BAC Information

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BAC

Clone NameB6Ng01-234E08
Chromosome3 (Build37)X (Build37)
Map Location 16,240,057 - 16,241,22583,780,756 - 83,781,802
singlet/doubletsingletsinglet
Overlap geneLOC100040034
Upstream geneLOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
Downstream geneLOC100040059, EG383936, LOC622737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234E08.bB6Ng01-234E08.g
ACCGA046081GA046082
length1,1681,144
definitionB6Ng01-234E08.b B6Ng01-234E08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,240,057 - 16,241,225)(83,780,756 - 83,781,802)
sequence
gaattccctggtggaatttttagggtcacttatatatgctatcatatcat
ctgcaaaagtgatatttttacttctctctttccaatttgtatccccttga
tctctttttgttgtctaattgctctctctaggacttcaagtacaatgttg
aataggtagggcgagagtggacagcctggtctagtccctgattttagtga
gattgcatccagcttctcaccatttactttgatgttggctattggtttgc
tgtagattgcttttatcatgtttaggtatgggccttgaattcctgatctt
tccaagacttttatcatgaatgggtgttggattttgtcaaatgctttctc
agcatctaacgagatgatcatttggtttttgtctttgagtttgtttatat
actggattacgttgattgcatctgttttcttatgtggacatttatataca
gttcacatgcatgagtatgcacatctagaagtctgtacacctatggcagg
tatcttccctagtcactctctaccctatttttttagacatggtctctcaa
tgaagctagaacttgctgattggctggactgtctggcaagaatgctaata
gaatcttctggactctattttatctctgtccctcagcattggaggagcag
acatatgctcccagacccagatttttatgttgattttgggattataaact
caggagtttatccacttggctctatcaccagactcagtcttgttgtttag
aagagattttttacttttgttgaatgtcttttatatttgaattatgtgct
cacaaaaatatggacccatgagaaagttgatcttgcttccttgtgagtgt
cacatcatgcacctcagtcccacccactcgtcttagacatcctgtcattt
gtattcacccctctgcctttgcaacatctacccaaaagaaagtaaaaaca
aacaaaaacaaacaaaacaaaaaacgacacacaacaagtatagaaaacat
ttcatcttggaacctctagtgtatatccacatatatcctttttattcaca
taatctttactgaaatgtgcattgcagtgagtcattgggtctgtttggag
cctcagaatctgctaacactattctatcttgaatccctcacccaagacac
gttgttatcctgtggtta

gaattcccaacaaggctaaagaagccactgttgtagggtaatgatctaat
gtcctcccagtggatattttggaatggatccataacaatgggacttcttg
ccacaataatcctgtgggttgcatctcagagggtaatgttatcaaaatga
tgggtaactcttctctataacgctgaagctgggcttaaatcaattcttct
tccactagggtaagggcctttctagcctcaggtgttaattcccttttgga
acttaactctgagtctccttctaaaatttgaaacagaggttttaatttaa
catttgggatcttcaaatagggccgaatccaattgatatcgcctaacaat
ttctaaaaatcatttaaagtatgcaaggaatcaaccctcaactgtatttt
ttgaggccaaatggccgtaggggcaatccttgttcctaaataggacacta
tttttaacaaatccctaccccataaagtaatgggcagctcaagcacatat
ggttgaaacaccccatcatgcccttccttatctttccaagggagcatcct
ggcacttatgtctgggctctttgcatagcccaggtctggtaatatttgtt
ctgactcctgaatcggccatccttttgtccagtccttaaaccaaaaggca
gtaagaaaaattacccaaatggatagaaaaagaaagtaatccatagacta
ttaccttcttactttcactttctcgtctccagagccggagagccttattg
tctctttactgagagcctaattgtctctttaccaagagcctaattgtctc
tttaccaagagcctaatcccaaccccgggatggtgagttacttaccgtac
tcatcctgtcgacagaccttaactacagaaagttctgaacctcttcggtg
ggggagtcaggtcccgggttttggcaccatttgttgcgtccaactggacc
agcaaggaaaacacaaccaccgggttctcttaaagcagtttactcagcag
ctctctctcaatccccaaacctcggggtacagcattttatcactcaagca
caaccacgcttcacatcacacagtcatatcacctcacaagcagccttgct
cagcaatcaggatcagtggaccatccacaaaattggattgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16240057_16241225
seq2: B6Ng01-234E08.b_47_1214

seq1  GAATTCCCTGGTGGAATTTTTAGGGTCACTTATATATGCTATCATATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGTGGAATTTTTAGGGTCACTTATATATGCTATCATATCAT  50

seq1  CTGCAAAAGTGATATTTTTACTTCTCTCTTTCCAATTTGTATCCCCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAGTGATATTTTTACTTCTCTCTTTCCAATTTGTATCCCCTTGA  100

seq1  TCTCTTTTTGTTGTCTAATTGCTCTCTCTAGGACTTCAAGTACAATGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTGTTGTCTAATTGCTCTCTCTAGGACTTCAAGTACAATGTTG  150

seq1  AATAGGTAGGGCGAGAGTGGACAGCCTGGTCTAGTCCCTGATTTTAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTAGGGCGAGAGTGGACAGCCTGGTCTAGTCCCTGATTTTAGTGA  200

seq1  GATTGCATCCAGCTTCTCACCATTTACTTTGATGTTGGCTATTGGTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATCCAGCTTCTCACCATTTACTTTGATGTTGGCTATTGGTTTGC  250

seq1  TGTAGATTGCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTGCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTT  300

seq1  TCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTC  350

seq1  AGCATCTAACGAGATGATCATTTGGTTTTTGTCTTTGAGTTTGTTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAACGAGATGATCATTTGGTTTTTGTCTTTGAGTTTGTTTATAT  400

seq1  ACTGGATTACGTTGATTGCATCTGTTTTCTTATGTGGACATTTATATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTACGTTGATTGCATCTGTTTTCTTATGTGGACATTTATATACA  450

seq1  GTTCACATGCATGAGTATGCACATCTAGAAGTCTGTACACCTATGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATGCATGAGTATGCACATCTAGAAGTCTGTACACCTATGGCAGG  500

seq1  TATCTTCCCTAGTCACTCTCTACCCTATTTTTTTAGACATGGTCTCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCCTAGTCACTCTCTACCCTATTTTTTTAGACATGGTCTCTCAA  550

seq1  TGAAGCTAGAACTTGCTGATTGGCTGGACTGTCTGGCAAGAATGCTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAGAACTTGCTGATTGGCTGGACTGTCTGGCAAGAATGCTAATA  600

seq1  GAATCTTCTGGACTCTATTTTATCTCTGTCCCTCAGCATTGGAGGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCTGGACTCTATTTTATCTCTGTCCCTCAGCATTGGAGGAGCAG  650

seq1  ACATATGCTCCCAGACCCAGATTTTTATGTTGATTTTGGGATTATAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCTCCCAGACCCAGATTTTTATGTTGATTTTGGGATTATAAACT  700

seq1  CAGGAGTTTATCCACTTGGCTCTATCACCAGACTCAGTCTTGTTGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTATCCACTTGGCTCTATCACCAGACTCAGTCTTGTTGTTTAG  750

seq1  AAGAGATTTTTTACTTTTGTTGAATGTCTTTTATATTTGAATTATGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTTTTTACTTTTGTTGAATGTCTTTTATATTTGAATTATGTGCT  800

seq1  CACAAAAATATGGACCCATGAGAAAGTTGATCTTGCTTCCTTGTGAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAATATGGACCCATGAGAAAGTTGATCTTGCTTCCTTGTGAGTGT  850

seq1  CACATCATGCACCTCAGTCCCACCCACTCGTCTTAGACATCCTGTCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATGCACCTCAGTCCCACCCACTCGTCTTAGACATCCTGTCATTT  900

seq1  GTATTCA-CCCTCTGCCTTTGCAACATCTACCCAAAAGAAAGTAAAAACA  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  GTATTCACCCCTCTGCCTTTGCAACATCTACCCAAAAGAAAGTAAAAAC-  949

seq1  AAACAAAAACAAAACAAAACAAAAAACGACAACAACAAAACAAAGTATAG  999
      |||||||||| |||||||||||||||||||    ||| ||| ||||||||
seq2  AAACAAAAAC-AAACAAAACAAAAAACGAC----ACACAAC-AAGTATAG  993

seq1  AAAACATTTCATCTTGGAACCTCTAGTGTATATCCCACAATATATCC-TT  1048
      ||||||||||||||||||||||||||||||||| |||| |||||||| ||
seq2  AAAACATTTCATCTTGGAACCTCTAGTGTATAT-CCAC-ATATATCCTTT  1041

seq1  TTATTCACAT-ATCTTTACTTGAAATGTGCATTGCAGTGAGTCATT-GGT  1096
      |||||||||| |||||||| |||||||||||||||||||||||||| |||
seq2  TTATTCACATAATCTTTAC-TGAAATGTGCATTGCAGTGAGTCATTGGGT  1090

seq1  CTGTTTTGAGGCCTCAGAATCTGCT-ACACTATCATCT-TTGAAT-CCTC  1143
      |||||| || ||||||||||||||| |||||||  | | |||||| ||||
seq2  CTGTTTGGA-GCCTCAGAATCTGCTAACACTATTCTATCTTGAATCCCTC  1139

seq1  A-CCAGGACAC--TGTTATCCTGTTGTTA  1169
      | ||| |||||  ||||||||||| ||||
seq2  ACCCAAGACACGTTGTTATCCTGTGGTTA  1168


seq1: chrX_83780756_83781802
seq2: B6Ng01-234E08.g_209_1205

seq1  TGATGGGTAACCCTTCTCGACAACACTGAAGCTGGACTTTAATCAGTTCT  50
      ||||||||||| |||||| | ||| |||||||||| ||| ||||| ||||
seq2  TGATGGGTAACTCTTCTCTATAACGCTGAAGCTGGGCTTAAATCAATTCT  50

seq1  TCTTCCACTACGGTAAGGGCCTTTCTAGCCTCAGGTGTTAATTCCCTTTT  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACTAGGGTAAGGGCCTTTCTAGCCTCAGGTGTTAATTCCCTTTT  100

seq1  GGAACTTAACTCTGAGTCTCCTTCTAAAATTTGAAACAGAGGTTTTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTAACTCTGAGTCTCCTTCTAAAATTTGAAACAGAGGTTTTAATT  150

seq1  TAACATTTGGGATCTTCAAATAGAGCCGAATCCAATTGATATTGCCTAGC  200
      ||||||||||||||||||||||| |||||||||||||||||| ||||| |
seq2  TAACATTTGGGATCTTCAAATAGGGCCGAATCCAATTGATATCGCCTAAC  200

seq1  AATTTCTGAAAATGATTTAAAGTATGCAAGGAATCAACCCTCAACTGTAT  250
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAAAAATCATTTAAAGTATGCAAGGAATCAACCCTCAACTGTAT  250

seq1  CTTTTGAGGCCAAATGGCTGTAGGGGCGATCCTTGCTCCTAAATAGGACA  300
       ||||||||||||||||| |||||||| ||||||| ||||||||||||||
seq2  TTTTTGAGGCCAAATGGCCGTAGGGGCAATCCTTGTTCCTAAATAGGACA  300

seq1  CTATTTTCAACAAATCCCTACCCCATAAGGCAATGGGCAGCTCAAGCACA  350
      ||||||| |||||||||||||||||||| | |||||||||||||||||||
seq2  CTATTTTTAACAAATCCCTACCCCATAAAGTAATGGGCAGCTCAAGCACA  350

seq1  TATGGTTGAAACATCCCATCATGCCCTTCCTTATCTTTCCAAGGGAACAT  400
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TATGGTTGAAACACCCCATCATGCCCTTCCTTATCTTTCCAAGGGAGCAT  400

seq1  CCTGGCACTTATGTCTGGGCTCTTTGCAATGCCCAGGCCTGGTAATATTT  450
      ||||||||||||||||||||||||||||  ||||||| ||||||||||||
seq2  CCTGGCACTTATGTCTGGGCTCTTTGCATAGCCCAGGTCTGGTAATATTT  450

seq1  GTTCTGACTCCTGAATCGGCCATCCTTTTGGCCAGTCCTTAAACCAAAAA  500
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  GTTCTGACTCCTGAATCGGCCATCCTTTTGTCCAGTCCTTAAACCAAAAG  500

seq1  GCAGTAAGAAAAATTACCCAAATGGCTAGAAAAAGAAAGTAATCCATAGA  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAGTAAGAAAAATTACCCAAATGGATAGAAAAAGAAAGTAATCCATAGA  550

seq1  CTGTCCCTATTACCCTCTTACTTTCACTTTCTCATTTCCAGAGCCGGAGA  600
            |||||||| |||||||||||||||||| | ||||||||||||||
seq2  ------CTATTACCTTCTTACTTTCACTTTCTCGTCTCCAGAGCCGGAGA  594

seq1  GCCTTATTGTCTC-TTACCGAGAGCCTAATTGTCTCTTTACCAAGAGCCT  649
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GCCTTATTGTCTCTTTACTGAGAGCCTAATTGTCTCTTTACCAAGAGCCT  644

seq1  TATTGTCTCTTTACCAAGAGCCTTATTGTCTCTTTACCGAGAGCCTAATC  699
       |||||||||||||||                       |||||||||||
seq2  AATTGTCTCTTTACCA-----------------------AGAGCCTAATC  671

seq1  CCAACCCCAGGATGGTGAGTTACTTACTGTACTAATCCTGTCGACAGACC  749
      |||||||| |||||||||||||||||| ||||| ||||||||||||||||
seq2  CCAACCCCGGGATGGTGAGTTACTTACCGTACTCATCCTGTCGACAGACC  721

seq1  CTGACTGCAGAAAGTTCTGAACCTCTTCGGTGGGGGAGTCAGGTCCTGGG  799
       | ||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAACTACAGAAAGTTCTGAACCTCTTCGGTGGGGGAGTCAGGTCCCGGG  771

seq1  TTTCGGCACCATTTGTTGCGTCCAACTCGACCACCAAGGAAAACACAACC  849
      ||| ||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TTTTGGCACCATTTGTTGCGTCCAACTGGACCAGCAAGGAAAACACAACC  821

seq1  ACTGGTCATTCTTAAAGCAGTTTACTCAGGCAACTTCTCTCTTCAATTCC  899
      || ||    ||||||||||||||||||| ||| | |||||| |||| |||
seq2  ACCGGGTTCTCTTAAAGCAGTTTACTCA-GCAGC-TCTCTC-TCAA-TCC  867

seq1  CCAGAGCCCTGGGGTACAAGAGTTTTTATGCACTCAAGCCACAACCACGC  949
      ||| | ||  ||||||||  |  |||||| |||||||| |||||||||||
seq2  CCA-AACCTCGGGGTACAGCA--TTTTAT-CACTCAAG-CACAACCACGC  912

seq1  CTCAACCAATCACCACAGGTCACATCACCTCACCAGGCAGGCTTGCTCAG  999
       |||    |||| |||| |||| ||||||||| || |||| |||||||||
seq2  TTCA---CATCA-CACA-GTCATATCACCTCA-CAAGCAGCCTTGCTCAG  956

seq1  CCAATCAGGGATTAAGGGTGAGCCATCCACCAAATATGGGCTTGTTTA  1047
       |||||| |||| |   |||  ||||||||  || || || |||||||
seq2  -CAATCA-GGATCA---GTGGACCATCCAC--AAAATTGGATTGTTTA  997


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