BAC Information

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BAC

Clone NameB6Ng01-234G09
Chromosome3 (Build37)
Map Location 24,824,462 - 24,979,042
singlet/doubletdoublet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234G09.bB6Ng01-234G09.g
ACCGA046175GA046176
length1,0971,105
definitionB6Ng01-234G09.b B6Ng01-234G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,977,938 - 24,979,042)(24,824,462 - 24,825,573)
sequence
gaattctattcaagaggattaccagtttgtgcaaagaacccagtgtaaag
acctgctagctgaagaggtaaaacaaaaggtcctgacagacaagattttg
tcttaaattattttgctacctgtttgctttgttttgagaaatgttatttg
acctagcagagtgaagcttcattagtaagataacctaccatttactgaca
atttaccatgtccacagtgtttgcttttcctcaacaagtctgtagaggag
atattgaacttttattgataagaaaattgtaacccaggcattttgttata
tctttaagctctcaattatttaatttttctaagattgtgaatggtttccc
acaatgctatagtttgccttgccatatataatttgttgacgttaccagtt
caacaggtaacagttagttacctagtagatgatagctgccaggctgagtt
ttgggtaaggcattactttctatgtacactgaagtttagattgttttatg
aaatgagcctcaggatttgctttgcacttccaccaggtacttagcatgtg
atccaagaaaaggcagacggataagtaaagtcacatctttagattgcttt
aatttagtgctgatctaacgacaaagactaatgaaatagtaccataccaa
tatttttccccccataggaacataaaatgtcaaaattgtaattgcaaatc
ctgaagtttaaatcatttgcccgtctaccttcaaaaggatatttgtgtta
gtagagaatgtttctttgttgttcagactcacttctagctgtagaggggc
tttaaggagaagaggtgactggtctgtagagttgataatcactaggtgtt
catttagaatctttttcttctaattgagatgagaaaataactaggcagct
gctgctaattaccagacggattggtttttcatgcagtaacattttgttct
gaattattatattgaaaatgatgaccagctccttcttgggtgaaaggtgt
agcatagcccccatcagaactcgtaaagcagctgtcagcatctcttctat
tgtaccatcaccccatccttatggaggaaacactgtcctttgagtga
gaattctcataaaataagtacaagctactcatggttttcacaaagaatgc
atgtggacacatatgcacatacacacacacatacacacagacacatacac
acagacatatacacacagagagagcagtatagaaaaatcaactgaagcct
agattttttaaattctagtaaaaaaaaaatgagcatttgcattaaaaatt
ctatcttaagaacgtatttcatgaccaaaataatagagagtattcctacc
ccatccttttactaataagttcggagtaaatttaggaaaaatagtattaa
ataaaaagctcacaaacacccttcaaatccttgcatttcacacacaagct
actttcattaggatggcagtacataaaatagggaatgtgctgggtgtatt
tttcagcagattagctgtcctaattacattttgctaggctaatgttaaaa
ttagtttcaattccctaagtactcatcagttgatcacagagagagcaggc
ttgcaacttcctaggtactggaaagaaaccacctacaattaaagatgtag
ataatttaatctgtaataacagtgcatatagatagggtgaattaggtgct
catcaactcttaaactcccgtagattatctacagaaaaaaatcatataaa
atatctaagaaaaacatcagaactgatttaaaatcatatgtactgaaaga
gaatatatatactcagtagttggggatcaccttaatttagttttgaatga
gaaactattccttatagattttgtccatcattttatagaaaaacaagata
aaagtaatgttagtttgttgaaataatttaatgaaagcacatattaatac
ttataagtcattgttggtgcaagcaccttaacctttcttgtgatttcagt
tagtaaatatttgattcgattttctaaatgagttctttgagttgaaggtt
agatagactcaagacctattttcttaacaagagcaaggagattcactaat
ttttatgcatataaaaattatagtagtagtcaatggcctaggaaaatatg
gttcagtcatgtgagcaacatcaaaaatgatagctcgtctgctctgaatt
tagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24977938_24979042
seq2: B6Ng01-234G09.b_41_1137 (reverse)

seq1  TCACTCAAAAGGACAGTTGTTTCCTCCATAAAGGGATGGGGGTGATGGTA  50
      |||||| ||||||||| ||||||||||||||  |||| ||||||||||||
seq2  TCACTC-AAAGGACAG-TGTTTCCTCCATAA--GGAT-GGGGTGATGGTA  45

seq1  CAATAG-AGAGATGTTGACAGCTGCTTTAACGAGTTCTGAATTGGGGCTA  99
      |||||| ||||||| ||||||||||||| |||||||||| || |||||||
seq2  CAATAGAAGAGATGCTGACAGCTGCTTT-ACGAGTTCTG-ATGGGGGCTA  93

seq1  TTCTAAAACTTTCACCCAAGAAGGAGCTGGTCATTCATTTTCAATATAAT  149
      | ||| | ||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCTACACCTTTCACCCAAGAAGGAGCTGGTCA-TCATTTTCAATATAAT  142

seq1  AATTCAGAACAAAATGTTACCTGCATGAAAAACCAATCCGTCTGGTAATT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATTCAGAACAAAATGTTA-CTGCATGAAAAACCAATCCGTCTGGTAATT  191

seq1  AGCAGCAGCTGCCTAGTTATTTTCTCATCTCAATTAGAAGAAAAAGATTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCTGCCTAGTTATTTTCTCATCTCAATTAGAAGAAAAAGATTC  241

seq1  TAAATGAACACCTAGTGATTATCAACTCTACAGACCAGTCACCTCTTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAACACCTAGTGATTATCAACTCTACAGACCAGTCACCTCTTCTC  291

seq1  CTTAAAGCCCCTCTACAGCTAGAAGTGAGTCTGAACAACAAAGAAACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCCCCTCTACAGCTAGAAGTGAGTCTGAACAACAAAGAAACATT  341

seq1  CTCTACTAACACAAATATCCTTTTGAAGGTAGACGGGCAAATGATTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAACACAAATATCCTTTTGAAGGTAGACGGGCAAATGATTTAAA  391

seq1  CTTCAGGATTTGCAATTACAATTTTGACATTTTATGTTCCTATGGGGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGATTTGCAATTACAATTTTGACATTTTATGTTCCTATGGGGGGA  441

seq1  AAAATATTGGTATGGTACTATTTCATTAGTCTTTGTCGTTAGATCAGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGGTATGGTACTATTTCATTAGTCTTTGTCGTTAGATCAGCAC  491

seq1  TAAATTAAAGCAATCTAAAGATGTGACTTTACTTATCCGTCTGCCTTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAGCAATCTAAAGATGTGACTTTACTTATCCGTCTGCCTTTTC  541

seq1  TTGGATCACATGCTAAGTACCTGGTGGAAGTGCAAAGCAAATCCTGAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCACATGCTAAGTACCTGGTGGAAGTGCAAAGCAAATCCTGAGGC  591

seq1  TCATTTCATAAAACAATCTAAACTTCAGTGTACATAGAAAGTAATGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATAAAACAATCTAAACTTCAGTGTACATAGAAAGTAATGCCTT  641

seq1  ACCCAAAACTCAGCCTGGCAGCTATCATCTACTAGGTAACTAACTGTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAACTCAGCCTGGCAGCTATCATCTACTAGGTAACTAACTGTTAC  691

seq1  CTGTTGAACTGGTAACGTCAACAAATTATATATGGCAAGGCAAACTATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAACTGGTAACGTCAACAAATTATATATGGCAAGGCAAACTATAG  741

seq1  CATTGTGGGAAACCATTCACAATCTTAGAAAAATTAAATAATTGAGAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGGAAACCATTCACAATCTTAGAAAAATTAAATAATTGAGAGCT  791

seq1  TAAAGATATAACAAAATGCCTGGGTTACAATTTTCTTATCAATAAAAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATATAACAAAATGCCTGGGTTACAATTTTCTTATCAATAAAAGTT  841

seq1  CAATATCTCCTCTACAGACTTGTTGAGGAAAAGCAAACACTGTGGACATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTCCTCTACAGACTTGTTGAGGAAAAGCAAACACTGTGGACATG  891

seq1  GTAAATTGTCAGTAAATGGTAGGTTATCTTACTAATGAAGCTTCACTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGTCAGTAAATGGTAGGTTATCTTACTAATGAAGCTTCACTCTG  941

seq1  CTAGGTCAAATAACATTTCTCAAAACAAAGCAAACAGGTAGCAAAATAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCAAATAACATTTCTCAAAACAAAGCAAACAGGTAGCAAAATAAT  991

seq1  TTAAGACAAAATCTTGTCTGTCAGGACCTTTTGTTTTACCTCTTCAGCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAAAATCTTGTCTGTCAGGACCTTTTGTTTTACCTCTTCAGCTA  1041

seq1  GCAGGTCTTTACACTGGGTTCTTTGCACAAACTGGTAATCCTCTTGAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCTTTACACTGGGTTCTTTGCACAAACTGGTAATCCTCTTGAATA  1091

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1097

seq1: chr3_24824462_24825573
seq2: B6Ng01-234G09.g_61_1165

seq1  GAATTCTCATAAAATAAGTACAAGCTACTCATGGTTTTCACAAAGAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAAAATAAGTACAAGCTACTCATGGTTTTCACAAAGAATGC  50

seq1  ATGTGGACACATATGCACATACACACACACATACACACAGACACATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACACATATGCACATACACACACACATACACACAGACACATACAC  100

seq1  ACAGACATATACACACAGAGAGAGCAGTATAGAAAAATCAACTGAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATATACACACAGAGAGAGCAGTATAGAAAAATCAACTGAAGCCT  150

seq1  AGATTTTTTAAATTCTAGTAAAAAAAAAATGAGCATTTGCATTAAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTAAATTCTAGTAAAAAAAAAATGAGCATTTGCATTAAAAATT  200

seq1  CTATCTTAAGAACGTATTTCATGACCAAAATAATAGAGAGTATTCCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAAGAACGTATTTCATGACCAAAATAATAGAGAGTATTCCTACC  250

seq1  CCATCCTTTTACTAATAAGTTCGGAGTAAATTTAGGAAAAATAGTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTTACTAATAAGTTCGGAGTAAATTTAGGAAAAATAGTATTAA  300

seq1  ATAAAAAGCTCACAAACACCCTTCAAATCCTTGCATTTCACACACAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCTCACAAACACCCTTCAAATCCTTGCATTTCACACACAAGCT  350

seq1  ACTTTCATTAGGATGGCAGTACATAAAATAGGGAATGTGCTGGGTGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATTAGGATGGCAGTACATAAAATAGGGAATGTGCTGGGTGTATT  400

seq1  TTTCAGCAGATTAGCTGTCCTAATTACATTTTGCTAGGCTAATGTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGATTAGCTGTCCTAATTACATTTTGCTAGGCTAATGTTAAAA  450

seq1  TTAGTTTCAATTCCCTAAGTACTCATCAGTTGATCACAGAGAGAGCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCAATTCCCTAAGTACTCATCAGTTGATCACAGAGAGAGCAGGC  500

seq1  TTGCAACTTCCTAGGTACTGGAAAGAAACCACCTACAATTAAAGATGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTTCCTAGGTACTGGAAAGAAACCACCTACAATTAAAGATGTAG  550

seq1  ATAATTTAATCTGTAATAACAGTGCATATAGATAGGGTGAATTAGGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAATCTGTAATAACAGTGCATATAGATAGGGTGAATTAGGTGCT  600

seq1  CATCAACTCTTAAACTCCCGTAGATTATCTACAGAAAAAAATCATATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTCTTAAACTCCCGTAGATTATCTACAGAAAAAAATCATATAAA  650

seq1  ATATCTAAGAAAAACATCAGAACTGATTTAAAATCATATGTACTGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAGAAAAACATCAGAACTGATTTAAAATCATATGTACTGAAAGA  700

seq1  GAATATATATACTCAGTAGTTGGGGATCACCTTAATTTAGTTTTGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATATACTCAGTAGTTGGGGATCACCTTAATTTAGTTTTGAATGA  750

seq1  GAAACTATTCCTTATAGATTTTGTCCATCATTTTATAGAAAAACAAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATTCCTTATAGATTTTGTCCATCATTTTATAGAAAAACAAGATA  800

seq1  AAAGTAATGTTAGTTTGTTGAAATAATTTAATGAAAGCACATATTAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATGTTAGTTTGTTGAAATAATTTAATGAAAGCACATATTAATAC  850

seq1  TTATAAGTCATTGTTGGTGCAAGCACCTTAACCTTTCTTGTGATTTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTCATTGTTGGTGCAAGCACCTTAACCTTTCTTGTGATTTCAGT  900

seq1  TAGTAAATATTTTGATTCGATTTTCTAAATGAGTTCTTTGAGTTTGAAGG  950
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  TAGTAAATA-TTTGATTCGATTTTCTAAATGAGTTCTTTGAG-TTGAAGG  948

seq1  TTAGATAGACTCAAGACCTATTTTCTTAACAAGAGCAAGGAGATTCACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAGACTCAAGACCTATTTTCTTAACAAGAGCAAGGAGATTCACTA  998

seq1  ATTTTTTATGCATATAAAAATTATAGTAGTAGTCAATGGCCTAAG-AAAT  1049
      | ||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  A-TTTTTATGCATATAAAAATTATAGTAGTAGTCAATGGCCTAGGAAAAT  1047

seq1  ATTGGTCAGTCAATGTGAGCAACATCAAAAATGAATAGCTTCCTTCTTGC  1099
      || | |||||| ||||||||||||||||||||| ||||||  | || |||
seq2  ATGGTTCAGTC-ATGTGAGCAACATCAAAAATG-ATAGCT--CGTC-TGC  1092

seq1  TCTGATTTTAGAA  1112
      ||||| |||||||
seq2  TCTGAATTTAGAA  1105