BAC Information

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BAC

Clone NameB6Ng01-233A01
Chromosome3 (Build37)
Map Location 114,330,715 - 114,449,938
singlet/doubletdoublet
Overlap genenone
Upstream geneRnpc3, Col11a1, LOC100043220
Downstream geneOlfm3, EG546808, Edg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233A01.bB6Ng01-233A01.g
ACCGA045190GA045191
length1,0721,188
definitionB6Ng01-233A01.b B6Ng01-233A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,330,715 - 114,331,784)(114,448,761 - 114,449,938)
sequence
gaattcactaatccaagtaaccctttgatagtttcaaaaatattttaaca
ttatttactaaacatttccattattttgtttttctgggaaaacaattgtt
attgaaattattgttctacttttattactggaacataaaatgtgattcat
tctattttattttgcatgaatccttaaaccttttaaaattgatatttgtt
catggtttaagatcactgttatatgagctgagaatgtaaacatgatacaa
atagagtaaactttagaagagaaaaatctaaagtgaggaatcttttcacc
atcaaattgatctatgggcatgtcttaagggctgttttcttaatgtggga
gggcacaacccactgtggccagtgctatccttgagaggatagactgggtt
gtacaattcaagactctttttgtaatttaattttgttgaattttaattta
tctgtatgtgtgtgttggtctctgttggtctagaggtttaccacatgacc
cgtgtaccatagagaccagaagagatcatcagacccttagaaactggagt
tacagatgactgtaaaccacacaatttggttactgcaaactaaagcttca
gcctcttatgaaagcagcaagtaagtggttttaacatggagccatgcctt
cggcttcctacttccttttataaggggctttggtcatggtgttaatacta
acttttcttgttttaggaattgtttttttttttagtaaactttttgtata
atgaactgctttattcattttttcattcataatgattattaataatgtat
agcattatttcctttgagtttttgattccctttctatcacacaccagttt
ttataaaatgccctggaaactaatccaatgtagccatatcctcattaaat
tatcatacaaaaataatgctatgttagtacttaaatatttaatgaatagg
aaattatatgatattaccacttttcataatatggttttctatacaagagt
ttgctccactacaattcaatataattttccagaaacttatagctttactt
tcaaaaacaataatttcaaatg

gaattcatttgtcagaaagagaccccataatctaatcatgtccccaaagt
gtctcttctgatcatttcattggttaccaatcattaagagcataaacacg
agccttaaggaatatgtcataattattagaaatgattttattctaatgct
acatattgatggccggctctgtccacgtagtctttgcattttagattttt
ttcaaatatacataataagctatcaagggataatacttttaccagtgaac
aaataaatatttcatacttagcactgacattttttaggctataactgatt
tttagatttacttaagatgaaacaattatagtgagatggctcagtgggta
agagcacccgactgctcttccgaaggtccagagttcaaatcccagcaacc
acatggtggttcacaaccatctgtaacaagatctgacactccctcttctg
gagtgtctgaaggcagctacagtgtacttacatataataaataaataaat
cttaaaaaaaaatatttacttcagaaacacaatttaaagcctacaatttt
tcagcctaattacagaaatattagaatatgttattttaattttgatatag
agttctgcccttatatggatcatcttctgagtgaaggcaatgagtttcac
aaacagatggaacacatttcttaatttctcattatgaatgctgcccagag
catttactttctctttgctttatccatttacattttataaatgtaaatcg
taggtactcatttaactttgagaactggcatgtgctttcccacagagaaa
ttatatcattaactaactatccagttagaaatcataccataccagtcaaa
actcaacacactgaagagaggaccacgggacagctcatcagtcatatttc
acaaatccccacagcgggagctttaatgtcacaggaagatatgtgttcag
aagctgtgaggagaactggacgtattttttatggctggctgcaaagattt
ttacacctgactgtgattgatctgataatgatctacaaatccaatattat
acatgggtataaattctgtatttaataccttagcactcttttaggcggag
aaagacttattcttagaaagaaacaaactgtaactgcctgacaaatggaa
accattgaaatatctttccacaggttacatcacattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114330715_114331784
seq2: B6Ng01-233A01.b_49_1120

seq1  GAATTCACTAATCCAAGTAACCCTTTGATAGTTTCAAAAATATTTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATCCAAGTAACCCTTTGATAGTTTCAAAAATATTTTAACA  50

seq1  TTATTTACTAAACATTTCCATTATTTTGTTTTTCTGGGAAAACAATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTAAACATTTCCATTATTTTGTTTTTCTGGGAAAACAATTGTT  100

seq1  ATTGAAATTATTGTTCTACTTTTATTACTGGAACATAAAATGTGATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATTATTGTTCTACTTTTATTACTGGAACATAAAATGTGATTCAT  150

seq1  TCTATTTTATTTTGCATGAATCCTTAAACCTTTTAAAATTGATATTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTATTTTGCATGAATCCTTAAACCTTTTAAAATTGATATTTGTT  200

seq1  CATGGTTTAAGATCACTGTTATATGAGCTGAGAATGTAAACATGATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTAAGATCACTGTTATATGAGCTGAGAATGTAAACATGATACAA  250

seq1  ATAGAGTAAACTTTAGAAGAGAAAAATCTAAAGTGAGGAATCTTTTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTAAACTTTAGAAGAGAAAAATCTAAAGTGAGGAATCTTTTCACC  300

seq1  ATCAAATTGATCTATGGGCATGTCTTAAGGGCTGTTTTCTTAATGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTGATCTATGGGCATGTCTTAAGGGCTGTTTTCTTAATGTGGGA  350

seq1  GGGCACAACCCACTGTGGCCAGTGCTATCCTTGAGAGGATAGACTGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAACCCACTGTGGCCAGTGCTATCCTTGAGAGGATAGACTGGGTT  400

seq1  GTACAATTCAAGACTCTTTTTGTAATTTAATTTTGTTGAATTTTAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTCAAGACTCTTTTTGTAATTTAATTTTGTTGAATTTTAATTTA  450

seq1  TCTGTATGTGTGTGTTGGTCTCTGTTGGTCTAGAGGTTTACCACATGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTGTGTGTTGGTCTCTGTTGGTCTAGAGGTTTACCACATGACC  500

seq1  CGTGTACCATAGAGACCAGAAGAGATCATCAGACCCTTAGAAACTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACCATAGAGACCAGAAGAGATCATCAGACCCTTAGAAACTGGAGT  550

seq1  TACAGATGACTGTAAACCACACAATTTGGTTACTGCAAACTAAAGCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGACTGTAAACCACACAATTTGGTTACTGCAAACTAAAGCTTCA  600

seq1  GCCTCTTATGAAAGCAGCAAGTAAGTGGTTTTAACATGGAGCCATGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTATGAAAGCAGCAAGTAAGTGGTTTTAACATGGAGCCATGCCTT  650

seq1  CGGCTTCCTACTTCCTTTTATAAGGGGCTTTGGTCATGGTGTTAATACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCCTACTTCCTTTTATAAGGGGCTTTGGTCATGGTGTTAATACTA  700

seq1  ACTTTTCTTGTTTTAGGAATTG-TTTTTTTTTTAGTAAAC-TTTTGTATA  748
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ACTTTTCTTGTTTTAGGAATTGTTTTTTTTTTTAGTAAACTTTTTGTATA  750

seq1  ATGAACTGCTTTATTCATTTTTTCATTCATAATGATTATTAATAATGTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGCTTTATTCATTTTTTCATTCATAATGATTATTAATAATGTAT  800

seq1  AGCATTATTTCCTTTGAGTTTTTGATT-CCTTTCTATCACACACCAGTTT  847
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCATTATTTCCTTTGAGTTTTTGATTCCCTTTCTATCACACACCAGTTT  850

seq1  TTATAAAATGCCCTGG-AACTAATCCAATGTAGCCATATCCTCATTAAAT  896
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTATAAAATGCCCTGGAAACTAATCCAATGTAGCCATATCCTCATTAAAT  900

seq1  TATCATACAAAAATAATGCTATGTTAGGTACTTAAATATTTAATGAATAG  946
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCATACAAAAATAATGCTATGTTA-GTACTTAAATATTTAATGAATAG  949

seq1  GAAAATTATAATGATATTACCACCTTTCAATAATATGTTTTTCTATACAA  996
      | ||||||| ||||||||||||| |||| |||||||| ||||||||||||
seq2  G-AAATTAT-ATGATATTACCACTTTTC-ATAATATGGTTTTCTATACAA  996

seq1  GAGTTTGCTCCACTACAAATTCATATAATTTTCCA-TAACTTATAGCTTT  1045
      |||||||||||||||||| |  |||||||||||||  |||||||||||||
seq2  GAGTTTGCTCCACTACAATTCAATATAATTTTCCAGAAACTTATAGCTTT  1046

seq1  ACTTTCTAAAAACAATA--TTCAAATG  1070
      |||||| ||||||||||  ||||||||
seq2  ACTTTC-AAAAACAATAATTTCAAATG  1072


seq1: chr3_114448761_114449938
seq2: B6Ng01-233A01.g_66_1253 (reverse)

seq1  AGAATG---TGTAA-CTGTG--AAAATATTTCA--TGTGTTCATTTGTCA  42
      ||||||   ||||| |||||  || ||||||||   || | |||||||||
seq2  AGAATGTGATGTAACCTGTGGAAAGATATTTCAATGGTTTCCATTTGTCA  50

seq1  -GCAG-TACATTTTG-TTCTTTCTAGGAATAAAGTC-TTCTC--GCTAAA  86
       |||| |||| |||| ||||||||| |||| ||||| |||||   |||||
seq2  GGCAGTTACAGTTTGTTTCTTTCTAAGAAT-AAGTCTTTCTCCGCCTAAA  99

seq1  GGAGTTGCTAAGGTATTAAATACAGAAATTAATTACCATGTATAATATT-  135
       ||| |||||||||||||||||||| |||| ||  |||||||||||||| 
seq2  AGAG-TGCTAAGGTATTAAATACAG-AATTTATACCCATGTATAATATTG  147

seq1  GATTTGTAGATCATTATTCAGATCAAATCACAGTCAGGTGTAAAAATCTT  185
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  GATTTGTAGATCATTA-TCAGATC-AATCACAGTCAGGTGTAAAAATCTT  195

seq1  TGCAGCCAGCCAT-AAAAATACGTCCAGTTCTCCTCACAGCTTCTGAACA  234
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAGCCATAAAAAATACGTCCAGTTCTCCTCACAGCTTCTGAACA  245

seq1  CAATATCTTCCTGTGACATTAAAGCTCCCGCTGTGGGGATTTGTGAAATA  284
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ATATCTTCCTGTGACATTAAAGCTCCCGCTGTGGGGATTTGTGAAATA  294

seq1  TGACTGATGAGCTGTCCCGTGGTCCTCTCTTCAGTGTGTTGAGTTTTGAC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATGAGCTGTCCCGTGGTCCTCTCTTCAGTGTGTTGAGTTTTGAC  344

seq1  TGGTATGGTATGATTTCTAACTGGATAGTTAGTTAATGATATAATTTCTC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGGTATGATTTCTAACTGGATAGTTAGTTAATGATATAATTTCTC  394

seq1  TGTGGGAAAGCACATGCCAGTTCTCAAAGTTAAATGAGTACCTACGATTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAAGCACATGCCAGTTCTCAAAGTTAAATGAGTACCTACGATTT  444

seq1  ACATTTATAAAATGTAAATGGATAAAGCAAAGAGAAAGTAAATGCTCTGG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATAAAATGTAAATGGATAAAGCAAAGAGAAAGTAAATGCTCTGG  494

seq1  GCAGCATTCATAATGAGAAATTAAGAAATGTGTTCCATCTGTTTGTGAAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTCATAATGAGAAATTAAGAAATGTGTTCCATCTGTTTGTGAAA  544

seq1  CTCATTGCCTTCACTCAGAAGATGATCCATATAAGGGCAGAACTCTATAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCCTTCACTCAGAAGATGATCCATATAAGGGCAGAACTCTATAT  594

seq1  CAAAATTAAAATAACATATTCTAATATTTCTGTAATTAGGCTGAAAAATT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAAATAACATATTCTAATATTTCTGTAATTAGGCTGAAAAATT  644

seq1  GTAGGCTTTAAATTGTGTTTCTGAAGTAAATATTTTTTTTTAAGATTTAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTTTAAATTGTGTTTCTGAAGTAAATATTTTTTTTTAAGATTTAT  694

seq1  TTATTTATTATATGTAAGTACACTGTAGCTGCCTTCAGACACTCCAGAAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTATATGTAAGTACACTGTAGCTGCCTTCAGACACTCCAGAAG  744

seq1  AGGGAGTGTCAGATCTTGTTACAGATGGTTGTGAACCACCATGTGGTTGC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGTCAGATCTTGTTACAGATGGTTGTGAACCACCATGTGGTTGC  794

seq1  TGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCA  844

seq1  CTGAGCCATCTCACTATAATTGTTTCATCTTAAGTAAATCTAAAAATCAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCATCTCACTATAATTGTTTCATCTTAAGTAAATCTAAAAATCAG  894

seq1  TTATAGCCTAAAAAATGTCAGTGCTAAGTATGAAATATTTATTTGTTCAC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCTAAAAAATGTCAGTGCTAAGTATGAAATATTTATTTGTTCAC  944

seq1  TGGTAAAAGTATTATCCCTTGATAGCTTATTATGTATATTTGAAAAAAAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAAGTATTATCCCTTGATAGCTTATTATGTATATTTGAAAAAAAT  994

seq1  CTAAAATGCAAAGACTACGTGGACAGAGCCGGCCATCAATATGTAGCATT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGCAAAGACTACGTGGACAGAGCCGGCCATCAATATGTAGCATT  1044

seq1  AGAATAAAATCATTTCTAATAATTATGACATATTCCTTAAGGCTCGTGTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAATCATTTCTAATAATTATGACATATTCCTTAAGGCTCGTGTT  1094

seq1  TATGCTCTTAATGATTGGTAACCAATGAAATGATCAGAAGAGACACTTTG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTTAATGATTGGTAACCAATGAAATGATCAGAAGAGACACTTTG  1144

seq1  GGGACATGATTAGATTATGGGGTCTCTTTCTGACAAATGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGATTAGATTATGGGGTCTCTTTCTGACAAATGAATTC  1188


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