BAC Information

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BAC

Clone NameB6Ng01-233B17
Chromosome3 (Build37)
Map Location 3,904,722 - 4,012,275
singlet/doubletdoublet
Overlap geneLOC100039167
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157
Downstream geneLOC667709, LOC620283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233B17.bB6Ng01-233B17.g
ACCGA045260GA045261
length1,1361,066
definitionB6Ng01-233B17.b B6Ng01-233B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,011,128 - 4,012,275)(3,904,722 - 3,905,802)
sequence
gaattctctacctacttatccatgatagacacctttaaaagataagataa
gataagtgttttaattttaaaaacgaacaagagataaaatggcatcattt
atggcaaaaaaaaaaaggacgacttaaaagagcaagtaatcttttttttt
ctttttttgagaaattacaattaaacaatataagtaacaggaacaatata
tgatgggcttaaccacataacccagtgatttatttgcagaaaggggaaat
aacataaaatttacaggtcctccaaaagatgattaaatgaaaatttctgt
tgatagaggaatgatacaactagtgactctcctcaaagaaggaaatggaa
caaatgaggtacaagaacacatgtttcaattgtgaagattattcgttcac
aaggtcattacagtctcagaataaaagcaatttttaaaggaatttatact
tgattccaacaaaatgtatggttataaaaaatactattctgattacatag
ccagaaacaggtgatatgagatataaacaaataatatttaaacacatgaa
aaatatagtctatcttatcttaaaagataaaaaacaactatcagtagtta
gaatgtttcatttagcaaaatggttagacaaataaaataccagagaacaa
aattacaactgagaattatgaattataaacagaataaacaggagtatctc
actaaatttacatggtaagagaatatacatcccacattagtcatgatatc
tccctctataaagaaccacttcaatgcttcacaaaataaatctttttgaa
gcatccaatgtaggtgtgaatagttctatactccactgtgaaagttagag
tactgtcagccaatagttctacaaactagagcatgccaccccacccacat
aaattatagaatacagtagagaaatatgaaaaccatatgaagagaagaga
aatatattttaaaagtcattgtttatgggtgatcccccacaatgatttta
gggcccaagtctagtcctatgtctttagcaaaagaaagaagaaattggga
atgcgactaatgttttcctgtaaacaagaaaaagttacatagacactgct
ctaataataatatacttttatgtgtttaataacagc

gaattctatgtggcttaccagatgtgtgccagttaactgagggcaaaaga
atcccaaaagtccttcaggagacaagtaagaagaagggtaagggatttat
tggataaacattaggatcaggtgattttaataaggacttagaaagaattt
tccaatctgagcattttctcttcctcctacccacagaggccaataacttg
ggcatcaaaaatattctctttcttgataacaattctcatccacttatcca
ggaacacctatctggatttcacatttctcttatatttcttcttgaaccat
gactaaattcttaatgagaattattaaagaagggtattagcaacaaagag
taacatatatagtgcttcatttgatgacaaattagactttcttaagacat
gtgtgataaagcaaaaggaaaacttctttttacttaaacaatgaagacgt
ttccaggtgaatttacattgaagcttggaactgaaatatgagtaatgatt
aactaggtgaaaaacacttaagaatagatgattgggttgaagaaattaca
aatactgaactgaagaaagagctgagaagttattttgacaccctcaacat
tgggtatggcttgcagtctgtaatccttagtggagtcaagtgaggaatac
atgcaggcacacaattggggccaggagactttactactttttgttaaaga
taaattctttattttatgctggctcaagagaaggagccagataattccgg
tcagcaccatccccagggcacaaactcagcagattgtcccacggtcccca
gaggattctccatagtgcagcacccagggatcactggtgagcagaacaca
tctgttcctaaaaaaaaaaaaaaaaccatgagggggttcttggggaaggg
tataggagactttcagataacatttgtatgttaatgaagaccatatctaa
ttttaaaaaagaaaaaaaattcttctatttcagaaatttcaaatatatct
aaacttcatagaaagcaagttatactgggtgtttcatgttatgagatgtg
aggatactggaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4011128_4012275
seq2: B6Ng01-233B17.b_45_1180 (reverse)

seq1  GCTG-TATTAAACACATAAAGGTATAATAAATATAATAAAGGAAGCCAGT  49
      |||| ||||||||||||||| ||||| ||    || || ||     ||||
seq2  GCTGTTATTAAACACATAAAAGTATATTA---TTATTAGAG-----CAGT  42

seq1  GTTCCTTAATGTAACTTTTTCCTTTGTTTCCAGGGAAACATATAGTCGCA  99
      ||  ||  |||||||||||||  |||||| |||| |||||| ||||||||
seq2  GT--CT--ATGTAACTTTTTC--TTGTTTACAGGAAAACAT-TAGTCGCA  85

seq1  TTTCCCAATTTC-TCTTTCTTTTGCTAAAGACATAGGACTAGACTTTGGC  148
       ||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  -TTCCCAATTTCTTCTTTCTTTTGCTAAAGACATAGGACTAGACTTGGGC  134

seq1  CCTTAAATCATTGTGGGGGATCACCCATAAACAATGACTTTTAAAATATA  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATCATTGTGGGGGATCACCCATAAACAATGACTTTTAAAATATA  184

seq1  TTTCTCTTCTCTTCATATGGTTTTCATATTTCTCTACTGTATTCTATAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTCTTCATATGGTTTTCATATTTCTCTACTGTATTCTATAAT  234

seq1  TTATGTGG--TGGGTGGCATGCTCTAGTTTGTAGAACTATTGGCTGACAG  296
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGGTGGGGTGGCATGCTCTAGTTTGTAGAACTATTGGCTGACAG  284

seq1  TACTCTAACTTTCACAGTGGAGTATAGAACTATTCACACCTACATTGGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAACTTTCACAGTGGAGTATAGAACTATTCACACCTACATTGGAT  334

seq1  GCTTCAAAAAGATTTATTTTGTGAAGCATTGAAGTGGTTCTTTATAGAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAAAGATTTATTTTGTGAAGCATTGAAGTGGTTCTTTATAGAGG  384

seq1  GAGATATCATGACTAATGTGGGATGTATATTCTCTTACCATGTAAATTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCATGACTAATGTGGGATGTATATTCTCTTACCATGTAAATTTA  434

seq1  GTGAGATACTCCTGTTTATTCTGTTTATAATTCATAATTCTCAGTTGTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATACTCCTGTTTATTCTGTTTATAATTCATAATTCTCAGTTGTAA  484

seq1  TTTTGTTCTCTGGTATTTTATTTGTCTAACCATTTTGCTAAATGAAACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTCTGGTATTTTATTTGTCTAACCATTTTGCTAAATGAAACAT  534

seq1  TCTAACTACTGATAGTTGTTTTTTATCTTTTAAGATAAGATAGACTATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTACTGATAGTTGTTTTTTATCTTTTAAGATAAGATAGACTATAT  584

seq1  TTTTCATGTGTTTAAATATTATTTGTTTATATCTCATATCACCTGTTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTGTTTAAATATTATTTGTTTATATCTCATATCACCTGTTTCT  634

seq1  GGCTATGTAATCAGAATAGTATTTTTTATAACCATACATTTTGTTGGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTAATCAGAATAGTATTTTTTATAACCATACATTTTGTTGGAAT  684

seq1  CAAGTATAAATTCCTTTAAAAATTGCTTTTATTCTGAGACTGTAATGACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATAAATTCCTTTAAAAATTGCTTTTATTCTGAGACTGTAATGACC  734

seq1  TTGTGAACGAATAATCTTCACAATTGAAACATGTGTTCTTGTACCTCATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACGAATAATCTTCACAATTGAAACATGTGTTCTTGTACCTCATT  784

seq1  TGTTCCATTTCCTTCTTTGAGGAGAGTCACTAGTTGTATCATTCCTCTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATTTCCTTCTTTGAGGAGAGTCACTAGTTGTATCATTCCTCTAT  834

seq1  CAACAGAAATTTTCATTTAATCATCTTTTGGAGGACCTGTAAATTTTATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAATTTTCATTTAATCATCTTTTGGAGGACCTGTAAATTTTATG  884

seq1  TTATTTCCCCTTTCTGCAAATAAATCACTGGGTTATGTGGTTAAGCCCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCCTTTCTGCAAATAAATCACTGGGTTATGTGGTTAAGCCCAT  934

seq1  CATATATTGTTCCTGTTACTTATATTGTTTAATTGTAATTTCTCAAAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTGTTCCTGTTACTTATATTGTTTAATTGTAATTTCTCAAAAAA  984

seq1  AGAAAAAAAAAGATTACTTGCTCTTTTAAGTCGTCCTTTTTTTTTTTGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAGATTACTTGCTCTTTTAAGTCGTCCTTTTTTTTTTTGCC  1034

seq1  ATAAATGATGCCATTTTATCTCTTGTTCGTTTTTAAAATTAAAACACTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATGCCATTTTATCTCTTGTTCGTTTTTAAAATTAAAACACTTA  1084

seq1  TCTTATCTTATCTTTTAAAGGTGTCTATCATGGATAAGTAGGTAGAGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTTATCTTTTAAAGGTGTCTATCATGGATAAGTAGGTAGAGAAT  1134

seq1  TC  1148
      ||
seq2  TC  1136


seq1: chr3_3904722_3905802
seq2: B6Ng01-233B17.g_66_1131

seq1  GAATTCTATGTGGCTTACCAGATGTGTGCCAGTTAACTGAGGGCAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGGCTTACCAGATGTGTGCCAGTTAACTGAGGGCAAAAGA  50

seq1  ATCCCAAAAGTCCTTCAGGAGACAAGTAAGAAGAAGGGTAAGGGATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAAGTCCTTCAGGAGACAAGTAAGAAGAAGGGTAAGGGATTTAT  100

seq1  TGGATAAACATTAGGATCAGGTGATTTTAATAAGGACTTAGAAAGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAACATTAGGATCAGGTGATTTTAATAAGGACTTAGAAAGAATTT  150

seq1  TCCAATCTGAGCATTTTCTCTTCCTCCTACCCACAGAGGCCAATAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTGAGCATTTTCTCTTCCTCCTACCCACAGAGGCCAATAACTTG  200

seq1  GGCATCAAAAATATTCTCTTTCTTGATAACAATTCTCATCCACTTATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAAAAATATTCTCTTTCTTGATAACAATTCTCATCCACTTATCCA  250

seq1  GGAACACCTATCTGGATTTCACATTTCTCTTATATTTCTTCTTGAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCTATCTGGATTTCACATTTCTCTTATATTTCTTCTTGAACCAT  300

seq1  GACTAAATTCTTAATGAGAATTATTAAAGAAGGGTATTAGCAACAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATTCTTAATGAGAATTATTAAAGAAGGGTATTAGCAACAAAGAG  350

seq1  TAACATATATAGTGCTTCATTTGATGACAAATTAGACTTTCTTAAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATATAGTGCTTCATTTGATGACAAATTAGACTTTCTTAAGACAT  400

seq1  GTGTGATAAAGCAAAAGGAAAACTTCTTTTTACTTAAACAATGAAGACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATAAAGCAAAAGGAAAACTTCTTTTTACTTAAACAATGAAGACGT  450

seq1  TTCCAGGTGAATTTACATTGAAGCTTGGAACTGAAATATGAGTAATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGAATTTACATTGAAGCTTGGAACTGAAATATGAGTAATGATT  500

seq1  AACTAGGTGAAAAACACTTAAGAATAGATGATTGGGTTGAAGAAATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGAAAAACACTTAAGAATAGATGATTGGGTTGAAGAAATTACA  550

seq1  AATACTGAACTGAAGAAAGAGCTGAGAAGTTATTTTGACACCCTCAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAACTGAAGAAAGAGCTGAGAAGTTATTTTGACACCCTCAACAT  600

seq1  TGGGTATGGCTTGCAGTCTGTAATCCTTAGTGGAGTCAAGTGAGGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGGCTTGCAGTCTGTAATCCTTAGTGGAGTCAAGTGAGGAATAC  650

seq1  ATGCAGGCACACAATTGGGGCCAGGAGACTTTACTACTTTTTGTTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCACACAATTGGGGCCAGGAGACTTTACTACTTTTTGTTAAAGA  700

seq1  TAAATTCTTTATTTTATGCTGGCTCAAGAGAAGGAGCCAGATAATTCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTTTATTTTATGCTGGCTCAAGAGAAGGAGCCAGATAATTCCGG  750

seq1  TCAGCACCATCCCCAGGGCACAAACTCAGCAGATTGTCCCACGGTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCATCCCCAGGGCACAAACTCAGCAGATTGTCCCACGGTCCCCA  800

seq1  GAGGATTCTCCATAGTGCAGGCACCCAGGGATCACTGGTGAGCAGAACAC  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGGATTCTCCATAGTGCA-GCACCCAGGGATCACTGGTGAGCAGAACAC  849

seq1  ATCTGTTCCTAAAAAAAAAAAAAAAAAAAAAACCATGAGGGGGTTCTTGG  900
      ||||||||||      |||||||||||||||||||||||||||||||| |
seq2  ATCTGTTCCT------AAAAAAAAAAAAAAAACCATGAGGGGGTTCTT-G  892

seq1  GGGAAGGGTATAGGAGACTTTCAGGATAACATTTGTAATGTAAATGAAGA  950
      ||||||||||||||||||||||| |||||||||||| |||| ||||||||
seq2  GGGAAGGGTATAGGAGACTTTCA-GATAACATTTGT-ATGTTAATGAAGA  940

seq1  ACATATCTAATTTTAAAAAAGAAAAAAAATTC-TCTATTTCAGAAA-TTC  998
       ||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CCATATCTAATTTTAAAAAAGAAAAAAAATTCTTCTATTTCAGAAATTTC  990

seq1  AAATAAGGATCTAAACTTTCATAGAAAGCAAG-TATACTGGGTGTTTTCA  1047
      |||||   |||||||| ||||||||||||||| ||||||||||||||   
seq2  AAATA--TATCTAAAC-TTCATAGAAAGCAAGTTATACTGGGTGTTT---  1034

seq1  AATGTATTGAGATGTGAGGGATACTTGAAATAGA  1081
       ||||  |||||||||| |||||| || ||||||
seq2  CATGTTATGAGATGTGA-GGATAC-TGGAATAGA  1066


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