BAC Information

Click to search

BAC

Clone NameB6Ng01-233L09
Chromosome3 (Build37)
Map Location 63,234,743 - 63,387,201
singlet/doubletdoublet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233L09.bB6Ng01-233L09.g
ACCGA045688GA045689
length1,109777
definitionB6Ng01-233L09.b B6Ng01-233L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,234,743 - 63,235,853)(63,386,431 - 63,387,201)
sequence
gaattcatagctaggagtctctgatttctagcttaaaaaacaaaagagga
gtagccaagtgcagaacctcacagctgtgattgggtccaacttattgttt
ttattaattaaaggatatatggacgttaaagtcatgcacagatgtcagca
agcgctgagttcgaagctattgccttaacaattaaaattggttttccaca
gtgggtttgaatccatcccttttgttaaatgttacccccaagaaaagaga
aatctataatccttgaatgctgaaaatcatgtcaggaactttatctgtca
taatcttttttcctgtgggtttagttttatcatttgttttgaggtgggtt
ctaactatgtagcccaagctggccttgaagtcctcctacctcagtttttt
gagagatggattacaggtgtggagaacaactggttactgtgtttgctgag
caaagtctgcccacgggccatggaaactggatatcatgctctcatcttga
caggaaaactgaagattagagaaattgtagaatgagtccaaagacattca
gtatgtaagtgttggaaaagcactcagcgttcattaagtgagatctttct
atagagaagaaaaaggttgtatcagcttcctctctgtggtccttagaaaa
agcccacgattgcttaaagactatattatcaaacaacttcagtctgccta
cttttaatttacattgtatgaaatattatttcagacatgtgtgaggagcc
tatctttccaagcatagtttcctgtctttttatctccttatatccactcg
ggaatttaatccacaagttctatctccctcatggtgcctgcctctaccaa
gagaggaaaagatgcctgccttgttctctatcatatcaccaaagcttgca
acactaaagtgttcagccagtgtttgctgaatgaataaccgaattagtga
tttcttcattcttactgaccagtttccttcaccaacttcctcagttgaca
ttttcttcttattcagattctagatatatttggtataatgctagtcgagc
atagctctgtatacaatactcaagggctagagagaatgggtctgtgtttg
aaaagcatt
gaattcaaatggttgttaaagagagcacggggagtgggggtgagaagctc
tgaatgctgccaggaccggggagaggagatgccaggaaacctgacagttt
tataatgcctcccgagagggtggtagtgagagtccgaggagacagcgcta
tgcttcctctgtgcagcaggactttagccacctacgtctctaactcagaa
ggtttcctcttcttatgaacctggatttcgtgttttgctagattccttga
ccatggttagctcagaaccttcatttgggcctttggcggttggaactccg
taggtgggatagccttcaacagccttctgtctgtcaagccctgctgtcca
gacgctccattctctgggccttggaggtggctgagctggagcttgggaat
agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctttgaagagacagagg
gacaagaggatgatctgcaaagggacaagagagagtcttccagaaattaa
aatgtagtcagtgtgcacgttggactacccaagcctttttggagtaaatg
atggagttcagttctgctcactgtccccagggtatcaaactaaatttggg
aaatctgctctgagtctcctatcaatagagaagagcctggggatgtctag
gtccctccccagcattctgcagtctacaaagaaacagaaaaacaaaagct
taattatgagtattgcctgaaccccctgggaaagaactctcttaaaagag
ataacttttaagtggggtcttggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63234743_63235853
seq2: B6Ng01-233L09.b_47_1155

seq1  GAATTCATAGCTAGGAGTCTCTGATTTCTAGCTTAAAAAACAAAAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCTAGGAGTCTCTGATTTCTAGCTTAAAAAACAAAAGAGGA  50

seq1  GTAGCCAAGTGCAGAACCTCACAGCTGTGATTGGGTCCAACTTATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAAGTGCAGAACCTCACAGCTGTGATTGGGTCCAACTTATTGTTT  100

seq1  TTATTAATTAAAGGATATATGGACGTTAAAGTCATGCACAGATGTCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTAAAGGATATATGGACGTTAAAGTCATGCACAGATGTCAGCA  150

seq1  AGCGCTGAGTTCGAAGCTATTGCCTTAACAATTAAAATTGGTTTTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGAGTTCGAAGCTATTGCCTTAACAATTAAAATTGGTTTTCCACA  200

seq1  GTGGGTTTGAATCCATCCCTTTTGTTAAATGTTACCCCCAAGAAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTGAATCCATCCCTTTTGTTAAATGTTACCCCCAAGAAAAGAGA  250

seq1  AATCTATAATCCTTGAATGCTGAAAATCATGTCAGGAACTTTATCTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAATCCTTGAATGCTGAAAATCATGTCAGGAACTTTATCTGTCA  300

seq1  TAATCTTTTTTCCTGTGGGTTTAGTTTTATCATTTGTTTTGAGGTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTTTTCCTGTGGGTTTAGTTTTATCATTTGTTTTGAGGTGGGTT  350

seq1  CTAACTATGTAGCCCAAGCTGGCCTTGAAGTCCTCCTACCTCAGTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATGTAGCCCAAGCTGGCCTTGAAGTCCTCCTACCTCAGTTTTTT  400

seq1  GAGAGATGGATTACAGGTGTGGAGAACAACTGGTTACTGTGTTTGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGATTACAGGTGTGGAGAACAACTGGTTACTGTGTTTGCTGAG  450

seq1  CAAAGTCTGCCCACGGGCCATGGAAACTGGATATCATGCTCTCATCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTGCCCACGGGCCATGGAAACTGGATATCATGCTCTCATCTTGA  500

seq1  CAGGAAAACTGAAGATTAGAGAAATTGTAGAATGAGTCCAAAGACATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAACTGAAGATTAGAGAAATTGTAGAATGAGTCCAAAGACATTCA  550

seq1  GTATGTAAGTGTTGGAAAAGCACTCAGCGTTCATTAAGTGAGATCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGTGTTGGAAAAGCACTCAGCGTTCATTAAGTGAGATCTTTCT  600

seq1  ATAGAGAAGAAAAAGGTTGTATCAGCTTCCTCTCTGTGGTCCTTAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAGAAAAAGGTTGTATCAGCTTCCTCTCTGTGGTCCTTAGAAAA  650

seq1  AGCCCACGATTGCTTAAAGACTATATTATCAAACAACTTCAGTCTGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACGATTGCTTAAAGACTATATTATCAAACAACTTCAGTCTGCCTA  700

seq1  CTTTTAATTTACATTGTATGAAATATTATTTCAGACATGTGTGAGGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTTACATTGTATGAAATATTATTTCAGACATGTGTGAGGAGCC  750

seq1  TATCTTTCCAAGCATAGTTTCCTGTCTTTTTATCTCCTTATATCCACTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCAAGCATAGTTTCCTGTCTTTTTATCTCCTTATATCCACTCG  800

seq1  GGAATTTAATCCACAAGTTCTATCTCCCTCATGGTGCCTGCCTCTACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTAATCCACAAGTTCTATCTCCCTCATGGTGCCTGCCTCTACCAA  850

seq1  GAGAGGAAAAGATGCCTGCCTTGTTCTCTATCATATCACCAAAGCTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAAAGATGCCTGCCTTGTTCTCTATCATATCACCAAAGCTTGCA  900

seq1  ACACTAAAGTGTTCAGCCAGTGTTTGCTGAATGAATAACCGAATTAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAGTGTTCAGCCAGTGTTTGCTGAATGAATAACCGAATTAGTGA  950

seq1  TTTCTTCATTCTTACTGACCAGTTTCCTTCA-CAACTTCCTCAGGTTGAC  999
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TTTCTTCATTCTTACTGACCAGTTTCCTTCACCAACTTCCTCA-GTTGAC  999

seq1  ATTTTCTTCTTATTTCAGATTCTAGATATATTTGGTATAATTGCTAGTCG  1049
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  ATTTTCTTCTTA-TTCAGATTCTAGATATATTTGGTATAA-TGCTAGTCG  1047

seq1  AGCATAGCTCTGTAATACAATAACTCAGGGGCTAGAGAG-ATGGGTCTGT  1098
      ||||||||||||| ||||||| ||||| ||||||||||| ||||||||||
seq2  AGCATAGCTCTGT-ATACAAT-ACTCAAGGGCTAGAGAGAATGGGTCTGT  1095

seq1  GGTTG-AGAGCATT  1111
      | ||| | ||||||
seq2  GTTTGAAAAGCATT  1109

seq1: chr3_63386431_63387201
seq2: B6Ng01-233L09.g_63_839 (reverse)

seq1  ACCTCCAAGA-CCCACTTAAATGTCATCTCTTTCTAGAGAGTTCTGTCC-  48
      |||||||||| |||||||||| || ||||||||  |||||||||| ||| 
seq2  ACCTCCAAGACCCCACTTAAAAGTTATCTCTTTTAAGAGAGTTCTTTCCC  50

seq1  -AGGGGTTCAGGCAATACTCATAATTAAGCTTTTG-TTTTCTGTTTCTTT  96
        ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGGGGTTCAGGCAATACTCATAATTAAGCTTTTGTTTTTCTGTTTCTTT  100

seq1  GTAGACTGCAGAATGCT-GGGAGGGACCTAGACAT-CCCAGGCTCTTACT  144
      ||||||||||||||||| ||||||||||||||||| ||||||||||| ||
seq2  GTAGACTGCAGAATGCTGGGGAGGGACCTAGACATCCCCAGGCTCTT-CT  149

seq1  CTATTGATAGGAGACTCAGAGCAGATTT-CCAAATTTAGTTTGATACCCT  193
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTATTGATAGGAGACTCAGAGCAGATTTCCCAAATTTAGTTTGATACCCT  199

seq1  GGGGACAGTGAGCAGAACTGAACTCCATCATTTACTCCAAAAAGGCTTGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGTGAGCAGAACTGAACTCCATCATTTACTCCAAAAAGGCTTGG  249

seq1  GTAGTCCAACGTGCACACTGACTACATTTTAATTTCTGGAAGACTCTCTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCAACGTGCACACTGACTACATTTTAATTTCTGGAAGACTCTCTC  299

seq1  TTGTCCCTTTGCAGATCATCCTCTTGTCCCTCTGTCTCTTCAAAGGCACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTTTGCAGATCATCCTCTTGTCCCTCTGTCTCTTCAAAGGCACA  349

seq1  CACACACACACACACACACACACACACTATTCCCAAGCTCCAGCTCAGCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACTATTCCCAAGCTCCAGCTCAGCC  399

seq1  ACCTCCAAGGCCCAGAGAATGGAGCGTCTGGACAGCAGGGCTTGACAGAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAGGCCCAGAGAATGGAGCGTCTGGACAGCAGGGCTTGACAGAC  449

seq1  AGAAGGCTGTTGAAGGCTATCCCACCTACGGAGTTCCAACCGCCAAAGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGTTGAAGGCTATCCCACCTACGGAGTTCCAACCGCCAAAGGC  499

seq1  CCAAATGAAGGTTCTGAGCTAACCATGGTCAAGGAATCTAGCAAAACACG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAAGGTTCTGAGCTAACCATGGTCAAGGAATCTAGCAAAACACG  549

seq1  AAATCCAGGTTCATAAGAAGAGGAAACCTTCTGAGTTAGAGACGTAGGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGGTTCATAAGAAGAGGAAACCTTCTGAGTTAGAGACGTAGGTG  599

seq1  GCTAAAGTCCTGCTGCACAGAGGAAGCATAGCGCTGTCTCCTCGGACTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGTCCTGCTGCACAGAGGAAGCATAGCGCTGTCTCCTCGGACTCT  649

seq1  CACTACCACCCTCTCGGGAGGCATTATAAAACTGTCAGGTTTCCTGGCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCACCCTCTCGGGAGGCATTATAAAACTGTCAGGTTTCCTGGCAT  699

seq1  CTCCTCTCCCCGGTCCTGGCAGCATTCAGAGCTTCTCACCCCCACTCCCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCCCGGTCCTGGCAGCATTCAGAGCTTCTCACCCCCACTCCCC  749

seq1  GTGCTCTCTTTAACAACCATTTGAATTC  771
      ||||||||||||||||||||||||||||
seq2  GTGCTCTCTTTAACAACCATTTGAATTC  777