BAC Information

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BAC

Clone NameB6Ng01-233G16
Chromosome3 (Build37)
Map Location 50,241,512 - 50,242,705
singlet/doubletsinglet
Overlap geneSlc7a11
Upstream geneLOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
Downstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233G16.bB6Ng01-233G16.g
ACCGA045484GA045485
length1,2111,150
definitionB6Ng01-233G16.b B6Ng01-233G16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgtcaagtagaggccattttttgtttttcagaagaattaaga
cattaagagatgaaagaaatagaacaaactagggataaaccagaaattaa
aaatgtgtgtgtcatatatatacatatatatgtatacacacacacacaca
tatatatatatgtatatatatatatatatacatacatacatacacacaca
aataaactttgaagagtatatatgaggtgacagagagacgtacagaagta
catccctgatagagaactcttagaaaagaaaaaagaaaaaaaaagtactc
tttttatcatcatttaacactagcaatttctaagtaacaaagaacaattg
ctaccaatgaagcctgcactactctgaagttcgctattaacaccctaaca
attgttcctgttagcagacacttagagctctgtctgcctttgtcacttct
gttaacttagctgagattttagtagtctgtgtcttctgtttatgggagag
caaggctccctaatgatttctaatgaactatgtgatcacaaagtgcaagt
cacatcccttacagcacaaaacaccggtgacacaagttgtacatgtgaca
tcacaggctcctcacaatgttgggggaaatttgctattcagagtgacttg
gcactattctatgccaagagagtcaggaaggggacagagccttagagcaa
tacaatcaaacagttttttgcaactgcagatcgcctgtttgcttaatgtg
aggaaatgaatcattcatgctgtgttaacttgattctttttcactgtttg
taaagcatcagccttgataatacactaagttgtttggcacagacattttc
ttagtcataaaagtaaagttaaatgtcctgatgacataatcaacaataaa
aaaaaaataaccctgtaattcctagcaacattataatagtgtctgctcag
gcccaaggtatatttatcaaagtgaattttggaagattccccctcatctt
cagattaaatgccttttctagaaaaaacattaaatattttataaacaaag
ttggaattaaagaaaaactttttttatgccttagggtctggtatttggtc
aactaagtcacatgacacacacaatcttgttattaagttccagccagtca
gaaggatccaggaaagtgattgagaatgaatagggtggaattcctaattg
ttttccatctc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcttca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagatgctggaaagaacccagat
gcccctcaacggaggaatggatacagaaaatgtggtacatttacccaatt
gagtactactcaggtattaaaaagaatgaatttatgaaattcctaaccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactctcacacaatatgtactcactgataagtggatattagcccaaaa
cctaggatacccaagatataagatacaatttgctaaacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgtgaa
caaaacacccatggaaggagttacagagacaaagttcggagctgagacga
aatgatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatatactagcaagattttttcaaaa
ggacccagatgtagctgtctcttgtgagactatgccggggtctagcaaac
acagaagtggatgctcatagtcagctattggatggatcacagggctccca
atggagagctagagaagtacccaggagctaaagggatctgcacctatagt
gacacatatgactacagtacccgagctcttgactctagctgcatatgtat
caaagatgcttagtccgcatcactgaaagagaagtcaatgaacacgtacc
tatatatgcagtcagaacgcagtccattagaattaatcaaattaaatatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50241512_50242705
seq2: B6Ng01-233G16.b_47_1257

seq1  GAATTCAATGTCAAGTAGAGGCCATTTTTTGTTTTTCAGAAGAATTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCAAGTAGAGGCCATTTTTTGTTTTTCAGAAGAATTAAGA  50

seq1  CATTAAGAGATGAAAGAAATAGAACAAACTAGGGATAAACCAGAAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGAGATGAAAGAAATAGAACAAACTAGGGATAAACCAGAAATTAA  100

seq1  AAATGTGTGTGTCATATATATACATATATATGTATACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGTGTCATATATATACATATATATGTATACACACACACACACA  150

seq1  TATATATATATGTATATATATATATATATACATACATACATACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGTATATATATATATATATACATACATACATACACACACA  200

seq1  AATAAACTTTGAAGAGTATATATGAGGTGACAGAGAGACGTACAGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTTGAAGAGTATATATGAGGTGACAGAGAGACGTACAGAAGTA  250

seq1  CATCCCTGATAGAGAACTCTTAGAAAAGAAAAAAGAAAAAAAAAGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGATAGAGAACTCTTAGAAAAGAAAAAAGAAAAAAAAAGTACTC  300

seq1  TTTTTATCATCATTTAACACTAGCAATTTCTAAGTAACAAAGAACAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCATCATTTAACACTAGCAATTTCTAAGTAACAAAGAACAATTG  350

seq1  CTACCAATGAAGCCTGCACTACTCTGAAGTTCGCTATTAACACCCTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATGAAGCCTGCACTACTCTGAAGTTCGCTATTAACACCCTAACA  400

seq1  ATTGTTCCTGTTAGCAGACACTTAGAGCTCTGTCTGCCTTTGTCACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCTGTTAGCAGACACTTAGAGCTCTGTCTGCCTTTGTCACTTCT  450

seq1  GTTAACTTAGCTGAGATTTTAGTAGTCTGTGTCTTCTGTTTATGGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTAGCTGAGATTTTAGTAGTCTGTGTCTTCTGTTTATGGGAGAG  500

seq1  CAAGGCTCCCTAATGATTTCTAATGAACTATGTGATCACAAAGTGCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCCCTAATGATTTCTAATGAACTATGTGATCACAAAGTGCAAGT  550

seq1  CACATCCCTTACAGCACAAAACACCGGTGACACAAGTTGTACATGTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCTTACAGCACAAAACACCGGTGACACAAGTTGTACATGTGACA  600

seq1  TCACAGGCTCCTCACAATGTTGGGGGAAATTTGCTATTCAGAGTGACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCTCCTCACAATGTTGGGGGAAATTTGCTATTCAGAGTGACTTG  650

seq1  GCACTATTCTATGCCAAGAGAGTCAGGAAGGGGGACAGAGCCTTAGAGCA  700
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCACTATTCTATGCCAAGAGAGTCAGGAA-GGGGACAGAGCCTTAGAGCA  699

seq1  ATACAATCAAACAGTTTTTTGCAACTGCAGATCGCCTGTTTGCTTAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCAAACAGTTTTTTGCAACTGCAGATCGCCTGTTTGCTTAATGT  749

seq1  GAGGAAATGAATCATTCATGCTGTGTTAACTTGATTCTTTTTCACTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGAATCATTCATGCTGTGTTAACTTGATTCTTTTTCACTGTTT  799

seq1  GTAAAGCATCAGCCTTGATAATACACTAAGTTGTTTGGCACAGACA-TTT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAAAGCATCAGCCTTGATAATACACTAAGTTGTTTGGCACAGACATTTT  849

seq1  CTTAGTCATAAAAGTAAAGTTAAATGTCCTGATGACATAATCAACAAT-A  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTAGTCATAAAAGTAAAGTTAAATGTCCTGATGACATAATCAACAATAA  899

seq1  AAAAAAAATAACCCTGTAATTCCTAGC-ACATTAT-ATAGTGTCTGCTCA  946
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  AAAAAAAATAACCCTGTAATTCCTAGCAACATTATAATAGTGTCTGCTCA  949

seq1  -GCCCAAGGTATAATTTATCAAAGTGAATTTT-GAAGATT-CCCCTCATC  993
       ||||||||||| ||||||||||||||||||| ||||||| |||||||||
seq2  GGCCCAAGGTAT-ATTTATCAAAGTGAATTTTGGAAGATTCCCCCTCATC  998

seq1  -TCAGA-TAAATGCCTTTTCTAG-AAAAACA-TAAATA-TTTATAAACAA  1038
       ||||| |||||||||||||||| ||||||| |||||| ||||||||| |
seq2  TTCAGATTAAATGCCTTTTCTAGAAAAAACATTAAATATTTTATAAAC-A  1047

seq1  AAGTTGGAATTTAAAGAAAACTTTTTTTATGCCTTAGGGTCT-GTATTTG  1087
      ||||||||||| ||  |||||||||||||||||||||||||| |||||||
seq2  AAGTTGGAATTAAAGAAAAACTTTTTTTATGCCTTAGGGTCTGGTATTTG  1097

seq1  TTCAACTAAGTCACATGACACAC---ATC-TGTAATT-AGTTCAAG-CAG  1131
       ||||||||||||||||||||||   ||| ||| ||| ||||| || |||
seq2  GTCAACTAAGTCACATGACACACACAATCTTGTTATTAAGTTCCAGCCAG  1147

seq1  TCAAGAGGATCCAGGAAAGTGA-TGAG-ATGAATA-GGTGGATTTTCCCT  1178
      |||  ||||||||||||||||| |||| ||||||| |||||| ||   | 
seq2  TCAGAAGGATCCAGGAAAGTGATTGAGAATGAATAGGGTGGAATT---CC  1194

seq1  TAATTG-TTTCCATCTC  1194
      |||||| ||||||||||
seq2  TAATTGTTTTCCATCTC  1211