatcattatgattttttttccaatgactgcttactattgtttcctgta
tcttcagcatacatatagaaaaaacactaaatttctgagaaacaataatt
tcagttaaattatacatagtatgtataatatgtcttacttgacaattaga
ctcttattagtggtttcttcttactggatcctatatttcctacctaccaa
tacatgttctaatctcgtgctaagcctgctgatttcagtgcggagtatgc
catcttgggcagagaaatgggtcttgttggcagctaagataagattcact
ctgttcatttcagaatttagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156041714_156042848
seq2: B6Ng01-232F18.b_46_1160

seq1  GAATTCTTAAACAAAGCTCAACCCTGAATCTGTCCTTTTGCATTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAACAAAGCTCAACCCTGAATCTGTCCTTTTGCATTTTTCTT  50

seq1  TTGTTTTCTGCCACTTACCTTGCTGTTGGCCTAAATCATGTTCACCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTGCCACTTACCTTGCTGTTGGCCTAAATCATGTTCACCATTC  100

seq1  TTAGTTTTCAATCAGTATATTCACTTTTGGTTTTAATTGTAGTTCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCAATCAGTATATTCACTTTTGGTTTTAATTGTAGTTCAATTT  150

seq1  GGCTTTAATTCTCTACACTTTGCTGCTGTGTTTTTGTTGTTGTTTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAATTCTCTACACTTTGCTGCTGTGTTTTTGTTGTTGTTTTTGGA  200

seq1  TTCCAAGAATAAGGATCAGTGTTGTTTCTAAATTCCTGTTCTTGTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAATAAGGATCAGTGTTGTTTCTAAATTCCTGTTCTTGTAAACA  250

seq1  ACAATGCATTGAGTATTCTCACAGATTTTCAGGTTTTCAAGCATGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATTGAGTATTCTCACAGATTTTCAGGTTTTCAAGCATGTGAGG  300

seq1  CAGAATTCTACATTCTGTGGTATTTGCCCCATTGTGATCCCTCCCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTACATTCTGTGGTATTTGCCCCATTGTGATCCCTCCCTGAAT  350

seq1  ATGTTACATTGCCCAGCAGATAGCTTTGCACATGTAAATGAGAAGCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACATTGCCCAGCAGATAGCTTTGCACATGTAAATGAGAAGCCCTA  400

seq1  AAATAGAAAGGTATTATCATATTGCTTCAGTGGGGTTCGCATAATGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAGGTATTATCATATTGCTTCAGTGGGGTTCGCATAATGGCAG  450

seq1  GTATTCATAGAAGGATGGTGATTTCTCCTGATGGCAATATAAGAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATAGAAGGATGGTGATTTCTCCTGATGGCAATATAAGAGAAATT  500

seq1  CGATGTGGTATTTGAAGCAGAAGATTTCAACGTTTTGTTGATTTAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTGGTATTTGAAGCAGAAGATTTCAACGTTTTGTTGATTTAAAGGC  550

seq1  AAAGTGGCAAGAGAAAAGGGAATTTAGTCAGAAGACTCCAAGTGGCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCAAGAGAAAAGGGAATTTAGTCAGAAGACTCCAAGTGGCTGAC  600

seq1  TTAGCAGAACAGCTTGTGTGAGGCTAGACAGGGAGAACAGGGAGCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAACAGCTTGTGTGAGGCTAGACAGGGAGAACAGGGAGCAAAGC  650

seq1  ATCAGCTGAGGGCCTGATCTCATCATTCATTTGACTCTGCATTCGTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGAGGGCCTGATCTCATCATTCATTTGACTCTGCATTCGTGGGG  700

seq1  ACCTCCACAAAAATCCTAGCTAAATCATGTTGTATCTGAGCACACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACAAAAATCCTAGCTAAATCATGTTGTATCTGAGCACACATGCA  750

seq1  TTTGATAACATAAACTTGTGCTTTGGCTTATTGGCTGATTAGATTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACATAAACTTGTGCTTTGGCTTATTGGCTGATTAGATTTTTAA  800

seq1  AATTTAATTCGTATTAACTGCACTGACAAACCAAGACTGAGCATGTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTCGTATTAACTGCACTGACAAACCAAGACTGAGCATGTCAGT  850

seq1  CCTTGTTTACATGTTTACCCTGATGATGCTTAAGGTGGTGTGAGTATAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTACATGTTTACCCTGATGATGCTTAAGGTGGTGTGAGTATAGC  900

seq1  TTTTACCTCAAATTCTTATTATGTCTCTTTAGAAAGAAAGTTCAAAACTT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTACCTCAAATTCTTATTATGTCTCTTTAGAAAGAAAGTTC-AAACTT  949

seq1  GTAACATCTGAAAAATTCATTACTATCATATAAAGCATCTACCATGCAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAACATCTGAAAAATTCATTACTATCATATAAAGCATCTACCATGC-AC  998

seq1  AGCACACAGGGCTTCCTACTTCCATCCAACAGCAATTAGTTCCCATCAAT  1050
      |||||||| ||||| |||||| |||||||||||||||||||||     ||
seq2  AGCACACA-GGCTT-CTACTT-CATCCAACAGCAATTAGTTCC-----AT  1040

seq1  CAACCTCTCTC-CATCCCTCCCTCCCACTCTTCCTTCCAACTCCTGAGAG  1099
      || || ||||| ||||| ||||||||||||     ||  ||||  |||||
seq2  CATCCACTCTCTCATCCTTCCCTCCCACTC-----TCTCACTCTGGAGAG  1085

seq1  GCTTATCCAATTATCAAATTTTATAACATGAAATTT  1135
      |||||||    ||||||  ||||| |||||||||||
seq2  GCTTATC---ATATCAA--TTTAT-ACATGAAATTT  1115

seq1: chr3_156167035_156168096
seq2: B6Ng01-232F18.g_84_1138 (reverse)

seq1  CATCTAAA-TCTGGAAAAAGAACAGAGTGAAATCTTTATCTTTAGCTGCC  49
      |||||||| ||||  ||| |||||||||| |||| ||||| |||||||||
seq2  CATCTAAATTCTG--AAATGAACAGAGTG-AATC-TTATC-TTAGCTGCC  45

seq1  AACAAGACCATTTTCTCCTTGCCC-AGATGGCATACCTCCGCACTGGAAA  98
      |||||||||  ||||||  ||||| |||||||||| ||||||||| ||||
seq2  AACAAGACCCATTTCTC--TGCCCAAGATGGCATA-CTCCGCACT-GAAA  91

seq1  TCAGCAGGCTTTAGCAACGAGATTAGAAACATGTATTGGTAGGTAGGAAA  148
      ||||||||| ||||| |||||||||| |||||||||||||||||||||||
seq2  TCAGCAGGC-TTAGC-ACGAGATTAG-AACATGTATTGGTAGGTAGGAAA  138

seq1  TATAGGATCCAGT-AGAAGAAACCACTAATAAGAGTCTAATTGTCAAGTA  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATAGGATCCAGTAAGAAGAAACCACTAATAAGAGTCTAATTGTCAAGTA  188

seq1  AGACATATTATACATACTATGTATAATTTAACTGAAATTATTGTTTCTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATTATACATACTATGTATAATTTAACTGAAATTATTGTTTCTCA  238

seq1  G-AATTTAGTGTTTTTTCTATATGTATGCTGAAGATACAGGAAACAATAG  296
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTAGTGTTTTTTCTATATGTATGCTGAAGATACAGGAAACAATAG  288

seq1  TAAGCAGTCATTGG-AAAAAAATCATAATGATAACTAACACAAATATAAA  345
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTCATTGGAAAAAAAATCATAATGATAACTAACACAAATATAAA  338

seq1  TTATAATTGAAAAGTGTTGAATTGTTAGAGATTATCTAATAGTGCAGAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGAAAAGTGTTGAATTGTTAGAGATTATCTAATAGTGCAGAAT  388

seq1  ATTATCAGCTGGAGTTTGAGCAAAATCTAAACTACATAGAATAACATAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGCTGGAGTTTGAGCAAAATCTAAACTACATAGAATAACATAAT  438

seq1  TGAGTGTTCAAAATTTAAAACTTCTTGTTTTACAAGCTAAAATCAGTTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTCAAAATTTAAAACTTCTTGTTTTACAAGCTAAAATCAGTTAT  488

seq1  ATTCAGTTACTTTGTGTTATATAGAATTTAAGGCATATATAAATTTGAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTACTTTGTGTTATATAGAATTTAAGGCATATATAAATTTGAAA  538

seq1  TTTTGAAATTTGTGTGTGAGAGATTTAATACAATCCTCATCAAAATTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATTTGTGTGTGAGAGATTTAATACAATCCTCATCAAAATTTTA  588

seq1  ACACAGTTTTTCACTGGAATTGAAAAGCAATTTTCACTTTAAATGGATAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTTTTCACTGGAATTGAAAAGCAATTTTCACTTTAAATGGATAT  638

seq1  ACAAGAAAAACACTGTAACTAAGACAGCTCTGAATAATGAACCAGAATAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAACACTGTAACTAAGACAGCTCTGAATAATGAACCAGAATAA  688

seq1  CTAAAACACTCCTCCAGAACTGCTGAAATCATCCTGAATTTCAAGTTGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACACTCCTCCAGAACTGCTGAAATCATCCTGAATTTCAAGTTGTA  738

seq1  CTACAGAGATATAAAGAAGCACACAGCAAGGTATTAGCATAAAAAAGATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGATATAAAGAAGCACACAGCAAGGTATTAGCATAAAAAAGATA  788

seq1  CATATTGATCCAGGGAATCTAAATGAAGAGGTAGACATAAGTCCACATAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGATCCAGGGAATCTAAATGAAGAGGTAGACATAAGTCCACATAC  838

seq1  CTTCTGACACCCAATAAAGAAGCCAGAATTATATACTAGGAAAAAAAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACACCCAATAAAGAAGCCAGAATTATATACTAGGAAAAAAAAAA  888

seq1  AAAGACAGCAGCTTTGCAATTGGTGCTGGTCAAACTGGATGGCTACTTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCAGCTTTGCAATTGGTGCTGGTCAAACTGGATGGCTACTTGA  938

seq1  ACAAAACAGAAAAGTGAAAATTGATCCATATTTATTGCCTTGCACAAAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGAAAAGTGAAAATTGATCCATATTTATTGCCTTGCACAAAAC  988

seq1  TCAACTTCATATGTATCAAACACCTCAGCATAAGACCAGATACATTCACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTCATATGTATCAAACACCTCAGCATAAGACCAGATACATTCACT  1038

seq1  TTGATAGAAGAGAAGGT  1062
      |||||||||||||||||
seq2  TTGATAGAAGAGAAGGT  1055