BAC Information

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BAC

Clone NameB6Ng01-233L24
Chromosome3 (Build37)
Map Location 63,236,889 - 63,350,072
singlet/doubletdoublet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233L24.bB6Ng01-233L24.g
ACCGA045716GA045717
length6311,142
definitionB6Ng01-233L24.b B6Ng01-233L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,236,889 - 63,237,583)(63,348,942 - 63,350,072)
sequence
gaattcctgtctgatctacaaggcaggcaaagagaggaagattggagctg
gtgtgggtttttaaaacctcaaagcccatgccctgtggcacacttcctcc
aacaaggccatcttcctcattctttctaaacagttccaccaacctggaac
aagcattcaaatataagaccctaaatgggccatttgtattcaaatcacca
aaatggcccactccacaactcattaaggtctgtgagaagcaccatttcgg
ttagttattttgtgaatatttgaatttgttaggaaatgcctccagttttg
tgtaaccagggcttaaaatggtttaagaaattaaaacttatctcaacaaa
tgaaagaagtctgaaacagaggcatcctgaattgcagctcggcaaagcca
tcaagtttccaggacacttccaactttctacttattcagctgcaagtgtc
tgtgtgtatcttggtgtgtatatatttgtgtatgtctgtgtgtgtataac
tatgtgtatatatatatatatatatatatatatatatatatacacacaca
cacacacacatatacacacacacacacacacacacacacacacacacaca
catatatatatatatatatatatgtgtgtgt
gaattctttgggataatgcatgtttccatcataaaactcctcctaatatt
ccctgacctctaagcaggtgtctttacagaagtctcatatcttagttgtg
atatagattgtcagctttttagaatataaagattattctggatgatgcta
taattctgttcacctgtgagtttctcttgaacttatctcatgatatgcac
tgtttcttagacagttaacagaaaagttccatgtcgtccctgtcaggttc
agataagatgagtaagccagagggagcaggacatgtcagacatggaaaga
attcggcagcctagcaacaagatgtcacaaggtagtgtgatctgtgtcag
tatgattgcactggaaaaggcattattccagaaatgtgacagcaaaatat
agataagcacagagtgaactaaattcctgtgatggcataaaataagggct
gttatagatttctgaatatggcataatgaaaatgactatacatttgcctt
cctgtgcataaaacaaagtgtgtctgcacacaggtttttatgaaatggaa
tgaagtttatttgctgtatgtcactctttggcttctttttgagttgatta
ctttaagtagtagctagacccctcttgtattgttattaacacaggaggag
ggtctgagtttgttcttgtgaatttctggggacttcatgcattctatttt
gcctaaggagtctatttggcacatgggtgtgccttataccctcaacagat
caagacaaaggtattatcaactggagacatttgggactctgggacatatc
atttgcaaatcacttgtgagtggctcagtgcctggctatctggttgtcag
tgtgctaatatctaaatgagcatctgttcgttaatggccacctgtgacaa
tgatatgttctaggctggtccattaacaagaataaatcacttcaatgtgc
tgcaatatactgttgtattccttccatgagccagattatcttctgtttcc
acaccaccccaccagcatctgaagcccttctagccagaagccaatgcatg
actgagtctacaaacatagtcacaagttctttggtttggcttccccaaac
tgaacctcacaatagccatgagcacagtggctcatcagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63236889_63237583
seq2: B6Ng01-233L24.b_48_678

seq1  GAATTCCTGTCTGATCTACAAGGCAGGCAAAGAGAGGAAGATTGGAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTGATCTACAAGGCAGGCAAAGAGAGGAAGATTGGAGCTG  50

seq1  GTGTGGGTTTTTAAAACCTCAAAGCCCATGCCCTGTGGCACACTTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTTTTTAAAACCTCAAAGCCCATGCCCTGTGGCACACTTCCTCC  100

seq1  AACAAGGCCATCTTCCTCATTCTTTCTAAACAGTTCCACCAACCTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCCATCTTCCTCATTCTTTCTAAACAGTTCCACCAACCTGGAAC  150

seq1  AAGCATTCAAATATAAGACCCTAAATGGGCCATTTGTATTCAAATCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCAAATATAAGACCCTAAATGGGCCATTTGTATTCAAATCACCA  200

seq1  AAATGGCCCACTCCACAACTCATTAAGGTCTGTGAGAAGCACCATTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCCACTCCACAACTCATTAAGGTCTGTGAGAAGCACCATTTCGG  250

seq1  TTAGTTATTTTGTGAATATTTGAATTTGTTAGGAAATGCCTCCAGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATTTTGTGAATATTTGAATTTGTTAGGAAATGCCTCCAGTTTTG  300

seq1  TGTAACCAGGGCTTAAAATGGTTTAAGAAATTAAAACTTATCTCAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCAGGGCTTAAAATGGTTTAAGAAATTAAAACTTATCTCAACAAA  350

seq1  TGAAAGAAGTCTGAAACAGAGGCATCCTGAATTGCAGCTCGGCAAAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGTCTGAAACAGAGGCATCCTGAATTGCAGCTCGGCAAAGCCA  400

seq1  TCAAGTTTCCAGGACACTTCCAACTTTCTACTTATTCAGCTGCAAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCCAGGACACTTCCAACTTTCTACTTATTCAGCTGCAAGTGTC  450

seq1  TGTGTGTATCTTGGTGTGTATATATTTGTGTATGTCTGTGTGTGTATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATCTTGGTGTGTATATATTTGTGTATGTCTGTGTGTGTATAAC  500

seq1  TATGTGTATATATATATATATATATATATATATATATATATGTATATATA  550
      |||||||||||||||||||||||||||||||||||||||||  | | | |
seq2  TATGTGTATATATATATATATATATATATATATATATATATACACACACA  550

seq1  CATATATATATGTGTGTGTGTATGTATATATATAAACATATATACACACA  600
      || |                     | | ||||| ||| | | |||||||
seq2  CACA--------------------CACACATATACACACACACACACACA  580

seq1  CACACATATATCTGTGAGTTTGTTTGTATATCTACATGTATATGTAGCTG  650
      ||||||                                            
seq2  CACACA--------------------------------------------  586

seq1  TATATATATATATATATATATATATATATATATATATGTGTGTGT  695
       | | | | | | | ||||||||||||||||||||||||||||||
seq2  CACACACACACACACATATATATATATATATATATATGTGTGTGT  631

seq1: chr3_63348942_63350072
seq2: B6Ng01-233L24.g_65_1206 (reverse)

seq1  AAAGCTGATGA-CCACTGTGCTTTATGGCTA-TGTGAG--TCAG-TGGGG  45
      ||||||||||| ||||||||| | ||||||| ||||||  |||| | |||
seq2  AAAGCTGATGAGCCACTGTGC-TCATGGCTATTGTGAGGTTCAGTTTGGG  49

seq1  AAAGCCAAAC--AAGAAC-TGTGACTATG-TTGTAGACTCAGTCATGCA-  90
       |||||||||  |||||| |||||||||| ||||||||||||||||||| 
seq2  GAAGCCAAACCAAAGAACTTGTGACTATGTTTGTAGACTCAGTCATGCAT  99

seq1  TGGC-TCTGGCTAGAAGGGCTTCAGATGCTG--TGGGTGGTGTGGAAAAC  137
      |||| ||||||||||||||||||||||||||   ||||||||||| ||||
seq2  TGGCTTCTGGCTAGAAGGGCTTCAGATGCTGGTGGGGTGGTGTGG-AAAC  148

seq1  AGAAGATAATCTGGCTCATGGAAGGAATACAACAGTATATTTGCAGCACA  187
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAGATAATCTGGCTCATGGAAGGAATACAACAGTATA-TTGCAGCACA  197

seq1  TTGAAGTGATTTAT--CTGTTAATGGACCAGCCTAGAACATATCATTGTC  235
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  TTGAAGTGATTTATTCTTGTTAATGGACCAGCCTAGAACATATCATTGTC  247

seq1  ACAGGTGGCCATTAACGAACAGATGCTCATTTAGATATTAGCACACTGAC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGGCCATTAACGAACAGATGCTCATTTAGATATTAGCACACTGAC  297

seq1  AACCAGATAGCCAGGCACCTGAGCCACTCACAAGTGATTTGCAAATGATA  335
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACCAGATAGCCAGGCA-CTGAGCCACTCACAAGTGATTTGCAAATGATA  346

seq1  TGTCCCAGAGTCCCAAATGTCTCCAGTTGATAATACCTTTGTCTTGATCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGAGTCCCAAATGTCTCCAGTTGATAATACCTTTGTCTTGATCT  396

seq1  GTTGAGGGTATAAGGCACACCCATGTGCCAAATAGACTCCTTAGGCAAAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGTATAAGGCACACCCATGTGCCAAATAGACTCCTTAGGCAAAA  446

seq1  TAGAATGCATGAAGTCCCCAGAAATTCACAAGAACAAACTCAGACCCTCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCATGAAGTCCCCAGAAATTCACAAGAACAAACTCAGACCCTCC  496

seq1  TCCTGTGTTAATAACAATACAAGAGGGGTCTAGCTACTACTTAAAGTAAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTAATAACAATACAAGAGGGGTCTAGCTACTACTTAAAGTAAT  546

seq1  CAACTCAAAAAGAAGCCAAAGAGTGACATACAGCAAATAAACTTCATTCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAAAAAGAAGCCAAAGAGTGACATACAGCAAATAAACTTCATTCC  596

seq1  ATTTCATAAAAACCTGTGTGCAGACACACTTTGTTTTATGCACAGGAAGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAAAAACCTGTGTGCAGACACACTTTGTTTTATGCACAGGAAGG  646

seq1  CAAATGTATAGTCATTTTCATTATGCCATATTCAGAAATCTATAACAGCC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTATAGTCATTTTCATTATGCCATATTCAGAAATCTATAACAGCC  696

seq1  CTTATTTTATGCCATCACAGGAATTTAGTTCACTCTGTGCTTATCTATAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTATGCCATCACAGGAATTTAGTTCACTCTGTGCTTATCTATAT  746

seq1  TTTGCTGTCACATTTCTGGAATAATGCCTTTTCCAGTGCAATCATACTGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTCACATTTCTGGAATAATGCCTTTTCCAGTGCAATCATACTGA  796

seq1  CACAGATCACACTACCTTGTGACATCTTGTTGCTAGGCTGCCGAATTCTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCACACTACCTTGTGACATCTTGTTGCTAGGCTGCCGAATTCTT  846

seq1  TCCATGTCTGACATGTCCTGCTCCCTCTGGCTTACTCATCTTATCTGAAC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCTGACATGTCCTGCTCCCTCTGGCTTACTCATCTTATCTGAAC  896

seq1  CTGACAGGGACGACATGGAACTTTTCTGTTAACTGTCTAAGAAACAGTGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGGACGACATGGAACTTTTCTGTTAACTGTCTAAGAAACAGTGC  946

seq1  ATATCATGAGATAAGTTCAAGAGAAACTCACAGGTGAACAGAATTATAGC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGAGATAAGTTCAAGAGAAACTCACAGGTGAACAGAATTATAGC  996

seq1  ATCATCCAGAATAATCTTTATATTCTAAAAAGCTGACAATCTATATCACA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAGAATAATCTTTATATTCTAAAAAGCTGACAATCTATATCACA  1046

seq1  ACTAAGATATGAGACTTCTGTAAAGACACCTGCTTAGAGGTCAGGGAATA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATATGAGACTTCTGTAAAGACACCTGCTTAGAGGTCAGGGAATA  1096

seq1  TTAGGAGGAGTTTTATGATGGAAACATGCATTATCCCAAAGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGAGTTTTATGATGGAAACATGCATTATCCCAAAGAATTC  1142