BAC Information

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BAC

Clone NameB6Ng01-233D23
Chromosome3 (Build37)
Map Location 114,828,545 - 114,829,691
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233D23.bB6Ng01-233D23.g
ACCGA045366GA045367
length1,1361,066
definitionB6Ng01-233D23.b B6Ng01-233D23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactatgtagacgtagaccagggaaggctcaaatcagagatcttc
ctgtctctgcctcctgagtactaagattaaaggtatgtgtcaattcactt
ggctgaatctgtgtttcttatgttaccatttatagctataagagatcaaa
aattgagtttcatagtatctgtacttaattcatgtgccccatttgtggtc
ctacctaaaataatttactatattgcatttttttaacttaattttatttg
taattcattttttacactccatattcccttccccacccctacccatccac
cctccaacttctccacaaccataccttctccctaccccacctcatctcca
attggatgcccccaccacccaccccaccttacttctaaactccctggggc
ctccagtctcttatgggttacatgcttcatcactgaatgaccacagacct
ggaagtcctctactgtgtgtgtgttagggacctcatatcagcttgtgtat
gctgtctgtttggtgggccaatgtttgaaagactgtgggggtccaaatta
attaagactgctggttctcctacagaattgcccttctcagcttctttcag
ccttccctaatttaacaacctgggtcagctgctatatagcatttcttatg
gtctatgtttgagatgatggagaagttgacattaacacttagtgttgttt
gataatgtcatagaaactcaatttgtaggtgtgataaaggatatgattat
acttctttagcaacatgacatttttgattcttctttttaaagtatcttat
ttctgtaagacttggccttttaaaactgcaatggctatatttttcatagt
tgctttaacttgaagatatattttttatttttctcccaaatgtattctta
tataaaatttacaaaacaaaaagtttggtgatctgagactaagagttagt
gatgtcttaaatcaaagttttcttttagaaatcaacttcagactagtata
tgtaaattcatttacaaggagtattttttataataaaaatattacttttt
ataataaaactttattttccattgttatacattttatgttatattgttat
ttccagtagcatccactctgatgtaaagttctactc
gaattcagtaggattgttacctattcagtaacagtcaaaattacctctag
cattgtgggagagacaggaaaagaaattaggtattgcaatttacttgaat
agagctagaaatctcacggctagtctacatggtaaatacttaggacaata
gctgagccactcccagacacaggaatttacctggcctaggaagaaggtgg
gttgtggtcttagggggaactgaagtattattcatgaaagggttagtaga
acttgcctggtgcctgtttttcactaggcccagaggaatagcataatcaa
gtatttactaaagggcccctcgtggtgggtttaacaatagactagaattg
gaactatggcaagggcatgaagcccttgaccctggcttctaagattaagc
tgactttaagtggggctgcttttgattccagttgttaacattgattttta
tcccaattggttcctgttagcattttgtatacatccctctgttttgtgta
aaagtcacttttaagtcggcttgctttgtgacaaattacattcaggtact
acactcccttgtgtctgtgtctgtttatgaccctttgtcaccgactccct
gcccacctgtaccggaaccctgatttctcctggggactgaggagggacga
ctgaggccagactgtggcaacttcataaacataagatgagcaaagaaaac
aataacagacgtgctaaagtgggctggagaaaggccatcatgcaacagta
ttatacaaagaaccacaggcaactgaagaatcctgagaatgggattccat
cctgagagtgtaatgttcatattacccataaatcaacctttcctagagaa
atgcttatcccaaatcaaatggtcagaactgacaacatgcatacaattaa
gactgagtaggttatatttagcaatacacacatatatgcacatactatat
gtgtttttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatag
agaagtataacgagcaggtctgagtgtacgcatgatgacagtatagtact
atttggctagggagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114828545_114829691
seq2: B6Ng01-233D23.b_48_1183 (reverse)

seq1  GAGTAGAACTTTTACAATCAGAGTGATTGCTACTGAAATATAACCATATA  50
      ||||||||| ||||| |||||||||  |||||||| || ||||| |||||
seq2  GAGTAGAAC-TTTAC-ATCAGAGTGGATGCTACTGGAA-ATAACAATATA  47

seq1  ACATTAAAAATGTATTACCAT-GAAAATAAAGTTTTATTATAAAAAGTAA  99
      ||||  ||||||||| || || ||||||||||||||||||||||||||||
seq2  ACAT--AAAATGTATAACAATGGAAAATAAAGTTTTATTATAAAAAGTAA  95

seq1  TATTTTTATTAT-AAAAATACTCCTTTGTAAATGAATTTTACATATACTA  148
      |||||||||||| ||||||||||| ||||||||||| |||||||||||||
seq2  TATTTTTATTATAAAAAATACTCC-TTGTAAATGAA-TTTACATATACTA  143

seq1  GTTCTGAAGTTTGAATTTTCTAAAAGAAAACTTTTGATTTTAAGACATCA  198
      | ||||||| ||||  ||||||||||||||| ||||| ||||||||||||
seq2  G-TCTGAAG-TTGA--TTTCTAAAAGAAAAC-TTTGA-TTTAAGACATCA  187

seq1  CTAACTCTTAGTTCTCAGATCACC-AACTTTTTGTTTTGTAAATTTTATA  247
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  CTAACTCTTAG-TCTCAGATCACCAAACTTTTTGTTTTGTAAATTTTATA  236

seq1  TAAGAATACATTTGGGAGAAAAATAAAAAATATATCTTCAAGTTAAAGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATACATTTGGGAGAAAAATAAAAAATATATCTTCAAGTTAAAGCA  286

seq1  ACTATGAAAAATATAGCCATTGCAGTTTTAAAAGGCCAAGTCTTACAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAAAATATAGCCATTGCAGTTTTAAAAGGCCAAGTCTTACAGAA  336

seq1  ATAAGATACTTTAAAAAGAAGAATCAAAAATGTCATGTTGCTAAAGAAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATACTTTAAAAAGAAGAATCAAAAATGTCATGTTGCTAAAGAAGT  386

seq1  ATAATCATATCCTTTATCACACCTACAAATTGAGTTTCTATGACATTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATATCCTTTATCACACCTACAAATTGAGTTTCTATGACATTATC  436

seq1  AAACAACACTAAGTGTTAATGTCAACTTCTCCATCATCTCAAACATAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACACTAAGTGTTAATGTCAACTTCTCCATCATCTCAAACATAGAC  486

seq1  CATAAGAAATGCTATATAGCAGCTGACCCAGGTTGTTAAATTAGGGAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAATGCTATATAGCAGCTGACCCAGGTTGTTAAATTAGGGAAGG  536

seq1  CTGAAAGAAGCTGAGAAGGGCAATTCTGTAGGAGAACCAGCAGTCTTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAAGCTGAGAAGGGCAATTCTGTAGGAGAACCAGCAGTCTTAAT  586

seq1  TAATTTGGACCCCCACAGTCTTTCAAACATTGGCCCACCAAACAGACAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGACCCCCACAGTCTTTCAAACATTGGCCCACCAAACAGACAGC  636

seq1  ATACACAAGCTGATATGAGGTCCCTAACACACACACAGTAGAGGACTTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAGCTGATATGAGGTCCCTAACACACACACAGTAGAGGACTTCC  686

seq1  AGGTCTGTGGTCATTCAGTGATGAAGCATGTAACCCATAAGAGACTGGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTGGTCATTCAGTGATGAAGCATGTAACCCATAAGAGACTGGAG  736

seq1  GCCCCAGGGAGTTTAGAAGTAAGGTGGGGTGGGTGGTGGGGGCATCCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGGAGTTTAGAAGTAAGGTGGGGTGGGTGGTGGGGGCATCCAAT  786

seq1  TGGAGATGAGGTGGGGTAGGGAGAAGGTATGGTTGTGGAGAAGTTGGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGAGGTGGGGTAGGGAGAAGGTATGGTTGTGGAGAAGTTGGAGG  836

seq1  GTGGATGGGTAGGGGTGGGGAAGGGAATATGGAGTGTAAAAAATGAATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGGTAGGGGTGGGGAAGGGAATATGGAGTGTAAAAAATGAATTA  886

seq1  CAAATAAAATTAAGTTAAAAAAATGCAATATAGTAAATTATTTTAGGTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAATTAAGTTAAAAAAATGCAATATAGTAAATTATTTTAGGTAG  936

seq1  GACCACAAATGGGGCACATGAATTAAGTACAGATACTATGAAACTCAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAAATGGGGCACATGAATTAAGTACAGATACTATGAAACTCAATT  986

seq1  TTTGATCTCTTATAGCTATAAATGGTAACATAAGAAACACAGATTCAGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCTTATAGCTATAAATGGTAACATAAGAAACACAGATTCAGCC  1036

seq1  AAGTGAATTGACACATACCTTTAATCTTAGTACTCAGGAGGCAGAGACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATTGACACATACCTTTAATCTTAGTACTCAGGAGGCAGAGACAG  1086

seq1  GAAGATCTCTGATTTGAGCCTTCCCTGGTCTACGTCTACATAGTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCTCTGATTTGAGCCTTCCCTGGTCTACGTCTACATAGTGAATTC  1136